Wall clock time and date at job start Mon Mar 30 2020 02:06:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38255 * 119.99720 * 2 1 4 4 C 1.38215 * 119.99924 * 180.02562 * 3 2 1 5 5 C 1.38258 * 120.00064 * 0.02562 * 4 3 2 6 6 C 1.38207 * 119.99850 * 359.95299 * 5 4 3 7 7 C 1.50700 * 120.00109 * 180.02562 * 6 5 4 8 8 N 1.46897 * 109.47366 * 260.00515 * 7 6 5 9 9 C 1.47899 * 111.00068 * 69.87158 * 8 7 6 10 10 C 1.53997 * 107.05889 * 145.84368 * 9 8 7 11 11 C 1.54593 * 105.13807 * 358.77516 * 10 9 8 12 12 O 1.42904 * 110.72258 * 96.40366 * 11 10 9 13 13 C 1.50705 * 110.72583 * 219.68092 * 11 10 9 14 14 H 1.07993 * 119.99953 * 118.54560 * 13 11 10 15 15 C 1.37878 * 119.99835 * 298.55374 * 13 11 10 16 16 N 1.31514 * 120.00255 * 359.97438 * 15 13 11 17 17 Si 1.86799 * 119.99873 * 179.97438 * 15 13 11 18 18 H 1.48497 * 109.47393 * 89.99416 * 17 15 13 19 19 H 1.48494 * 109.47178 * 209.99665 * 17 15 13 20 20 H 1.48501 * 109.47020 * 329.99469 * 17 15 13 21 21 C 1.48538 * 111.00123 * 187.27000 * 8 7 6 22 22 C 1.38219 * 120.00212 * 180.20759 * 2 1 3 23 23 C 1.50694 * 119.99922 * 0.02679 * 22 2 1 24 24 H 1.09006 * 109.46908 * 90.00297 * 1 2 3 25 25 H 1.09002 * 109.47301 * 209.99305 * 1 2 3 26 26 H 1.08994 * 109.47788 * 329.99827 * 1 2 3 27 27 H 1.08000 * 120.00276 * 0.02562 * 3 2 1 28 28 H 1.08002 * 120.00135 * 179.97438 * 4 3 2 29 29 H 1.08002 * 119.99905 * 179.97438 * 5 4 3 30 30 H 1.09001 * 109.47393 * 140.00421 * 7 6 5 31 31 H 1.09004 * 109.46904 * 20.00161 * 7 6 5 32 32 H 1.09004 * 109.91646 * 26.49394 * 9 8 7 33 33 H 1.09001 * 110.08341 * 265.29071 * 9 8 7 34 34 H 1.09004 * 110.30998 * 117.69119 * 10 9 8 35 35 H 1.08998 * 110.30811 * 239.85930 * 10 9 8 36 36 H 0.96700 * 114.00523 * 61.45046 * 12 11 10 37 37 H 0.96994 * 120.00103 * 180.02562 * 16 15 13 38 38 H 1.09007 * 110.66246 * 318.71191 * 21 8 7 39 39 H 1.08993 * 110.66671 * 81.67342 * 21 8 7 40 40 H 1.09004 * 109.47233 * 270.18263 * 23 22 2 41 41 H 1.08997 * 109.47416 * 30.18403 * 23 22 2 42 42 H 1.09000 * 109.47294 * 150.18839 * 23 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1982 1.1974 0.0000 4 6 3.5803 1.1974 -0.0005 5 6 4.2717 0.0001 -0.0016 6 6 3.5806 -1.1968 -0.0012 7 6 4.3341 -2.5019 -0.0017 8 7 4.3699 -3.0462 -1.3657 9 6 5.2404 -2.2300 -2.2394 10 6 5.9102 -3.1934 -3.2367 11 6 5.3907 -4.5977 -2.8524 12 8 4.2780 -4.9664 -3.6698 13 6 6.4924 -5.6208 -2.9562 14 1 6.8061 -6.1673 -2.0791 15 6 7.1000 -5.8589 -4.1707 16 7 6.7178 -5.1936 -5.2389 17 14 8.4661 -7.1264 -4.2992 18 1 7.8809 -8.4549 -4.6123 19 1 9.4066 -6.7329 -5.3788 20 1 9.1967 -7.1992 -3.0084 21 6 4.9509 -4.4132 -1.3784 22 6 2.1981 -1.1970 -0.0043 23 6 1.4446 -2.5020 -0.0097 24 1 -0.3633 -0.0001 -1.0277 25 1 -0.3634 -0.8901 0.5137 26 1 -0.3634 0.8899 0.5138 27 1 1.6582 2.1327 0.0004 28 1 4.1203 2.1327 -0.0010 29 1 5.3517 0.0002 -0.0024 30 1 3.8345 -3.2103 0.6591 31 1 5.3524 -2.3337 0.3491 32 1 6.0004 -1.7273 -1.6412 33 1 4.6447 -1.4930 -2.7781 34 1 5.6155 -2.9470 -4.2569 35 1 6.9945 -3.1500 -3.1344 36 1 4.4832 -5.0191 -4.6133 37 1 7.1449 -5.3613 -6.0934 38 1 5.8102 -4.4721 -0.7102 39 1 4.1995 -5.1530 -1.1028 40 1 1.2597 -2.8190 1.0167 41 1 0.4939 -2.3706 -0.5262 42 1 2.0354 -3.2606 -0.5233 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592524737.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:06:10 Heat of formation + Delta-G solvation = -47.819035 kcal Electronic energy + Delta-G solvation = -21727.104950 eV Core-core repulsion = 18670.557593 eV Total energy + Delta-G solvation = -3056.547358 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.89956 -39.67873 -36.67677 -34.19551 -34.15978 -33.80806 -31.03485 -29.83873 -28.66851 -27.24160 -26.83020 -25.49110 -22.31228 -21.59923 -21.42604 -21.02797 -18.97012 -17.31570 -16.94141 -16.85911 -16.52334 -16.07647 -15.92188 -15.44774 -14.93173 -14.60332 -14.51889 -14.02280 -13.80563 -13.72016 -13.52168 -13.29288 -13.29163 -13.11693 -12.95531 -12.79994 -12.57914 -12.54906 -12.43526 -12.24341 -12.13565 -11.73074 -11.63434 -11.52300 -11.04878 -10.59551 -10.10370 -9.52217 -9.34147 -9.20470 -8.20906 -6.37156 0.48685 0.54368 1.40396 1.42418 1.51503 2.38311 2.78613 3.03934 3.33219 3.79345 3.92888 4.00306 4.10989 4.15169 4.20072 4.21633 4.42938 4.44237 4.47716 4.56222 4.65784 4.74428 4.83639 4.85628 4.86315 4.90389 4.91895 5.03682 5.09787 5.15451 5.22547 5.34714 5.47692 5.49643 5.56446 5.64506 5.68010 5.77164 5.86886 5.93550 6.16500 6.23884 6.29403 6.69283 7.34941 7.48202 8.84551 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.034597 B = 0.004200 C = 0.004062 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 809.132619 B = 6665.385050 C = 6891.848859 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.102 4.102 3 C -0.126 4.126 4 C -0.130 4.130 5 C -0.130 4.130 6 C -0.085 4.085 7 C 0.085 3.915 8 N -0.507 5.507 9 C 0.053 3.947 10 C -0.119 4.119 11 C 0.241 3.759 12 O -0.589 6.589 13 C -0.563 4.563 14 H 0.056 0.944 15 C 0.030 3.970 16 N -0.912 5.912 17 Si 0.959 3.041 18 H -0.277 1.277 19 H -0.281 1.281 20 H -0.270 1.270 21 C 0.060 3.940 22 C -0.079 4.079 23 C -0.117 4.117 24 H 0.071 0.929 25 H 0.072 0.928 26 H 0.080 0.920 27 H 0.142 0.858 28 H 0.140 0.860 29 H 0.120 0.880 30 H 0.086 0.914 31 H 0.041 0.959 32 H 0.043 0.957 33 H 0.060 0.940 34 H 0.044 0.956 35 H 0.044 0.956 36 H 0.370 0.630 37 H 0.268 0.732 38 H 0.049 0.951 39 H 0.069 0.931 40 H 0.077 0.923 41 H 0.072 0.928 42 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.910 11.298 10.697 17.453 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.102 4.102 3 C -0.144 4.144 4 C -0.147 4.147 5 C -0.148 4.148 6 C -0.086 4.086 7 C -0.042 4.042 8 N -0.231 5.231 9 C -0.074 4.074 10 C -0.158 4.158 11 C 0.201 3.799 12 O -0.396 6.396 13 C -0.602 4.602 14 H 0.074 0.926 15 C -0.170 4.170 16 N -0.551 5.551 17 Si 0.785 3.215 18 H -0.202 1.202 19 H -0.206 1.206 20 H -0.194 1.194 21 C -0.067 4.067 22 C -0.079 4.079 23 C -0.173 4.173 24 H 0.089 0.911 25 H 0.091 0.909 26 H 0.099 0.901 27 H 0.160 0.840 28 H 0.158 0.842 29 H 0.138 0.862 30 H 0.104 0.896 31 H 0.059 0.941 32 H 0.061 0.939 33 H 0.079 0.921 34 H 0.063 0.937 35 H 0.062 0.938 36 H 0.219 0.781 37 H 0.077 0.923 38 H 0.067 0.933 39 H 0.088 0.912 40 H 0.095 0.905 41 H 0.091 0.909 42 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -8.718 11.306 10.923 17.976 hybrid contribution 2.193 -0.709 -0.751 2.424 sum -6.525 10.597 10.172 16.073 Atomic orbital electron populations 1.20826 0.89638 1.03617 1.02687 1.20115 0.97369 0.92421 1.00343 1.21292 0.94320 0.98046 1.00720 1.21313 0.94755 0.98051 1.00627 1.21180 0.99953 0.92435 1.01263 1.19678 0.93711 0.94288 1.00881 1.21211 0.98200 0.94187 0.90621 1.64728 1.48091 1.01769 1.08520 1.22708 0.94055 0.95675 0.95002 1.22724 0.98373 0.97039 0.97682 1.19562 0.83305 0.90238 0.86783 1.86133 1.38876 1.92453 1.22137 1.21893 1.19420 1.23393 0.95453 0.92615 1.25694 0.98722 0.97310 0.95304 1.69832 1.43391 1.41727 1.00136 0.85548 0.78922 0.79215 0.77864 1.20232 1.20632 1.19431 1.23035 0.97039 0.90239 0.96393 1.19822 0.92996 0.95855 0.99257 1.20851 0.99984 0.94241 1.02270 0.91072 0.90903 0.90101 0.83993 0.84214 0.86221 0.89599 0.94072 0.93865 0.92121 0.93713 0.93754 0.78136 0.92254 0.93261 0.91209 0.90487 0.90922 0.91785 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.96 9.19 71.23 0.65 -1.30 16 2 C -0.10 -2.44 5.88 -19.87 -0.12 -2.56 16 3 C -0.13 -2.75 9.70 22.27 0.22 -2.53 16 4 C -0.13 -2.97 10.05 22.27 0.22 -2.75 16 5 C -0.13 -3.49 9.46 22.27 0.21 -3.27 16 6 C -0.09 -2.52 4.95 -19.87 -0.10 -2.62 16 7 C 0.09 2.71 4.02 85.56 0.34 3.05 16 8 N -0.51 -19.69 4.58 -887.56 -4.07 -23.76 16 9 C 0.05 2.15 5.99 86.45 0.52 2.67 16 10 C -0.12 -5.71 5.26 31.47 0.17 -5.55 16 11 C 0.24 12.25 0.95 -10.34 -0.01 12.24 16 12 O -0.59 -31.97 13.09 -148.98 -1.95 -33.92 16 13 C -0.56 -30.61 8.14 25.60 0.21 -30.40 16 14 H 0.06 2.99 7.78 -2.91 -0.02 2.97 16 15 C 0.03 1.62 5.28 84.65 0.45 2.07 16 16 N -0.91 -49.63 11.02 21.45 0.24 -49.39 16 17 Si 0.96 42.39 29.54 68.60 2.03 44.42 16 18 H -0.28 -12.09 7.11 99.48 0.71 -11.38 16 19 H -0.28 -12.12 7.11 99.48 0.71 -11.41 16 20 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 21 C 0.06 2.63 5.67 86.65 0.49 3.12 16 22 C -0.08 -2.19 5.88 -19.87 -0.12 -2.31 16 23 C -0.12 -3.04 8.44 71.23 0.60 -2.44 16 24 H 0.07 1.23 8.14 -2.38 -0.02 1.21 16 25 H 0.07 1.20 6.72 -2.39 -0.02 1.18 16 26 H 0.08 1.10 8.09 -2.39 -0.02 1.08 16 27 H 0.14 2.28 8.06 -2.91 -0.02 2.26 16 28 H 0.14 2.46 8.06 -2.91 -0.02 2.44 16 29 H 0.12 3.01 8.04 -2.91 -0.02 2.99 16 30 H 0.09 2.56 7.27 -2.39 -0.02 2.54 16 31 H 0.04 1.27 7.68 -2.38 -0.02 1.25 16 32 H 0.04 1.58 7.57 -2.39 -0.02 1.57 16 33 H 0.06 2.44 8.14 -2.39 -0.02 2.42 16 34 H 0.04 2.28 7.99 -2.39 -0.02 2.26 16 35 H 0.04 2.21 7.84 -2.39 -0.02 2.19 16 36 H 0.37 20.50 7.48 -74.06 -0.55 19.95 16 37 H 0.27 13.90 8.31 -92.71 -0.77 13.13 16 38 H 0.05 2.07 7.92 -2.38 -0.02 2.05 16 39 H 0.07 3.04 8.14 -2.39 -0.02 3.02 16 40 H 0.08 1.70 8.14 -2.38 -0.02 1.68 16 41 H 0.07 1.70 6.72 -2.39 -0.02 1.68 16 42 H 0.06 2.01 6.34 -2.39 -0.02 1.99 16 Total: -1.00 -59.55 332.81 0.43 -59.12 By element: Atomic # 1 Polarization: 35.67 SS G_CDS: 0.45 Total: 36.12 kcal Atomic # 6 Polarization: -36.33 SS G_CDS: 3.74 Total: -32.60 kcal Atomic # 7 Polarization: -69.32 SS G_CDS: -3.83 Total: -73.15 kcal Atomic # 8 Polarization: -31.97 SS G_CDS: -1.95 Total: -33.92 kcal Atomic # 14 Polarization: 42.39 SS G_CDS: 2.03 Total: 44.42 kcal Total: -59.55 0.43 -59.12 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592524737.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.298 kcal (2) G-P(sol) polarization free energy of solvation -59.551 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.253 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.434 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.117 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.819 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds