Wall clock time and date at job start Mon Mar 30 2020 02:06:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38257 * 120.00012 * 2 1 4 4 C 1.38213 * 120.00184 * 180.02562 * 3 2 1 5 5 C 1.38258 * 119.99654 * 359.95486 * 4 3 2 6 6 C 1.50704 * 119.99826 * 180.02562 * 5 4 3 7 7 N 1.46899 * 109.47247 * 290.27739 * 6 5 4 8 8 C 1.47438 * 111.00297 * 76.37601 * 7 6 5 9 9 C 1.54313 * 107.23666 * 236.74355 * 8 7 6 10 10 C 1.55146 * 103.17411 * 337.62941 * 9 8 7 11 11 O 1.42898 * 110.98915 * 277.64589 * 10 9 8 12 12 C 1.50703 * 110.98765 * 153.83360 * 10 9 8 13 13 H 1.07994 * 120.00374 * 5.03764 * 12 10 9 14 14 C 1.37875 * 119.99599 * 185.04379 * 12 10 9 15 15 N 1.31519 * 120.00128 * 185.82380 * 14 12 10 16 16 Si 1.86807 * 120.00279 * 5.82947 * 14 12 10 17 17 H 1.48501 * 109.46830 * 83.05238 * 16 14 12 18 18 H 1.48496 * 109.47138 * 203.05523 * 16 14 12 19 19 H 1.48496 * 109.46817 * 323.05380 * 16 14 12 20 20 C 1.47842 * 110.99856 * 315.53207 * 7 6 5 21 21 C 1.38212 * 120.00087 * 0.27496 * 5 4 3 22 22 C 1.50697 * 119.99802 * 179.72465 * 21 5 4 23 23 C 1.38211 * 119.99898 * 179.97438 * 2 1 3 24 24 H 1.08998 * 109.47091 * 90.00015 * 1 2 3 25 25 H 1.09002 * 109.46511 * 210.00154 * 1 2 3 26 26 H 1.09003 * 109.46989 * 329.99876 * 1 2 3 27 27 H 1.08001 * 120.00004 * 359.97438 * 3 2 1 28 28 H 1.07998 * 120.00252 * 179.97438 * 4 3 2 29 29 H 1.09001 * 109.47379 * 170.27067 * 6 5 4 30 30 H 1.09008 * 109.46807 * 50.27638 * 6 5 4 31 31 H 1.08999 * 109.89030 * 117.33463 * 8 7 6 32 32 H 1.08998 * 109.89043 * 356.15234 * 8 7 6 33 33 H 1.08996 * 110.70873 * 96.09735 * 9 8 7 34 34 H 1.09004 * 110.70623 * 219.16008 * 9 8 7 35 35 H 0.96701 * 113.99988 * 298.54639 * 11 10 9 36 36 H 0.97000 * 119.99840 * 179.97438 * 15 14 12 37 37 H 1.08995 * 110.38044 * 265.19714 * 20 7 6 38 38 H 1.09003 * 110.37630 * 27.42753 * 20 7 6 39 39 H 1.08996 * 109.47607 * 81.41831 * 22 21 5 40 40 H 1.08999 * 109.47432 * 201.41908 * 22 21 5 41 41 H 1.09002 * 109.47329 * 321.41785 * 22 21 5 42 42 H 1.07998 * 120.00022 * 359.97438 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5805 1.1974 -0.0005 5 6 4.2717 0.0000 -0.0001 6 6 5.7788 0.0000 -0.0001 7 7 6.2685 0.4795 -1.2994 8 6 6.1389 1.9444 -1.4050 9 6 5.2854 2.2390 -2.6564 10 6 5.4553 0.9550 -3.5106 11 8 6.6709 0.9964 -4.2607 12 6 4.2700 0.7498 -4.4184 13 1 3.4921 1.4973 -4.4682 14 6 4.1787 -0.3923 -5.1852 15 7 3.2059 -0.5204 -6.0611 16 14 5.4365 -1.7582 -4.9803 17 1 5.0500 -2.6189 -3.8335 18 1 5.4854 -2.5760 -6.2188 19 1 6.7739 -1.1652 -4.7255 20 6 5.5164 -0.1409 -2.4108 21 6 3.5807 -1.1969 -0.0049 22 6 4.3342 -2.5020 -0.0108 23 6 2.1981 -1.1970 0.0005 24 1 -0.3633 0.0000 -1.0276 25 1 -0.3632 -0.8900 0.5139 26 1 -0.3633 0.8900 0.5139 27 1 1.6583 2.1327 -0.0004 28 1 4.1205 2.1327 -0.0010 29 1 6.1421 -1.0128 0.1739 30 1 6.1421 0.6571 0.7901 31 1 7.1246 2.3970 -1.5136 32 1 5.6437 2.3379 -0.5174 33 1 4.2401 2.3852 -2.3843 34 1 5.6691 3.1095 -3.1885 35 1 6.7194 1.7282 -4.8910 36 1 3.1419 -1.3238 -6.6008 37 1 6.0430 -1.0204 -2.7811 38 1 4.5116 -0.4102 -2.0854 39 1 4.6491 -2.7443 1.0042 40 1 3.6872 -3.2934 -0.3891 41 1 5.2113 -2.4123 -0.6516 42 1 1.6581 -2.1322 0.0014 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592154195.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:06:07 Heat of formation + Delta-G solvation = -35.362512 kcal Electronic energy + Delta-G solvation = -22810.171770 eV Core-core repulsion = 19754.164568 eV Total energy + Delta-G solvation = -3056.007202 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.42926 -39.54785 -36.84158 -34.62727 -34.49406 -32.96488 -31.72599 -30.13084 -28.64288 -27.99888 -26.55633 -24.96861 -22.95155 -22.09989 -21.47619 -20.77877 -19.23702 -17.40935 -17.18269 -16.83077 -16.59496 -16.15022 -15.84002 -15.69356 -14.99972 -14.88215 -14.65144 -14.23299 -14.10124 -13.97103 -13.83373 -13.47583 -13.42980 -13.15212 -13.11829 -12.87270 -12.69941 -12.42681 -12.25875 -12.19658 -11.98710 -11.86620 -11.74000 -11.48969 -10.97480 -10.75278 -10.22399 -9.64285 -9.34773 -9.12561 -8.39446 -6.50208 0.41923 0.50591 1.29810 1.35863 1.61150 2.35103 2.77380 2.97734 3.21867 3.63149 3.82046 3.86078 3.93728 4.03619 4.07773 4.12131 4.32532 4.38000 4.42010 4.59275 4.62884 4.65457 4.71967 4.74018 4.79424 4.80376 4.85939 4.91925 4.97554 5.05934 5.16426 5.22937 5.26941 5.33939 5.46229 5.50295 5.56076 5.68356 5.71805 6.00209 6.11495 6.16838 6.22696 6.59937 7.18923 7.35654 8.75159 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.015546 B = 0.008406 C = 0.007438 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1800.685178 B = 3330.070431 C = 3763.754718 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.096 4.096 3 C -0.138 4.138 4 C -0.114 4.114 5 C -0.129 4.129 6 C 0.081 3.919 7 N -0.524 5.524 8 C 0.047 3.953 9 C -0.149 4.149 10 C 0.211 3.789 11 O -0.574 6.574 12 C -0.542 4.542 13 H 0.037 0.963 14 C 0.042 3.958 15 N -0.934 5.934 16 Si 0.927 3.073 17 H -0.277 1.277 18 H -0.304 1.304 19 H -0.224 1.224 20 C 0.058 3.942 21 C -0.089 4.089 22 C -0.116 4.116 23 C -0.138 4.138 24 H 0.063 0.937 25 H 0.078 0.922 26 H 0.080 0.920 27 H 0.133 0.867 28 H 0.132 0.868 29 H 0.089 0.911 30 H 0.101 0.899 31 H 0.082 0.918 32 H 0.074 0.926 33 H 0.058 0.942 34 H 0.075 0.925 35 H 0.371 0.629 36 H 0.266 0.734 37 H 0.047 0.953 38 H 0.058 0.942 39 H 0.094 0.906 40 H 0.067 0.933 41 H 0.056 0.944 42 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.762 1.186 15.782 15.845 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.096 4.096 3 C -0.156 4.156 4 C -0.132 4.132 5 C -0.130 4.130 6 C -0.047 4.047 7 N -0.246 5.246 8 C -0.080 4.080 9 C -0.188 4.188 10 C 0.171 3.829 11 O -0.381 6.381 12 C -0.580 4.580 13 H 0.056 0.944 14 C -0.159 4.159 15 N -0.574 5.574 16 Si 0.754 3.246 17 H -0.203 1.203 18 H -0.231 1.231 19 H -0.146 1.146 20 C -0.070 4.070 21 C -0.089 4.089 22 C -0.173 4.173 23 C -0.155 4.155 24 H 0.082 0.918 25 H 0.097 0.903 26 H 0.099 0.901 27 H 0.151 0.849 28 H 0.150 0.850 29 H 0.107 0.893 30 H 0.119 0.881 31 H 0.100 0.900 32 H 0.092 0.908 33 H 0.076 0.924 34 H 0.094 0.906 35 H 0.219 0.781 36 H 0.075 0.925 37 H 0.065 0.935 38 H 0.076 0.924 39 H 0.112 0.888 40 H 0.086 0.914 41 H 0.075 0.925 42 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 1.386 0.428 16.005 16.071 hybrid contribution -1.054 -0.022 -0.966 1.430 sum 0.332 0.406 15.039 15.048 Atomic orbital electron populations 1.20803 0.89637 1.03836 1.02364 1.20233 0.97454 0.93113 0.98828 1.21234 0.94399 0.98213 1.01719 1.21312 0.94617 0.97835 0.99475 1.20495 0.97664 0.93167 1.01707 1.21613 0.88073 1.03015 0.91956 1.63880 1.52645 1.06234 1.01822 1.22931 0.99857 0.87951 0.97237 1.23217 0.99569 0.98680 0.97298 1.20092 0.82201 0.92349 0.88308 1.86470 1.40531 1.54438 1.56683 1.21506 1.06637 1.05318 1.24509 0.94433 1.25640 0.96392 1.00412 0.93416 1.70058 1.34356 1.28955 1.23993 0.86251 0.83387 0.78843 0.76156 1.20277 1.23146 1.14644 1.23270 0.96062 0.96931 0.90702 1.20056 0.94210 0.95649 0.99028 1.20875 0.99721 0.93482 1.03197 1.21148 0.93687 0.98328 1.02386 0.91845 0.90321 0.90141 0.84903 0.85037 0.89271 0.88077 0.90004 0.90779 0.92373 0.90639 0.78121 0.92511 0.93516 0.92423 0.88759 0.91422 0.92481 0.85161 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.54 10.01 71.24 0.71 -1.82 16 2 C -0.10 -2.85 5.88 -19.87 -0.12 -2.97 16 3 C -0.14 -4.12 9.70 22.27 0.22 -3.91 16 4 C -0.11 -3.50 8.16 22.27 0.18 -3.32 16 5 C -0.13 -4.06 3.43 -19.86 -0.07 -4.13 16 6 C 0.08 2.38 5.39 85.56 0.46 2.84 16 7 N -0.52 -18.74 5.41 -889.13 -4.81 -23.55 16 8 C 0.05 1.52 6.00 86.65 0.52 2.03 16 9 C -0.15 -5.70 5.95 31.78 0.19 -5.51 16 10 C 0.21 9.81 0.69 -9.99 -0.01 9.80 16 11 O -0.57 -26.16 10.65 -148.98 -1.59 -27.75 16 12 C -0.54 -30.71 8.88 25.60 0.23 -30.48 16 13 H 0.04 2.35 8.03 -2.91 -0.02 2.33 16 14 C 0.04 2.45 5.47 84.65 0.46 2.91 16 15 N -0.93 -58.53 13.96 21.45 0.30 -58.23 16 16 Si 0.93 47.07 23.91 68.60 1.64 48.71 16 17 H -0.28 -13.58 7.08 99.48 0.70 -12.88 16 18 H -0.30 -15.38 7.11 99.48 0.71 -14.68 16 19 H -0.22 -11.15 5.58 99.48 0.56 -10.60 16 20 C 0.06 2.54 4.32 86.94 0.38 2.92 16 21 C -0.09 -2.80 4.99 -19.87 -0.10 -2.90 16 22 C -0.12 -3.17 9.00 71.24 0.64 -2.53 16 23 C -0.14 -4.22 9.33 22.27 0.21 -4.01 16 24 H 0.06 1.58 8.14 -2.39 -0.02 1.56 16 25 H 0.08 1.53 8.09 -2.39 -0.02 1.51 16 26 H 0.08 1.54 8.09 -2.39 -0.02 1.53 16 27 H 0.13 3.38 8.06 -2.91 -0.02 3.36 16 28 H 0.13 3.62 5.52 -2.91 -0.02 3.60 16 29 H 0.09 2.48 5.92 -2.39 -0.01 2.47 16 30 H 0.10 2.45 7.84 -2.38 -0.02 2.43 16 31 H 0.08 2.44 8.14 -2.39 -0.02 2.42 16 32 H 0.07 2.00 4.88 -2.39 -0.01 1.99 16 33 H 0.06 2.33 7.38 -2.39 -0.02 2.31 16 34 H 0.07 2.63 8.14 -2.39 -0.02 2.61 16 35 H 0.37 14.63 9.11 -74.06 -0.67 13.96 16 36 H 0.27 15.75 8.31 -92.71 -0.77 14.98 16 37 H 0.05 2.22 4.86 -2.39 -0.01 2.21 16 38 H 0.06 2.71 5.06 -2.39 -0.01 2.70 16 39 H 0.09 2.01 8.14 -2.39 -0.02 1.99 16 40 H 0.07 1.75 8.02 -2.39 -0.02 1.73 16 41 H 0.06 1.72 6.76 -2.39 -0.02 1.71 16 42 H 0.13 3.47 8.05 -2.91 -0.02 3.45 16 Total: -1.00 -68.85 317.45 -0.36 -69.21 By element: Atomic # 1 Polarization: 32.49 SS G_CDS: 0.20 Total: 32.69 kcal Atomic # 6 Polarization: -44.98 SS G_CDS: 3.90 Total: -41.07 kcal Atomic # 7 Polarization: -77.27 SS G_CDS: -4.51 Total: -81.78 kcal Atomic # 8 Polarization: -26.16 SS G_CDS: -1.59 Total: -27.75 kcal Atomic # 14 Polarization: 47.07 SS G_CDS: 1.64 Total: 48.71 kcal Total: -68.85 -0.36 -69.21 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592154195.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.846 kcal (2) G-P(sol) polarization free energy of solvation -68.852 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.006 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.357 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.209 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.363 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds