Wall clock time and date at job start Mon Mar 30 2020 01:37:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86805 * 119.99814 * 2 1 4 4 H 1.48500 * 109.47204 * 264.47645 * 3 2 1 5 5 H 1.48503 * 109.47122 * 24.47577 * 3 2 1 6 6 H 1.48507 * 109.46952 * 144.47176 * 3 2 1 7 7 C 1.37878 * 120.00158 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00033 * 1.58199 * 7 2 1 9 9 C 1.50704 * 119.99725 * 181.58061 * 7 2 1 10 10 C 1.52998 * 115.54859 * 88.31863 * 9 7 2 11 11 N 1.46496 * 109.47224 * 64.98140 * 10 9 7 12 12 C 1.34780 * 119.99930 * 183.62627 * 11 10 9 13 13 O 1.21284 * 120.00250 * 5.08671 * 12 11 10 14 14 C 1.50697 * 120.00017 * 185.09007 * 12 11 10 15 15 H 1.09001 * 109.47214 * 38.87373 * 14 12 11 16 16 C 1.53083 * 109.46889 * 278.88423 * 14 12 11 17 17 C 1.53452 * 109.49021 * 239.99348 * 16 14 12 18 18 H 1.09007 * 110.70674 * 177.10170 * 17 16 14 19 19 C 1.52188 * 107.79747 * 55.86769 * 17 16 14 20 20 C 1.33233 * 113.67895 * 301.56066 * 19 17 16 21 21 C 1.52184 * 113.68095 * 0.27442 * 20 19 17 22 22 H 1.09004 * 110.72078 * 179.40084 * 21 20 19 23 23 C 1.53448 * 107.79967 * 301.29552 * 21 20 19 24 24 C 1.53438 * 108.43890 * 299.41025 * 17 16 14 25 25 C 1.52999 * 117.49779 * 233.98551 * 9 7 2 26 26 C 1.52999 * 117.50008 * 302.64690 * 9 7 2 27 27 H 0.97005 * 120.00388 * 359.97438 * 1 2 3 28 28 H 1.08996 * 109.47393 * 304.97971 * 10 9 7 29 29 H 1.09007 * 109.46835 * 184.98040 * 10 9 7 30 30 H 0.97001 * 120.00476 * 3.62396 * 11 10 9 31 31 H 1.08997 * 109.47033 * 119.98870 * 16 14 12 32 32 H 1.08999 * 109.46874 * 359.97438 * 16 14 12 33 33 H 1.08005 * 123.16119 * 121.56754 * 19 17 16 34 34 H 1.08008 * 123.15884 * 180.02562 * 20 19 17 35 35 H 1.09005 * 109.46815 * 175.87574 * 23 21 20 36 36 H 1.09003 * 109.46584 * 295.85915 * 23 21 20 37 37 H 1.09001 * 109.47043 * 180.59636 * 24 17 16 38 38 H 1.09011 * 109.46735 * 300.58399 * 24 17 16 39 39 H 1.08999 * 117.49938 * 215.00568 * 25 9 7 40 40 H 1.09007 * 117.49601 * 0.02633 * 25 9 7 41 41 H 1.08999 * 117.50084 * 359.97438 * 26 9 7 42 42 H 1.08994 * 117.49885 * 144.99965 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.6133 1.9791 -1.3936 5 1 1.3930 2.6836 0.5801 6 1 3.4834 1.4768 0.8136 7 6 2.0045 -1.1940 0.0005 8 1 1.4648 -2.1292 -0.0249 9 6 3.5111 -1.1942 0.0365 10 6 4.1378 -1.1721 1.4321 11 7 3.8044 -2.4124 2.1368 12 6 4.1898 -2.5848 3.4167 13 8 4.7311 -1.6788 4.0144 14 6 3.9483 -3.9033 4.1053 15 1 4.1272 -4.7179 3.4035 16 6 2.5004 -3.9636 4.5986 17 6 2.4858 -4.1394 6.1230 18 1 1.4636 -4.1337 6.5018 19 6 3.2915 -3.0002 6.7304 20 6 4.5517 -2.9477 6.3011 21 6 4.9003 -4.0348 5.2948 22 1 5.9362 -3.9407 4.9687 23 6 4.6495 -5.3923 5.9649 24 6 3.1989 -5.4538 6.4668 25 6 4.2437 -1.9775 -1.0546 26 6 4.2445 -0.4469 -1.0791 27 1 -0.4851 0.8401 0.0004 28 1 3.7496 -0.3209 1.9914 29 1 5.2207 -1.0848 1.3427 30 1 3.3062 -3.1097 1.6823 31 1 1.9921 -4.8067 4.1308 32 1 1.9880 -3.0384 4.3351 33 1 2.8804 -2.3000 7.4426 34 1 5.2582 -2.2012 6.6328 35 1 4.8209 -6.1909 5.2432 36 1 5.3299 -5.5124 6.8080 37 1 3.1888 -5.6009 7.5468 38 1 2.6843 -6.2838 5.9824 39 1 5.1722 -2.4771 -0.7782 40 1 3.6360 -2.4924 -1.7987 41 1 3.6373 0.0444 -1.8394 42 1 5.1734 0.0603 -0.8188 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000593143980.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:37:32 Heat of formation + Delta-G solvation = -7.017075 kcal Electronic energy + Delta-G solvation = -21899.714381 eV Core-core repulsion = 18844.936330 eV Total energy + Delta-G solvation = -3054.778052 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.86401 -38.41249 -36.92243 -33.43036 -32.13718 -31.18121 -30.91881 -30.63918 -26.72620 -25.26477 -23.04168 -22.15360 -21.76629 -21.30355 -19.72900 -19.15751 -17.13565 -16.74412 -16.32432 -16.00648 -15.48876 -15.07071 -14.57003 -14.25158 -14.19646 -13.48719 -12.94649 -12.77946 -12.57477 -12.47997 -12.26102 -12.15340 -12.11342 -12.08478 -11.69031 -11.47706 -11.18245 -10.82014 -10.55118 -10.47006 -10.19592 -10.09420 -9.83497 -9.69109 -9.26045 -9.18408 -8.69650 -8.64646 -8.52920 -8.24185 -6.16574 -4.21067 2.48424 3.18270 3.28070 3.38330 3.43116 3.75408 4.39268 4.55665 4.69120 4.70842 4.90141 5.10109 5.12426 5.20971 5.26499 5.31956 5.38565 5.49932 5.56215 5.57008 5.67335 5.77799 5.90018 6.00486 6.03833 6.04873 6.08905 6.11322 6.19761 6.23162 6.25151 6.32108 6.39806 6.52718 6.69032 6.81850 6.98953 7.07013 7.13613 7.18002 7.66827 8.22186 8.39967 8.83138 8.83638 9.46637 10.94772 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.024910 B = 0.004993 C = 0.004761 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1123.759727 B = 5606.969313 C = 5879.159848 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.080 3.920 3 Si 0.881 3.119 4 H -0.277 1.277 5 H -0.295 1.295 6 H -0.260 1.260 7 C -0.490 4.490 8 H 0.078 0.922 9 C -0.015 4.015 10 C 0.157 3.843 11 N -0.704 5.704 12 C 0.510 3.490 13 O -0.548 6.548 14 C -0.100 4.100 15 H 0.091 0.909 16 C -0.104 4.104 17 C -0.057 4.057 18 H 0.080 0.920 19 C -0.187 4.187 20 C -0.115 4.115 21 C -0.044 4.044 22 H 0.080 0.920 23 C -0.111 4.111 24 C -0.111 4.111 25 C -0.179 4.179 26 C -0.196 4.196 27 H 0.266 0.734 28 H 0.064 0.936 29 H 0.040 0.960 30 H 0.402 0.598 31 H 0.073 0.927 32 H 0.073 0.927 33 H 0.115 0.885 34 H 0.117 0.883 35 H 0.065 0.935 36 H 0.064 0.936 37 H 0.062 0.938 38 H 0.064 0.936 39 H 0.072 0.928 40 H 0.088 0.912 41 H 0.091 0.909 42 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.778 -10.546 9.740 16.328 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.123 4.123 3 Si 0.709 3.291 4 H -0.203 1.203 5 H -0.222 1.222 6 H -0.185 1.185 7 C -0.527 4.527 8 H 0.096 0.904 9 C -0.017 4.017 10 C 0.033 3.967 11 N -0.353 5.353 12 C 0.295 3.705 13 O -0.426 6.426 14 C -0.121 4.121 15 H 0.109 0.891 16 C -0.142 4.142 17 C -0.076 4.076 18 H 0.098 0.902 19 C -0.205 4.205 20 C -0.133 4.133 21 C -0.062 4.062 22 H 0.099 0.901 23 C -0.148 4.148 24 C -0.149 4.149 25 C -0.216 4.216 26 C -0.234 4.234 27 H 0.075 0.925 28 H 0.082 0.918 29 H 0.058 0.942 30 H 0.237 0.763 31 H 0.092 0.908 32 H 0.092 0.908 33 H 0.132 0.868 34 H 0.135 0.865 35 H 0.083 0.917 36 H 0.083 0.917 37 H 0.081 0.919 38 H 0.082 0.918 39 H 0.091 0.909 40 H 0.106 0.894 41 H 0.109 0.891 42 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 8.000 -9.782 10.130 16.195 hybrid contribution 0.082 0.872 -0.426 0.974 sum 8.082 -8.910 9.704 15.455 Atomic orbital electron populations 1.69877 1.06357 1.27286 1.49644 1.24963 0.94592 0.99116 0.93619 0.86852 0.80328 0.83217 0.78674 1.20257 1.22204 1.18482 1.20164 0.86051 0.94499 1.51957 0.90393 1.19646 0.95183 1.00640 0.86200 1.21091 0.96390 0.86236 0.92950 1.45866 1.56532 1.20573 1.12299 1.20498 0.78632 0.89567 0.81756 1.90634 1.44041 1.43310 1.64628 1.21389 0.97327 0.96131 0.97261 0.89119 1.21656 0.94253 1.03141 0.95129 1.20620 0.98644 0.93668 0.94662 0.90188 1.23670 0.95537 0.99313 1.01961 1.23597 0.96918 0.96963 0.95772 1.20388 0.98638 0.93957 0.93267 0.90147 1.21748 0.96858 0.96123 1.00104 1.21753 0.95544 0.96790 1.00774 1.22849 1.01161 0.93279 1.04297 1.22968 1.01539 0.94664 1.04195 0.92468 0.91755 0.94158 0.76331 0.90816 0.90806 0.86753 0.86534 0.91654 0.91729 0.91936 0.91751 0.90921 0.89394 0.89076 0.90756 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.53 13.96 55.43 0.77 -25.76 16 2 C 0.08 2.23 5.47 -17.82 -0.10 2.14 16 3 Si 0.88 21.69 24.67 -169.99 -4.19 17.50 16 4 H -0.28 -6.59 6.93 56.52 0.39 -6.20 16 5 H -0.30 -7.38 7.11 56.52 0.40 -6.98 16 6 H -0.26 -6.25 6.18 56.52 0.35 -5.90 16 7 C -0.49 -12.87 9.30 -34.44 -0.32 -13.19 16 8 H 0.08 2.20 8.06 -52.49 -0.42 1.78 16 9 C -0.02 -0.34 0.86 -155.66 -0.13 -0.48 16 10 C 0.16 3.34 5.26 -4.05 -0.02 3.32 16 11 N -0.70 -13.13 5.46 -60.30 -0.33 -13.46 16 12 C 0.51 9.17 6.57 -10.99 -0.07 9.10 16 13 O -0.55 -11.59 14.60 5.55 0.08 -11.51 16 14 C -0.10 -1.36 2.50 -91.77 -0.23 -1.59 16 15 H 0.09 1.05 8.14 -51.93 -0.42 0.63 16 16 C -0.10 -1.38 5.34 -26.45 -0.14 -1.52 16 17 C -0.06 -0.68 3.57 -90.57 -0.32 -1.01 16 18 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 19 C -0.19 -2.51 9.82 -35.32 -0.35 -2.85 16 20 C -0.11 -1.61 7.79 -35.32 -0.28 -1.89 16 21 C -0.04 -0.56 2.82 -90.85 -0.26 -0.81 16 22 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 23 C -0.11 -1.11 5.70 -26.18 -0.15 -1.26 16 24 C -0.11 -1.09 5.71 -26.18 -0.15 -1.24 16 25 C -0.18 -3.40 9.96 -26.69 -0.27 -3.67 16 26 C -0.20 -4.04 7.53 -26.69 -0.20 -4.24 16 27 H 0.27 7.48 8.31 -40.82 -0.34 7.14 16 28 H 0.06 1.55 7.02 -51.93 -0.36 1.18 16 29 H 0.04 0.82 8.09 -51.93 -0.42 0.40 16 30 H 0.40 6.94 8.44 -40.82 -0.34 6.60 16 31 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 32 H 0.07 1.18 7.59 -51.93 -0.39 0.78 16 33 H 0.11 1.45 8.06 -52.48 -0.42 1.03 16 34 H 0.12 1.68 8.06 -52.48 -0.42 1.26 16 35 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 36 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 37 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 38 H 0.06 0.56 8.14 -51.92 -0.42 0.14 16 39 H 0.07 1.23 8.14 -51.93 -0.42 0.80 16 40 H 0.09 1.67 8.14 -51.92 -0.42 1.25 16 41 H 0.09 1.98 6.83 -51.93 -0.35 1.62 16 42 H 0.07 1.40 8.14 -51.93 -0.42 0.98 16 LS Contribution 327.13 15.07 4.93 4.93 Total: -1.00 -30.30 327.13 -8.72 -39.02 By element: Atomic # 1 Polarization: 15.46 SS G_CDS: -6.99 Total: 8.47 kcal Atomic # 6 Polarization: -16.21 SS G_CDS: -2.98 Total: -19.19 kcal Atomic # 7 Polarization: -39.66 SS G_CDS: 0.44 Total: -39.21 kcal Atomic # 8 Polarization: -11.59 SS G_CDS: 0.08 Total: -11.51 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -4.19 Total: 17.50 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -30.30 -8.72 -39.02 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593143980.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.004 kcal (2) G-P(sol) polarization free energy of solvation -30.304 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.700 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.717 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.021 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.017 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds