Wall clock time and date at job start Mon Mar 30 2020 02:06:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38255 * 119.99720 * 2 1 4 4 C 1.38215 * 119.99924 * 180.02562 * 3 2 1 5 5 C 1.38258 * 120.00064 * 0.02562 * 4 3 2 6 6 C 1.38207 * 119.99850 * 359.95299 * 5 4 3 7 7 C 1.50700 * 120.00109 * 180.02562 * 6 5 4 8 8 N 1.46897 * 109.47366 * 260.00515 * 7 6 5 9 9 C 1.47899 * 111.00068 * 69.87158 * 8 7 6 10 10 C 1.53997 * 107.05889 * 145.84368 * 9 8 7 11 11 C 1.54593 * 105.13807 * 358.77516 * 10 9 8 12 12 O 1.42904 * 110.72258 * 96.40366 * 11 10 9 13 13 C 1.50705 * 110.72583 * 219.68092 * 11 10 9 14 14 H 1.07993 * 119.99953 * 118.54560 * 13 11 10 15 15 C 1.37878 * 119.99835 * 298.55374 * 13 11 10 16 16 N 1.31514 * 120.00255 * 359.97438 * 15 13 11 17 17 Si 1.86799 * 119.99873 * 179.97438 * 15 13 11 18 18 H 1.48497 * 109.47393 * 89.99416 * 17 15 13 19 19 H 1.48494 * 109.47178 * 209.99665 * 17 15 13 20 20 H 1.48501 * 109.47020 * 329.99469 * 17 15 13 21 21 C 1.48538 * 111.00123 * 187.27000 * 8 7 6 22 22 C 1.38219 * 120.00212 * 180.20759 * 2 1 3 23 23 C 1.50694 * 119.99922 * 0.02679 * 22 2 1 24 24 H 1.09006 * 109.46908 * 90.00297 * 1 2 3 25 25 H 1.09002 * 109.47301 * 209.99305 * 1 2 3 26 26 H 1.08994 * 109.47788 * 329.99827 * 1 2 3 27 27 H 1.08000 * 120.00276 * 0.02562 * 3 2 1 28 28 H 1.08002 * 120.00135 * 179.97438 * 4 3 2 29 29 H 1.08002 * 119.99905 * 179.97438 * 5 4 3 30 30 H 1.09001 * 109.47393 * 140.00421 * 7 6 5 31 31 H 1.09004 * 109.46904 * 20.00161 * 7 6 5 32 32 H 1.09004 * 109.91646 * 26.49394 * 9 8 7 33 33 H 1.09001 * 110.08341 * 265.29071 * 9 8 7 34 34 H 1.09004 * 110.30998 * 117.69119 * 10 9 8 35 35 H 1.08998 * 110.30811 * 239.85930 * 10 9 8 36 36 H 0.96700 * 114.00523 * 61.45046 * 12 11 10 37 37 H 0.96994 * 120.00103 * 180.02562 * 16 15 13 38 38 H 1.09007 * 110.66246 * 318.71191 * 21 8 7 39 39 H 1.08993 * 110.66671 * 81.67342 * 21 8 7 40 40 H 1.09004 * 109.47233 * 270.18263 * 23 22 2 41 41 H 1.08997 * 109.47416 * 30.18403 * 23 22 2 42 42 H 1.09000 * 109.47294 * 150.18839 * 23 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1982 1.1974 0.0000 4 6 3.5803 1.1974 -0.0005 5 6 4.2717 0.0001 -0.0016 6 6 3.5806 -1.1968 -0.0012 7 6 4.3341 -2.5019 -0.0017 8 7 4.3699 -3.0462 -1.3657 9 6 5.2404 -2.2300 -2.2394 10 6 5.9102 -3.1934 -3.2367 11 6 5.3907 -4.5977 -2.8524 12 8 4.2780 -4.9664 -3.6698 13 6 6.4924 -5.6208 -2.9562 14 1 6.8061 -6.1673 -2.0791 15 6 7.1000 -5.8589 -4.1707 16 7 6.7178 -5.1936 -5.2389 17 14 8.4661 -7.1264 -4.2992 18 1 7.8809 -8.4549 -4.6123 19 1 9.4066 -6.7329 -5.3788 20 1 9.1967 -7.1992 -3.0084 21 6 4.9509 -4.4132 -1.3784 22 6 2.1981 -1.1970 -0.0043 23 6 1.4446 -2.5020 -0.0097 24 1 -0.3633 -0.0001 -1.0277 25 1 -0.3634 -0.8901 0.5137 26 1 -0.3634 0.8899 0.5138 27 1 1.6582 2.1327 0.0004 28 1 4.1203 2.1327 -0.0010 29 1 5.3517 0.0002 -0.0024 30 1 3.8345 -3.2103 0.6591 31 1 5.3524 -2.3337 0.3491 32 1 6.0004 -1.7273 -1.6412 33 1 4.6447 -1.4930 -2.7781 34 1 5.6155 -2.9470 -4.2569 35 1 6.9945 -3.1500 -3.1344 36 1 4.4832 -5.0191 -4.6133 37 1 7.1449 -5.3613 -6.0934 38 1 5.8102 -4.4721 -0.7102 39 1 4.1995 -5.1530 -1.1028 40 1 1.2597 -2.8190 1.0167 41 1 0.4939 -2.3706 -0.5262 42 1 2.0354 -3.2606 -0.5233 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592524737.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:06:11 Heat of formation + Delta-G solvation = -31.126253 kcal Electronic energy + Delta-G solvation = -21726.381097 eV Core-core repulsion = 18670.557593 eV Total energy + Delta-G solvation = -3055.823504 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -39.74933 -38.06708 -34.93941 -33.21223 -32.50231 -32.09324 -29.48052 -28.10985 -27.46990 -26.21431 -25.31345 -23.83560 -20.94555 -20.56584 -19.79283 -19.39657 -16.96781 -15.92302 -15.92026 -15.10992 -14.91218 -14.65242 -14.45326 -13.87943 -13.78172 -13.19107 -12.91263 -12.81366 -12.65478 -12.47633 -12.23049 -12.19578 -11.77316 -11.60068 -11.46449 -11.25123 -11.12802 -11.02834 -10.69468 -10.67402 -10.43557 -10.40574 -10.28595 -9.73217 -9.13743 -8.58443 -8.46568 -8.33266 -8.04466 -7.67581 -6.18793 -4.27206 1.52044 1.55814 3.23147 3.30307 3.33006 3.84971 4.31117 4.77547 4.89515 4.94341 5.07415 5.12883 5.20257 5.36677 5.49440 5.49897 5.61026 5.73809 5.78932 5.83479 5.86262 5.90218 5.92171 6.01875 6.08456 6.16135 6.22924 6.31810 6.50043 6.52531 6.62375 6.65702 6.71504 6.91530 6.94297 7.08908 7.21111 7.42903 7.54305 7.59587 7.74249 7.84561 8.21340 8.75391 9.41773 9.58280 10.88151 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.034597 B = 0.004200 C = 0.004062 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 809.132619 B = 6665.385050 C = 6891.848859 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.095 4.095 3 C -0.124 4.124 4 C -0.127 4.127 5 C -0.116 4.116 6 C -0.064 4.064 7 C 0.081 3.919 8 N -0.504 5.504 9 C 0.041 3.959 10 C -0.129 4.129 11 C 0.258 3.742 12 O -0.580 6.580 13 C -0.538 4.538 14 H 0.060 0.940 15 C 0.072 3.928 16 N -0.894 5.894 17 Si 0.898 3.102 18 H -0.279 1.279 19 H -0.286 1.286 20 H -0.274 1.274 21 C 0.052 3.948 22 C -0.060 4.060 23 C -0.122 4.122 24 H 0.068 0.932 25 H 0.067 0.933 26 H 0.061 0.939 27 H 0.115 0.885 28 H 0.116 0.884 29 H 0.116 0.884 30 H 0.078 0.922 31 H 0.037 0.963 32 H 0.027 0.973 33 H 0.061 0.939 34 H 0.065 0.935 35 H 0.059 0.941 36 H 0.376 0.624 37 H 0.266 0.734 38 H 0.044 0.956 39 H 0.072 0.928 40 H 0.061 0.939 41 H 0.063 0.937 42 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.469 10.113 9.630 15.836 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.095 4.095 3 C -0.143 4.143 4 C -0.145 4.145 5 C -0.135 4.135 6 C -0.065 4.065 7 C -0.047 4.047 8 N -0.228 5.228 9 C -0.087 4.087 10 C -0.168 4.168 11 C 0.218 3.782 12 O -0.387 6.387 13 C -0.577 4.577 14 H 0.078 0.922 15 C -0.131 4.131 16 N -0.533 5.533 17 Si 0.726 3.274 18 H -0.204 1.204 19 H -0.211 1.211 20 H -0.199 1.199 21 C -0.075 4.075 22 C -0.060 4.060 23 C -0.179 4.179 24 H 0.087 0.913 25 H 0.086 0.914 26 H 0.079 0.921 27 H 0.133 0.867 28 H 0.134 0.866 29 H 0.134 0.866 30 H 0.096 0.904 31 H 0.055 0.945 32 H 0.045 0.955 33 H 0.079 0.921 34 H 0.084 0.916 35 H 0.078 0.922 36 H 0.226 0.774 37 H 0.076 0.924 38 H 0.063 0.937 39 H 0.091 0.909 40 H 0.080 0.920 41 H 0.081 0.919 42 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -8.271 10.113 9.840 16.356 hybrid contribution 2.101 -0.394 -0.427 2.180 sum -6.169 9.719 9.413 14.870 Atomic orbital electron populations 1.20780 0.91599 1.02338 1.02176 1.19749 0.95776 0.92743 1.01195 1.20905 0.94211 0.97118 1.02038 1.20989 0.94253 0.97644 1.01605 1.21021 0.99542 0.92117 1.00818 1.19695 0.93218 0.94608 0.98958 1.21208 0.97587 0.93266 0.92634 1.64780 1.48757 1.02855 1.06427 1.22881 0.93824 0.96530 0.95464 1.22931 0.99250 0.96668 0.97912 1.19303 0.83736 0.89994 0.85202 1.86139 1.37985 1.92228 1.22395 1.21613 1.18378 1.22476 0.95207 0.92174 1.24993 0.96761 0.95687 0.95645 1.69740 1.42716 1.40980 0.99865 0.86503 0.81529 0.81612 0.77801 1.20445 1.21136 1.19872 1.23204 0.96917 0.88858 0.98554 1.19603 0.93003 0.94850 0.98573 1.20911 1.00172 0.95238 1.01535 0.91335 0.91407 0.92050 0.86672 0.86570 0.86602 0.90358 0.94485 0.95490 0.92098 0.91599 0.92200 0.77443 0.92399 0.93746 0.90928 0.92018 0.91855 0.89140 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.14 9.19 36.00 0.33 -0.81 16 2 C -0.09 -1.24 5.88 -104.63 -0.62 -1.85 16 3 C -0.12 -1.54 9.70 -39.58 -0.38 -1.93 16 4 C -0.13 -1.61 10.05 -39.58 -0.40 -2.01 16 5 C -0.12 -1.65 9.46 -39.59 -0.37 -2.03 16 6 C -0.06 -0.99 4.95 -104.63 -0.52 -1.51 16 7 C 0.08 1.32 4.02 -4.98 -0.02 1.30 16 8 N -0.50 -9.84 4.58 -231.89 -1.06 -10.90 16 9 C 0.04 0.82 5.99 -2.75 -0.02 0.81 16 10 C -0.13 -3.02 5.26 -25.37 -0.13 -3.16 16 11 C 0.26 6.44 0.95 -89.91 -0.09 6.35 16 12 O -0.58 -15.36 13.09 -35.23 -0.46 -15.82 16 13 C -0.54 -14.44 8.14 -34.44 -0.28 -14.72 16 14 H 0.06 1.60 7.78 -52.49 -0.41 1.19 16 15 C 0.07 1.90 5.28 -17.82 -0.09 1.80 16 16 N -0.89 -24.01 11.02 55.43 0.61 -23.40 16 17 Si 0.90 20.65 29.54 -169.99 -5.02 15.63 16 18 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 19 H -0.29 -6.52 7.11 56.52 0.40 -6.12 16 20 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 21 C 0.05 1.12 5.67 -1.90 -0.01 1.11 16 22 C -0.06 -0.87 5.88 -104.62 -0.62 -1.49 16 23 C -0.12 -1.65 8.44 36.00 0.30 -1.34 16 24 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 25 H 0.07 0.64 6.72 -51.93 -0.35 0.29 16 26 H 0.06 0.52 8.09 -51.93 -0.42 0.10 16 27 H 0.12 1.15 8.06 -52.49 -0.42 0.73 16 28 H 0.12 1.21 8.06 -52.49 -0.42 0.78 16 29 H 0.12 1.54 8.04 -52.49 -0.42 1.12 16 30 H 0.08 1.19 7.27 -51.93 -0.38 0.81 16 31 H 0.04 0.59 7.68 -51.93 -0.40 0.19 16 32 H 0.03 0.50 7.57 -51.93 -0.39 0.11 16 33 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 34 H 0.07 1.64 7.99 -51.93 -0.41 1.22 16 35 H 0.06 1.46 7.84 -51.93 -0.41 1.06 16 36 H 0.38 10.08 7.48 45.56 0.34 10.42 16 37 H 0.27 6.85 8.31 -40.82 -0.34 6.51 16 38 H 0.04 0.93 7.92 -51.93 -0.41 0.52 16 39 H 0.07 1.56 8.14 -51.93 -0.42 1.14 16 40 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 41 H 0.06 0.78 6.72 -51.93 -0.35 0.43 16 42 H 0.09 1.43 6.34 -51.93 -0.33 1.10 16 LS Contribution 332.81 15.07 5.02 5.02 Total: -1.00 -27.99 332.81 -9.84 -37.83 By element: Atomic # 1 Polarization: 17.14 SS G_CDS: -6.01 Total: 11.13 kcal Atomic # 6 Polarization: -16.56 SS G_CDS: -2.91 Total: -19.47 kcal Atomic # 7 Polarization: -33.85 SS G_CDS: -0.45 Total: -34.30 kcal Atomic # 8 Polarization: -15.36 SS G_CDS: -0.46 Total: -15.82 kcal Atomic # 14 Polarization: 20.65 SS G_CDS: -5.02 Total: 15.63 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -27.99 -9.84 -37.83 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592524737.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.700 kcal (2) G-P(sol) polarization free energy of solvation -27.989 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.289 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.838 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.827 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.126 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds