Wall clock time and date at job start Mon Mar 30 2020 02:51:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38310 * 119.92512 * 2 1 4 4 C 1.38080 * 120.07444 * 179.71820 * 3 2 1 5 5 C 1.50698 * 120.03830 * 180.27326 * 4 3 2 6 6 C 1.38936 * 119.92288 * 0.48449 * 4 3 2 7 7 N 1.39679 * 120.07517 * 179.78867 * 6 4 3 8 8 C 1.46494 * 120.00110 * 173.66460 * 7 6 4 9 9 C 1.53002 * 109.47197 * 176.85980 * 8 7 6 10 10 C 1.50698 * 115.54795 * 281.32427 * 9 8 7 11 11 H 1.08000 * 120.00213 * 144.08259 * 10 9 8 12 12 C 1.37880 * 119.99990 * 324.07396 * 10 9 8 13 13 N 1.31516 * 119.99720 * 337.05290 * 12 10 9 14 14 Si 1.86795 * 120.00113 * 157.06157 * 12 10 9 15 15 H 1.48502 * 109.47532 * 59.99397 * 14 12 10 16 16 H 1.48503 * 109.47510 * 179.97438 * 14 12 10 17 17 H 1.48503 * 109.46794 * 299.99790 * 14 12 10 18 18 C 1.52994 * 117.50092 * 135.61287 * 9 8 7 19 19 C 1.53001 * 117.49706 * 66.98727 * 9 8 7 20 20 C 1.38887 * 119.84858 * 359.51748 * 6 4 3 21 21 C 1.38116 * 119.92924 * 0.24890 * 20 6 4 22 22 C 1.50710 * 119.96528 * 180.02562 * 21 20 6 23 23 O 1.42898 * 109.46638 * 0.02562 * 22 21 20 24 24 H 1.08997 * 109.47558 * 270.02431 * 1 2 3 25 25 H 1.09003 * 109.47221 * 30.02741 * 1 2 3 26 26 H 1.09000 * 109.47129 * 150.02331 * 1 2 3 27 27 H 1.07998 * 119.96218 * 359.97438 * 3 2 1 28 28 H 1.08993 * 109.47257 * 264.11528 * 5 4 3 29 29 H 1.08999 * 109.47002 * 24.11895 * 5 4 3 30 30 H 1.09005 * 109.47126 * 144.11377 * 5 4 3 31 31 H 0.97005 * 119.99378 * 353.66757 * 7 6 4 32 32 H 1.09005 * 109.47040 * 296.85694 * 8 7 6 33 33 H 1.09001 * 109.47341 * 56.85877 * 8 7 6 34 34 H 0.97001 * 119.99499 * 185.15355 * 13 12 10 35 35 H 1.09007 * 117.49813 * 359.97438 * 18 9 8 36 36 H 1.08999 * 117.50371 * 145.02481 * 18 9 8 37 37 H 1.09002 * 117.49975 * 214.98214 * 19 9 8 38 38 H 1.08997 * 117.50009 * 359.97438 * 19 9 8 39 39 H 1.08002 * 120.03288 * 180.22861 * 20 6 4 40 40 H 1.08996 * 109.46872 * 119.99929 * 22 21 20 41 41 H 1.09000 * 109.46386 * 240.00171 * 22 21 20 42 42 H 0.96706 * 113.99691 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1970 1.1987 0.0000 4 6 3.5777 1.2023 0.0059 5 6 4.3287 2.5088 0.0121 6 6 4.2740 0.0000 0.0016 7 7 5.6708 -0.0001 0.0031 8 6 6.4031 -1.2616 0.1386 9 6 7.9056 -0.9931 0.0320 10 6 8.4331 -0.7963 -1.3658 11 1 9.2264 -0.0866 -1.5488 12 6 7.9031 -1.5224 -2.4113 13 7 7.2949 -2.6647 -2.1767 14 14 8.0491 -0.8839 -4.1606 15 1 9.4835 -0.7377 -4.5162 16 1 7.4037 -1.8427 -5.0931 17 1 7.3766 0.4361 -4.2634 18 6 8.8209 -1.6885 1.0416 19 6 8.5602 -0.1851 1.1543 20 6 3.5779 -1.2019 0.0016 21 6 2.1968 -1.1983 0.0006 22 6 1.4406 -2.5020 0.0012 23 8 2.3672 -3.5899 0.0033 24 1 -0.3634 0.0004 1.0276 25 1 -0.3634 0.8898 -0.5143 26 1 -0.3633 -0.8902 -0.5135 27 1 1.6551 2.1329 -0.0004 28 1 4.6054 2.7737 -1.0083 29 1 3.6947 3.2903 0.4312 30 1 5.2291 2.4076 0.6181 31 1 6.1558 0.8353 -0.0856 32 1 6.1816 -1.7079 1.1081 33 1 6.0990 -1.9452 -0.6541 34 1 6.9882 -3.2117 -2.9168 35 1 8.3526 -2.3371 1.7821 36 1 9.8049 -2.0041 0.6949 37 1 9.3727 0.4885 0.8817 38 1 7.9203 0.1556 1.9684 39 1 4.1161 -2.1382 0.0020 40 1 0.8133 -2.5577 0.8907 41 1 0.8146 -2.5591 -0.8893 42 1 1.9496 -4.4621 0.0034 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594707450.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:51:05 Heat of formation + Delta-G solvation = -9.599268 kcal Electronic energy + Delta-G solvation = -21624.163335 eV Core-core repulsion = 18569.273311 eV Total energy + Delta-G solvation = -3054.890024 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -39.46304 -37.19229 -36.46464 -34.55250 -32.39724 -32.21885 -30.53687 -28.08100 -26.65137 -25.57383 -24.89183 -23.41016 -21.31853 -21.10855 -19.48906 -19.02335 -17.25771 -16.67542 -15.92098 -15.06219 -14.92358 -14.71592 -14.27770 -13.93694 -13.72264 -13.51226 -13.27411 -13.13543 -12.94274 -12.67020 -12.16055 -12.12883 -11.73300 -11.68069 -11.53916 -11.18136 -10.91344 -10.80735 -10.60998 -10.49476 -10.34761 -10.25758 -10.06055 -9.38337 -9.34844 -8.93575 -8.74544 -8.07761 -8.04475 -6.48593 -6.11915 -4.09132 1.90551 2.16419 3.26361 3.33970 3.37333 4.28991 4.33563 4.36784 4.42975 4.95424 5.16127 5.23158 5.39308 5.49036 5.51680 5.53513 5.58089 5.68925 5.80337 5.82478 5.98641 6.01746 6.04327 6.17650 6.32277 6.39277 6.48586 6.53491 6.60604 6.64376 6.70984 6.90777 6.94004 7.03490 7.08645 7.20054 7.30991 7.53346 7.57191 7.83054 7.93613 8.26673 8.37047 8.65432 8.85079 9.46656 10.88910 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.015380 B = 0.005856 C = 0.005602 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1820.065280 B = 4780.202238 C = 4996.987126 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 C -0.166 4.166 3 C -0.071 4.071 4 C -0.179 4.179 5 C -0.101 4.101 6 C 0.231 3.769 7 N -0.720 5.720 8 C 0.148 3.852 9 C 0.043 3.957 10 C -0.502 4.502 11 H 0.061 0.939 12 C 0.081 3.919 13 N -0.862 5.862 14 Si 0.885 3.115 15 H -0.277 1.277 16 H -0.287 1.287 17 H -0.275 1.275 18 C -0.194 4.194 19 C -0.211 4.211 20 C -0.170 4.170 21 C -0.053 4.053 22 C 0.121 3.879 23 O -0.562 6.562 24 H 0.057 0.943 25 H 0.057 0.943 26 H 0.055 0.945 27 H 0.112 0.888 28 H 0.061 0.939 29 H 0.058 0.942 30 H 0.059 0.941 31 H 0.396 0.604 32 H 0.023 0.977 33 H 0.112 0.888 34 H 0.265 0.735 35 H 0.065 0.935 36 H 0.079 0.921 37 H 0.075 0.925 38 H 0.067 0.933 39 H 0.135 0.865 40 H 0.053 0.947 41 H 0.054 0.946 42 H 0.376 0.624 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.233 3.178 4.406 13.386 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.169 4.169 3 C -0.090 4.090 4 C -0.184 4.184 5 C -0.158 4.158 6 C 0.122 3.878 7 N -0.344 5.344 8 C 0.025 3.975 9 C 0.043 3.957 10 C -0.539 4.539 11 H 0.079 0.921 12 C -0.124 4.124 13 N -0.497 5.497 14 Si 0.712 3.288 15 H -0.203 1.203 16 H -0.212 1.212 17 H -0.200 1.200 18 C -0.232 4.232 19 C -0.249 4.249 20 C -0.192 4.192 21 C -0.054 4.054 22 C 0.044 3.956 23 O -0.366 6.366 24 H 0.076 0.924 25 H 0.076 0.924 26 H 0.074 0.926 27 H 0.130 0.870 28 H 0.079 0.921 29 H 0.077 0.923 30 H 0.078 0.922 31 H 0.231 0.769 32 H 0.041 0.959 33 H 0.129 0.871 34 H 0.076 0.924 35 H 0.083 0.917 36 H 0.098 0.902 37 H 0.093 0.907 38 H 0.086 0.914 39 H 0.153 0.847 40 H 0.071 0.929 41 H 0.072 0.928 42 H 0.222 0.778 Dipole moment (debyes) X Y Z Total from point charges -11.809 3.328 4.329 13.010 hybrid contribution -0.026 0.111 -0.934 0.941 sum -11.835 3.439 3.395 12.784 Atomic orbital electron populations 1.20583 0.92296 1.01660 1.01065 1.19089 0.94928 0.92275 1.10582 1.20390 0.92611 0.96523 0.99469 1.19298 0.93701 0.93631 1.11766 1.20526 0.99540 0.94083 1.01605 1.17807 0.84602 0.92912 0.92464 1.45009 1.01486 1.10363 1.77557 1.21231 0.90857 0.85425 1.00015 1.19094 0.89427 0.97106 0.90109 1.20367 1.20213 1.23834 0.89480 0.92055 1.24913 0.94455 0.94024 0.99056 1.69886 1.38248 1.09428 1.32137 0.86770 0.78293 0.79378 0.84339 1.20263 1.21215 1.20004 1.22936 1.02586 0.92900 1.04820 1.22869 1.04304 0.94336 1.03370 1.20511 0.93325 0.97293 1.08113 1.19163 0.93529 0.92562 1.00111 1.20856 0.90284 0.85201 0.99252 1.86606 1.35846 1.16495 1.97670 0.92444 0.92424 0.92588 0.86982 0.92075 0.92321 0.92201 0.76907 0.95891 0.87059 0.92446 0.91674 0.90211 0.90656 0.91417 0.84735 0.92935 0.92840 0.77811 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.14 9.59 36.00 0.35 -0.79 16 2 C -0.17 -2.56 5.88 -104.59 -0.62 -3.18 16 3 C -0.07 -1.12 9.32 -39.61 -0.37 -1.49 16 4 C -0.18 -3.12 5.90 -104.42 -0.62 -3.74 16 5 C -0.10 -1.49 9.36 36.00 0.34 -1.16 16 6 C 0.23 4.64 6.63 -83.78 -0.56 4.08 16 7 N -0.72 -15.28 5.58 -58.63 -0.33 -15.60 16 8 C 0.15 3.48 4.69 -4.04 -0.02 3.46 16 9 C 0.04 1.05 1.72 -155.66 -0.27 0.79 16 10 C -0.50 -13.38 8.97 -34.44 -0.31 -13.69 16 11 H 0.06 1.64 7.92 -52.49 -0.42 1.22 16 12 C 0.08 2.16 5.02 -17.82 -0.09 2.07 16 13 N -0.86 -23.80 11.21 55.43 0.62 -23.18 16 14 Si 0.88 20.99 29.60 -169.99 -5.03 15.96 16 15 H -0.28 -6.49 7.11 56.52 0.40 -6.08 16 16 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 17 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 18 C -0.19 -4.40 9.88 -26.73 -0.26 -4.66 16 19 C -0.21 -4.51 9.93 -26.73 -0.27 -4.78 16 20 C -0.17 -3.43 8.63 -39.39 -0.34 -3.77 16 21 C -0.05 -0.90 5.88 -104.65 -0.62 -1.52 16 22 C 0.12 1.67 6.15 36.01 0.22 1.89 16 23 O -0.56 -8.38 12.14 -35.23 -0.43 -8.81 16 24 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 25 H 0.06 0.59 8.08 -51.93 -0.42 0.17 16 26 H 0.06 0.58 6.63 -51.93 -0.34 0.23 16 27 H 0.11 1.46 8.06 -52.49 -0.42 1.04 16 28 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 29 H 0.06 0.73 8.05 -51.93 -0.42 0.31 16 30 H 0.06 0.89 6.98 -51.93 -0.36 0.53 16 31 H 0.40 8.11 6.71 -40.82 -0.27 7.84 16 32 H 0.02 0.53 7.96 -51.93 -0.41 0.12 16 33 H 0.11 2.95 4.90 -51.93 -0.25 2.70 16 34 H 0.27 7.07 8.32 -40.82 -0.34 6.73 16 35 H 0.06 1.40 8.10 -51.93 -0.42 0.98 16 36 H 0.08 1.83 8.14 -51.93 -0.42 1.41 16 37 H 0.07 1.57 8.14 -51.93 -0.42 1.15 16 38 H 0.07 1.35 8.14 -51.93 -0.42 0.93 16 39 H 0.13 3.00 5.60 -52.49 -0.29 2.71 16 40 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 41 H 0.05 0.65 7.49 -51.93 -0.39 0.26 16 42 H 0.38 3.49 9.12 45.56 0.42 3.91 16 LS Contribution 340.14 15.07 5.13 5.13 Total: -1.00 -29.38 340.14 -9.14 -38.52 By element: Atomic # 1 Polarization: 20.14 SS G_CDS: -5.68 Total: 14.45 kcal Atomic # 6 Polarization: -23.05 SS G_CDS: -3.42 Total: -26.47 kcal Atomic # 7 Polarization: -39.07 SS G_CDS: 0.29 Total: -38.78 kcal Atomic # 8 Polarization: -8.38 SS G_CDS: -0.43 Total: -8.81 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -5.03 Total: 15.96 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -29.38 -9.14 -38.52 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594707450.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.922 kcal (2) G-P(sol) polarization free energy of solvation -29.379 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.456 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.143 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.522 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.599 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds