Wall clock time and date at job start Mon Mar 30 2020 01:37:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86805 * 119.99814 * 2 1 4 4 H 1.48500 * 109.47204 * 264.47645 * 3 2 1 5 5 H 1.48503 * 109.47122 * 24.47577 * 3 2 1 6 6 H 1.48507 * 109.46952 * 144.47176 * 3 2 1 7 7 C 1.37878 * 120.00158 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00033 * 1.58199 * 7 2 1 9 9 C 1.50704 * 119.99725 * 181.58061 * 7 2 1 10 10 C 1.52998 * 115.54859 * 88.31863 * 9 7 2 11 11 N 1.46496 * 109.47224 * 64.98140 * 10 9 7 12 12 C 1.34780 * 119.99930 * 183.62627 * 11 10 9 13 13 O 1.21284 * 120.00250 * 5.08671 * 12 11 10 14 14 C 1.50697 * 120.00017 * 185.09007 * 12 11 10 15 15 H 1.09001 * 109.47214 * 38.87373 * 14 12 11 16 16 C 1.53083 * 109.46889 * 278.88423 * 14 12 11 17 17 C 1.53452 * 109.49021 * 239.99348 * 16 14 12 18 18 H 1.09007 * 110.70674 * 177.10170 * 17 16 14 19 19 C 1.52188 * 107.79747 * 55.86769 * 17 16 14 20 20 C 1.33233 * 113.67895 * 301.56066 * 19 17 16 21 21 C 1.52184 * 113.68095 * 0.27442 * 20 19 17 22 22 H 1.09004 * 110.72078 * 179.40084 * 21 20 19 23 23 C 1.53448 * 107.79967 * 301.29552 * 21 20 19 24 24 C 1.53438 * 108.43890 * 299.41025 * 17 16 14 25 25 C 1.52999 * 117.49779 * 233.98551 * 9 7 2 26 26 C 1.52999 * 117.50008 * 302.64690 * 9 7 2 27 27 H 0.97005 * 120.00388 * 359.97438 * 1 2 3 28 28 H 1.08996 * 109.47393 * 304.97971 * 10 9 7 29 29 H 1.09007 * 109.46835 * 184.98040 * 10 9 7 30 30 H 0.97001 * 120.00476 * 3.62396 * 11 10 9 31 31 H 1.08997 * 109.47033 * 119.98870 * 16 14 12 32 32 H 1.08999 * 109.46874 * 359.97438 * 16 14 12 33 33 H 1.08005 * 123.16119 * 121.56754 * 19 17 16 34 34 H 1.08008 * 123.15884 * 180.02562 * 20 19 17 35 35 H 1.09005 * 109.46815 * 175.87574 * 23 21 20 36 36 H 1.09003 * 109.46584 * 295.85915 * 23 21 20 37 37 H 1.09001 * 109.47043 * 180.59636 * 24 17 16 38 38 H 1.09011 * 109.46735 * 300.58399 * 24 17 16 39 39 H 1.08999 * 117.49938 * 215.00568 * 25 9 7 40 40 H 1.09007 * 117.49601 * 0.02633 * 25 9 7 41 41 H 1.08999 * 117.50084 * 359.97438 * 26 9 7 42 42 H 1.08994 * 117.49885 * 144.99965 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.6133 1.9791 -1.3936 5 1 1.3930 2.6836 0.5801 6 1 3.4834 1.4768 0.8136 7 6 2.0045 -1.1940 0.0005 8 1 1.4648 -2.1292 -0.0249 9 6 3.5111 -1.1942 0.0365 10 6 4.1378 -1.1721 1.4321 11 7 3.8044 -2.4124 2.1368 12 6 4.1898 -2.5848 3.4167 13 8 4.7311 -1.6788 4.0144 14 6 3.9483 -3.9033 4.1053 15 1 4.1272 -4.7179 3.4035 16 6 2.5004 -3.9636 4.5986 17 6 2.4858 -4.1394 6.1230 18 1 1.4636 -4.1337 6.5018 19 6 3.2915 -3.0002 6.7304 20 6 4.5517 -2.9477 6.3011 21 6 4.9003 -4.0348 5.2948 22 1 5.9362 -3.9407 4.9687 23 6 4.6495 -5.3923 5.9649 24 6 3.1989 -5.4538 6.4668 25 6 4.2437 -1.9775 -1.0546 26 6 4.2445 -0.4469 -1.0791 27 1 -0.4851 0.8401 0.0004 28 1 3.7496 -0.3209 1.9914 29 1 5.2207 -1.0848 1.3427 30 1 3.3062 -3.1097 1.6823 31 1 1.9921 -4.8067 4.1308 32 1 1.9880 -3.0384 4.3351 33 1 2.8804 -2.3000 7.4426 34 1 5.2582 -2.2012 6.6328 35 1 4.8209 -6.1909 5.2432 36 1 5.3299 -5.5124 6.8080 37 1 3.1888 -5.6009 7.5468 38 1 2.6843 -6.2838 5.9824 39 1 5.1722 -2.4771 -0.7782 40 1 3.6360 -2.4924 -1.7987 41 1 3.6373 0.0444 -1.8394 42 1 5.1734 0.0603 -0.8188 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000593143980.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:37:31 Heat of formation + Delta-G solvation = -25.489470 kcal Electronic energy + Delta-G solvation = -21900.515404 eV Core-core repulsion = 18844.936330 eV Total energy + Delta-G solvation = -3055.579075 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.97790 -39.83256 -38.54929 -34.99916 -34.22777 -32.28288 -31.88633 -31.56065 -28.43796 -27.15365 -24.17097 -23.37928 -23.10729 -22.27274 -21.25548 -20.83434 -18.68571 -17.98248 -17.79835 -17.14569 -16.90327 -16.74874 -15.86946 -15.80138 -15.40357 -15.01850 -14.78369 -14.31804 -13.90666 -13.83212 -13.72560 -13.16004 -13.11585 -13.08618 -13.05015 -12.88517 -12.64903 -12.36091 -12.16705 -12.01539 -11.61704 -11.55194 -11.04017 -11.00145 -10.78431 -10.68832 -10.62867 -10.30243 -9.86504 -9.70036 -8.31987 -6.37505 1.30438 1.36561 1.42007 1.45606 1.76352 2.32940 2.34722 3.03523 3.22888 3.59822 3.68882 3.74368 4.01463 4.12079 4.19632 4.29950 4.34807 4.37862 4.40124 4.42887 4.51077 4.55620 4.58649 4.63268 4.78237 4.83854 4.85206 5.08111 5.09634 5.13980 5.18341 5.20082 5.23000 5.30067 5.37831 5.43070 5.47770 5.61990 5.68530 5.80614 6.08280 6.26550 6.69525 6.77826 7.32661 7.39709 8.82601 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.024910 B = 0.004993 C = 0.004761 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1123.759727 B = 5606.969313 C = 5879.159848 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.943 5.943 2 C 0.026 3.974 3 Si 0.929 3.071 4 H -0.260 1.260 5 H -0.305 1.305 6 H -0.251 1.251 7 C -0.476 4.476 8 H 0.047 0.953 9 C -0.041 4.041 10 C 0.167 3.833 11 N -0.704 5.704 12 C 0.505 3.495 13 O -0.584 6.584 14 C -0.092 4.092 15 H 0.121 0.879 16 C -0.103 4.103 17 C -0.057 4.057 18 H 0.088 0.912 19 C -0.195 4.195 20 C -0.134 4.134 21 C -0.043 4.043 22 H 0.076 0.924 23 C -0.105 4.105 24 C -0.106 4.106 25 C -0.148 4.148 26 C -0.197 4.197 27 H 0.264 0.736 28 H 0.028 0.972 29 H 0.055 0.945 30 H 0.409 0.591 31 H 0.099 0.901 32 H 0.037 0.963 33 H 0.113 0.887 34 H 0.102 0.898 35 H 0.086 0.914 36 H 0.072 0.928 37 H 0.071 0.929 38 H 0.084 0.916 39 H 0.105 0.895 40 H 0.087 0.913 41 H 0.078 0.922 42 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.534 -12.591 9.665 18.516 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.172 4.172 3 Si 0.756 3.244 4 H -0.185 1.185 5 H -0.232 1.232 6 H -0.175 1.175 7 C -0.514 4.514 8 H 0.065 0.935 9 C -0.043 4.043 10 C 0.042 3.958 11 N -0.353 5.353 12 C 0.293 3.707 13 O -0.465 6.465 14 C -0.114 4.114 15 H 0.139 0.861 16 C -0.141 4.141 17 C -0.076 4.076 18 H 0.106 0.894 19 C -0.213 4.213 20 C -0.153 4.153 21 C -0.062 4.062 22 H 0.094 0.906 23 C -0.143 4.143 24 C -0.144 4.144 25 C -0.185 4.185 26 C -0.235 4.235 27 H 0.073 0.927 28 H 0.046 0.954 29 H 0.073 0.927 30 H 0.245 0.755 31 H 0.117 0.883 32 H 0.056 0.944 33 H 0.131 0.869 34 H 0.120 0.880 35 H 0.105 0.895 36 H 0.091 0.909 37 H 0.090 0.910 38 H 0.103 0.897 39 H 0.123 0.877 40 H 0.106 0.894 41 H 0.097 0.903 42 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 9.775 -11.854 10.042 18.355 hybrid contribution -0.486 1.493 -0.385 1.616 sum 9.289 -10.361 9.658 16.939 Atomic orbital electron populations 1.70003 1.07958 1.27817 1.52494 1.25684 0.95105 1.02334 0.94057 0.86058 0.79325 0.79560 0.79470 1.18515 1.23249 1.17528 1.20352 0.88556 0.92907 1.49563 0.93467 1.19475 0.92864 1.04381 0.87538 1.20797 0.96825 0.86185 0.91964 1.45881 1.56762 1.19909 1.12761 1.21335 0.77359 0.90830 0.81210 1.90616 1.45576 1.45006 1.65261 1.21465 0.97843 0.94176 0.97869 0.86056 1.21679 0.93699 1.02293 0.96449 1.20691 0.99193 0.94277 0.93394 0.89365 1.23923 0.95667 0.99913 1.01813 1.23704 0.97109 0.97634 0.96812 1.20437 0.98066 0.95142 0.92536 0.90550 1.21758 0.97174 0.94610 1.00714 1.21758 0.95211 0.95752 1.01652 1.22886 1.01475 0.92511 1.01601 1.23032 1.01833 0.96067 1.02556 0.92722 0.95405 0.92667 0.75517 0.88304 0.94449 0.86949 0.88036 0.89529 0.90886 0.91041 0.89750 0.87680 0.89409 0.90314 0.88459 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.67 13.96 21.45 0.30 -57.37 16 2 C 0.03 1.49 5.47 84.66 0.46 1.95 16 3 Si 0.93 45.01 24.67 68.60 1.69 46.70 16 4 H -0.26 -11.81 6.93 99.48 0.69 -11.12 16 5 H -0.30 -15.13 7.11 99.48 0.71 -14.42 16 6 H -0.25 -11.70 6.18 99.48 0.61 -11.09 16 7 C -0.48 -25.30 9.30 25.60 0.24 -25.06 16 8 H 0.05 2.74 8.06 -2.91 -0.02 2.71 16 9 C -0.04 -1.77 0.86 -52.93 -0.05 -1.82 16 10 C 0.17 6.94 5.26 86.38 0.45 7.40 16 11 N -0.70 -25.69 5.46 -463.07 -2.53 -28.22 16 12 C 0.50 17.88 6.57 87.66 0.58 18.45 16 13 O -0.58 -24.97 14.60 -3.04 -0.04 -25.01 16 14 C -0.09 -2.35 2.50 -11.54 -0.03 -2.38 16 15 H 0.12 2.36 8.14 -2.39 -0.02 2.34 16 16 C -0.10 -2.58 5.34 30.77 0.16 -2.41 16 17 C -0.06 -1.25 3.57 -10.76 -0.04 -1.29 16 18 H 0.09 1.78 8.14 -2.38 -0.02 1.76 16 19 C -0.20 -5.18 9.82 25.03 0.25 -4.94 16 20 C -0.13 -3.78 7.79 25.03 0.20 -3.58 16 21 C -0.04 -1.02 2.82 -10.94 -0.03 -1.05 16 22 H 0.08 1.86 8.14 -2.39 -0.02 1.84 16 23 C -0.11 -1.73 5.70 30.95 0.18 -1.56 16 24 C -0.11 -1.71 5.71 30.95 0.18 -1.54 16 25 C -0.15 -5.16 9.96 30.62 0.30 -4.85 16 26 C -0.20 -7.60 7.53 30.62 0.23 -7.37 16 27 H 0.26 15.39 8.31 -92.70 -0.77 14.62 16 28 H 0.03 1.35 7.02 -2.39 -0.02 1.33 16 29 H 0.06 2.13 8.09 -2.38 -0.02 2.11 16 30 H 0.41 13.66 8.44 -92.71 -0.78 12.88 16 31 H 0.10 1.96 8.14 -2.39 -0.02 1.94 16 32 H 0.04 1.20 7.59 -2.39 -0.02 1.18 16 33 H 0.11 2.91 8.06 -2.91 -0.02 2.88 16 34 H 0.10 3.06 8.06 -2.91 -0.02 3.04 16 35 H 0.09 1.10 8.14 -2.38 -0.02 1.08 16 36 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 37 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 38 H 0.08 1.07 8.14 -2.38 -0.02 1.05 16 39 H 0.10 3.04 8.14 -2.39 -0.02 3.02 16 40 H 0.09 3.09 8.14 -2.38 -0.02 3.07 16 41 H 0.08 3.24 6.83 -2.39 -0.02 3.23 16 42 H 0.10 3.32 8.14 -2.39 -0.02 3.30 16 Total: -1.00 -67.66 327.13 2.61 -65.06 By element: Atomic # 1 Polarization: 28.78 SS G_CDS: 0.10 Total: 28.88 kcal Atomic # 6 Polarization: -33.13 SS G_CDS: 3.08 Total: -30.05 kcal Atomic # 7 Polarization: -83.36 SS G_CDS: -2.23 Total: -85.59 kcal Atomic # 8 Polarization: -24.97 SS G_CDS: -0.04 Total: -25.01 kcal Atomic # 14 Polarization: 45.01 SS G_CDS: 1.69 Total: 46.70 kcal Total: -67.66 2.61 -65.06 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593143980.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.570 kcal (2) G-P(sol) polarization free energy of solvation -67.665 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.095 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.606 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.059 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.489 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds