Wall clock time and date at job start Mon Mar 30 2020 02:06:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38257 * 120.00012 * 2 1 4 4 C 1.38213 * 120.00184 * 180.02562 * 3 2 1 5 5 C 1.38258 * 119.99654 * 359.95486 * 4 3 2 6 6 C 1.50704 * 119.99826 * 180.02562 * 5 4 3 7 7 N 1.46899 * 109.47247 * 290.27739 * 6 5 4 8 8 C 1.47438 * 111.00297 * 76.37601 * 7 6 5 9 9 C 1.54313 * 107.23666 * 236.74355 * 8 7 6 10 10 C 1.55146 * 103.17411 * 337.62941 * 9 8 7 11 11 O 1.42898 * 110.98915 * 277.64589 * 10 9 8 12 12 C 1.50703 * 110.98765 * 153.83360 * 10 9 8 13 13 H 1.07994 * 120.00374 * 5.03764 * 12 10 9 14 14 C 1.37875 * 119.99599 * 185.04379 * 12 10 9 15 15 N 1.31519 * 120.00128 * 185.82380 * 14 12 10 16 16 Si 1.86807 * 120.00279 * 5.82947 * 14 12 10 17 17 H 1.48501 * 109.46830 * 83.05238 * 16 14 12 18 18 H 1.48496 * 109.47138 * 203.05523 * 16 14 12 19 19 H 1.48496 * 109.46817 * 323.05380 * 16 14 12 20 20 C 1.47842 * 110.99856 * 315.53207 * 7 6 5 21 21 C 1.38212 * 120.00087 * 0.27496 * 5 4 3 22 22 C 1.50697 * 119.99802 * 179.72465 * 21 5 4 23 23 C 1.38211 * 119.99898 * 179.97438 * 2 1 3 24 24 H 1.08998 * 109.47091 * 90.00015 * 1 2 3 25 25 H 1.09002 * 109.46511 * 210.00154 * 1 2 3 26 26 H 1.09003 * 109.46989 * 329.99876 * 1 2 3 27 27 H 1.08001 * 120.00004 * 359.97438 * 3 2 1 28 28 H 1.07998 * 120.00252 * 179.97438 * 4 3 2 29 29 H 1.09001 * 109.47379 * 170.27067 * 6 5 4 30 30 H 1.09008 * 109.46807 * 50.27638 * 6 5 4 31 31 H 1.08999 * 109.89030 * 117.33463 * 8 7 6 32 32 H 1.08998 * 109.89043 * 356.15234 * 8 7 6 33 33 H 1.08996 * 110.70873 * 96.09735 * 9 8 7 34 34 H 1.09004 * 110.70623 * 219.16008 * 9 8 7 35 35 H 0.96701 * 113.99988 * 298.54639 * 11 10 9 36 36 H 0.97000 * 119.99840 * 179.97438 * 15 14 12 37 37 H 1.08995 * 110.38044 * 265.19714 * 20 7 6 38 38 H 1.09003 * 110.37630 * 27.42753 * 20 7 6 39 39 H 1.08996 * 109.47607 * 81.41831 * 22 21 5 40 40 H 1.08999 * 109.47432 * 201.41908 * 22 21 5 41 41 H 1.09002 * 109.47329 * 321.41785 * 22 21 5 42 42 H 1.07998 * 120.00022 * 359.97438 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5805 1.1974 -0.0005 5 6 4.2717 0.0000 -0.0001 6 6 5.7788 0.0000 -0.0001 7 7 6.2685 0.4795 -1.2994 8 6 6.1389 1.9444 -1.4050 9 6 5.2854 2.2390 -2.6564 10 6 5.4553 0.9550 -3.5106 11 8 6.6709 0.9964 -4.2607 12 6 4.2700 0.7498 -4.4184 13 1 3.4921 1.4973 -4.4682 14 6 4.1787 -0.3923 -5.1852 15 7 3.2059 -0.5204 -6.0611 16 14 5.4365 -1.7582 -4.9803 17 1 5.0500 -2.6189 -3.8335 18 1 5.4854 -2.5760 -6.2188 19 1 6.7739 -1.1652 -4.7255 20 6 5.5164 -0.1409 -2.4108 21 6 3.5807 -1.1969 -0.0049 22 6 4.3342 -2.5020 -0.0108 23 6 2.1981 -1.1970 0.0005 24 1 -0.3633 0.0000 -1.0276 25 1 -0.3632 -0.8900 0.5139 26 1 -0.3633 0.8900 0.5139 27 1 1.6583 2.1327 -0.0004 28 1 4.1205 2.1327 -0.0010 29 1 6.1421 -1.0128 0.1739 30 1 6.1421 0.6571 0.7901 31 1 7.1246 2.3970 -1.5136 32 1 5.6437 2.3379 -0.5174 33 1 4.2401 2.3852 -2.3843 34 1 5.6691 3.1095 -3.1885 35 1 6.7194 1.7282 -4.8910 36 1 3.1419 -1.3238 -6.6008 37 1 6.0430 -1.0204 -2.7811 38 1 4.5116 -0.4102 -2.0854 39 1 4.6491 -2.7443 1.0042 40 1 3.6872 -3.2934 -0.3891 41 1 5.2113 -2.4123 -0.6516 42 1 1.6581 -2.1322 0.0014 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592154195.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:06:08 Heat of formation + Delta-G solvation = -12.235299 kcal Electronic energy + Delta-G solvation = -22809.168899 eV Core-core repulsion = 19754.164568 eV Total energy + Delta-G solvation = -3055.004331 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.10163 -38.06345 -35.21998 -33.36032 -32.30338 -31.72211 -30.25824 -28.37619 -27.37354 -26.78219 -24.81834 -23.50700 -21.72514 -20.65161 -19.67261 -19.49946 -17.19313 -16.01587 -15.70237 -15.30381 -14.93810 -14.64456 -14.43737 -14.06687 -13.54037 -13.42482 -13.03774 -12.94491 -12.79794 -12.63947 -12.36277 -12.23938 -11.83253 -11.82574 -11.43816 -11.33580 -11.21249 -11.08572 -10.75049 -10.67625 -10.40624 -10.23436 -10.10010 -9.89050 -8.92757 -8.61632 -8.43952 -8.31538 -8.09173 -7.67797 -6.13761 -4.23008 1.61629 1.70735 3.36825 3.46564 3.70002 3.98092 4.50439 4.68208 4.95875 5.04034 5.09926 5.18146 5.24175 5.30767 5.44333 5.50905 5.55290 5.58072 5.71952 5.76300 5.79506 5.83559 5.88952 5.95953 6.00799 6.06593 6.13276 6.30591 6.37858 6.42500 6.45239 6.60165 6.72081 6.78532 6.85315 6.88670 6.92100 7.22618 7.33146 7.45436 7.64730 7.72131 8.30173 8.83994 9.07151 9.52245 10.97087 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.015546 B = 0.008406 C = 0.007438 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1800.685178 B = 3330.070431 C = 3763.754718 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.085 4.085 3 C -0.122 4.122 4 C -0.104 4.104 5 C -0.114 4.114 6 C 0.081 3.919 7 N -0.519 5.519 8 C 0.042 3.958 9 C -0.155 4.155 10 C 0.219 3.781 11 O -0.568 6.568 12 C -0.545 4.545 13 H 0.074 0.926 14 C 0.089 3.911 15 N -0.891 5.891 16 Si 0.870 3.130 17 H -0.283 1.283 18 H -0.301 1.301 19 H -0.227 1.227 20 C 0.046 3.954 21 C -0.073 4.073 22 C -0.118 4.118 23 C -0.119 4.119 24 H 0.071 0.929 25 H 0.061 0.939 26 H 0.062 0.938 27 H 0.117 0.883 28 H 0.122 0.878 29 H 0.082 0.918 30 H 0.075 0.925 31 H 0.068 0.932 32 H 0.048 0.952 33 H 0.068 0.932 34 H 0.061 0.939 35 H 0.359 0.641 36 H 0.265 0.735 37 H 0.065 0.935 38 H 0.072 0.928 39 H 0.068 0.932 40 H 0.063 0.937 41 H 0.072 0.928 42 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.253 1.012 13.844 13.884 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.085 4.085 3 C -0.140 4.140 4 C -0.123 4.123 5 C -0.115 4.115 6 C -0.048 4.048 7 N -0.242 5.242 8 C -0.086 4.086 9 C -0.194 4.194 10 C 0.179 3.821 11 O -0.374 6.374 12 C -0.583 4.583 13 H 0.092 0.908 14 C -0.115 4.115 15 N -0.527 5.527 16 Si 0.698 3.302 17 H -0.210 1.210 18 H -0.228 1.228 19 H -0.150 1.150 20 C -0.080 4.080 21 C -0.073 4.073 22 C -0.175 4.175 23 C -0.137 4.137 24 H 0.090 0.910 25 H 0.080 0.920 26 H 0.081 0.919 27 H 0.135 0.865 28 H 0.140 0.860 29 H 0.100 0.900 30 H 0.093 0.907 31 H 0.086 0.914 32 H 0.066 0.934 33 H 0.087 0.913 34 H 0.080 0.920 35 H 0.205 0.795 36 H 0.074 0.926 37 H 0.083 0.917 38 H 0.090 0.910 39 H 0.086 0.914 40 H 0.082 0.918 41 H 0.090 0.910 42 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 0.363 0.237 14.051 14.058 hybrid contribution -0.672 -0.052 -0.369 0.768 sum -0.309 0.185 13.682 13.687 Atomic orbital electron populations 1.20767 0.91566 1.02072 1.02456 1.19816 0.95786 0.93226 0.99663 1.20910 0.94147 0.97264 1.01678 1.21102 0.94154 0.97483 0.99514 1.20387 0.97356 0.92874 1.00924 1.21509 0.88276 1.01947 0.93031 1.63939 1.53135 1.05546 1.01533 1.22891 0.99408 0.88726 0.97546 1.23322 0.99424 1.00017 0.96621 1.20130 0.83886 0.89607 0.88471 1.86520 1.41266 1.53424 1.56147 1.21238 1.06108 1.06718 1.24239 0.90776 1.24945 0.94831 0.98257 0.93497 1.69944 1.32264 1.28085 1.22440 0.87143 0.85440 0.81257 0.76381 1.21000 1.22840 1.14980 1.23611 0.96667 0.97934 0.89800 1.19724 0.93647 0.94819 0.99147 1.20859 1.00535 0.94173 1.01915 1.20834 0.93434 0.97382 1.02095 0.91004 0.91956 0.91899 0.86535 0.86036 0.90010 0.90659 0.91389 0.93404 0.91309 0.92049 0.79507 0.92573 0.91694 0.90958 0.91367 0.91756 0.90955 0.86514 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.37 10.01 36.01 0.36 -1.01 16 2 C -0.08 -1.30 5.88 -104.62 -0.62 -1.91 16 3 C -0.12 -1.90 9.70 -39.58 -0.38 -2.28 16 4 C -0.10 -1.68 8.16 -39.58 -0.32 -2.01 16 5 C -0.11 -1.89 3.43 -104.62 -0.36 -2.25 16 6 C 0.08 1.29 5.39 -4.97 -0.03 1.26 16 7 N -0.52 -9.95 5.41 -232.38 -1.26 -11.20 16 8 C 0.04 0.73 6.00 -2.84 -0.02 0.72 16 9 C -0.16 -3.10 5.95 -24.91 -0.15 -3.24 16 10 C 0.22 5.19 0.69 -89.38 -0.06 5.13 16 11 O -0.57 -13.38 10.65 -35.23 -0.38 -13.75 16 12 C -0.55 -15.24 8.88 -34.44 -0.31 -15.54 16 13 H 0.07 2.25 8.03 -52.49 -0.42 1.82 16 14 C 0.09 2.59 5.47 -17.82 -0.10 2.50 16 15 N -0.89 -27.25 13.96 55.43 0.77 -26.48 16 16 Si 0.87 22.52 23.91 -169.99 -4.06 18.46 16 17 H -0.28 -7.16 7.08 56.52 0.40 -6.76 16 18 H -0.30 -7.83 7.11 56.52 0.40 -7.43 16 19 H -0.23 -5.86 5.58 56.52 0.32 -5.55 16 20 C 0.05 1.05 4.32 -2.05 -0.01 1.04 16 21 C -0.07 -1.19 4.99 -104.63 -0.52 -1.71 16 22 C -0.12 -1.70 9.00 36.00 0.32 -1.38 16 23 C -0.12 -1.89 9.33 -39.58 -0.37 -2.26 16 24 H 0.07 0.92 8.14 -51.93 -0.42 0.49 16 25 H 0.06 0.66 8.09 -51.93 -0.42 0.24 16 26 H 0.06 0.66 8.09 -51.93 -0.42 0.24 16 27 H 0.12 1.57 8.06 -52.49 -0.42 1.14 16 28 H 0.12 1.82 5.52 -52.49 -0.29 1.53 16 29 H 0.08 1.24 5.92 -51.93 -0.31 0.93 16 30 H 0.08 1.05 7.84 -51.92 -0.41 0.65 16 31 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 32 H 0.05 0.73 4.88 -51.93 -0.25 0.48 16 33 H 0.07 1.41 7.38 -51.93 -0.38 1.03 16 34 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 35 H 0.36 7.33 9.11 45.56 0.41 7.74 16 36 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 37 H 0.06 1.58 4.86 -51.93 -0.25 1.33 16 38 H 0.07 1.71 5.06 -51.93 -0.26 1.45 16 39 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 40 H 0.06 0.87 8.02 -51.93 -0.42 0.45 16 41 H 0.07 1.14 6.76 -51.93 -0.35 0.79 16 42 H 0.12 1.61 8.05 -52.49 -0.42 1.19 16 LS Contribution 317.45 15.07 4.78 4.78 Total: -1.00 -31.99 317.45 -8.22 -40.21 By element: Atomic # 1 Polarization: 16.46 SS G_CDS: -5.53 Total: 10.93 kcal Atomic # 6 Polarization: -20.39 SS G_CDS: -2.55 Total: -22.95 kcal Atomic # 7 Polarization: -37.20 SS G_CDS: -0.48 Total: -37.68 kcal Atomic # 8 Polarization: -13.38 SS G_CDS: -0.38 Total: -13.75 kcal Atomic # 14 Polarization: 22.52 SS G_CDS: -4.06 Total: 18.46 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -31.99 -8.22 -40.21 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592154195.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.974 kcal (2) G-P(sol) polarization free energy of solvation -31.986 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.012 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.223 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.209 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.235 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds