Wall clock time and date at job start Mon Mar 30 2020 02:51:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38310 * 119.92512 * 2 1 4 4 C 1.38080 * 120.07444 * 179.71820 * 3 2 1 5 5 C 1.50698 * 120.03830 * 180.27326 * 4 3 2 6 6 C 1.38936 * 119.92288 * 0.48449 * 4 3 2 7 7 N 1.39679 * 120.07517 * 179.78867 * 6 4 3 8 8 C 1.46494 * 120.00110 * 173.66460 * 7 6 4 9 9 C 1.53002 * 109.47197 * 176.85980 * 8 7 6 10 10 C 1.50698 * 115.54795 * 281.32427 * 9 8 7 11 11 H 1.08000 * 120.00213 * 144.08259 * 10 9 8 12 12 C 1.37880 * 119.99990 * 324.07396 * 10 9 8 13 13 N 1.31516 * 119.99720 * 337.05290 * 12 10 9 14 14 Si 1.86795 * 120.00113 * 157.06157 * 12 10 9 15 15 H 1.48502 * 109.47532 * 59.99397 * 14 12 10 16 16 H 1.48503 * 109.47510 * 179.97438 * 14 12 10 17 17 H 1.48503 * 109.46794 * 299.99790 * 14 12 10 18 18 C 1.52994 * 117.50092 * 135.61287 * 9 8 7 19 19 C 1.53001 * 117.49706 * 66.98727 * 9 8 7 20 20 C 1.38887 * 119.84858 * 359.51748 * 6 4 3 21 21 C 1.38116 * 119.92924 * 0.24890 * 20 6 4 22 22 C 1.50710 * 119.96528 * 180.02562 * 21 20 6 23 23 O 1.42898 * 109.46638 * 0.02562 * 22 21 20 24 24 H 1.08997 * 109.47558 * 270.02431 * 1 2 3 25 25 H 1.09003 * 109.47221 * 30.02741 * 1 2 3 26 26 H 1.09000 * 109.47129 * 150.02331 * 1 2 3 27 27 H 1.07998 * 119.96218 * 359.97438 * 3 2 1 28 28 H 1.08993 * 109.47257 * 264.11528 * 5 4 3 29 29 H 1.08999 * 109.47002 * 24.11895 * 5 4 3 30 30 H 1.09005 * 109.47126 * 144.11377 * 5 4 3 31 31 H 0.97005 * 119.99378 * 353.66757 * 7 6 4 32 32 H 1.09005 * 109.47040 * 296.85694 * 8 7 6 33 33 H 1.09001 * 109.47341 * 56.85877 * 8 7 6 34 34 H 0.97001 * 119.99499 * 185.15355 * 13 12 10 35 35 H 1.09007 * 117.49813 * 359.97438 * 18 9 8 36 36 H 1.08999 * 117.50371 * 145.02481 * 18 9 8 37 37 H 1.09002 * 117.49975 * 214.98214 * 19 9 8 38 38 H 1.08997 * 117.50009 * 359.97438 * 19 9 8 39 39 H 1.08002 * 120.03288 * 180.22861 * 20 6 4 40 40 H 1.08996 * 109.46872 * 119.99929 * 22 21 20 41 41 H 1.09000 * 109.46386 * 240.00171 * 22 21 20 42 42 H 0.96706 * 113.99691 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1970 1.1987 0.0000 4 6 3.5777 1.2023 0.0059 5 6 4.3287 2.5088 0.0121 6 6 4.2740 0.0000 0.0016 7 7 5.6708 -0.0001 0.0031 8 6 6.4031 -1.2616 0.1386 9 6 7.9056 -0.9931 0.0320 10 6 8.4331 -0.7963 -1.3658 11 1 9.2264 -0.0866 -1.5488 12 6 7.9031 -1.5224 -2.4113 13 7 7.2949 -2.6647 -2.1767 14 14 8.0491 -0.8839 -4.1606 15 1 9.4835 -0.7377 -4.5162 16 1 7.4037 -1.8427 -5.0931 17 1 7.3766 0.4361 -4.2634 18 6 8.8209 -1.6885 1.0416 19 6 8.5602 -0.1851 1.1543 20 6 3.5779 -1.2019 0.0016 21 6 2.1968 -1.1983 0.0006 22 6 1.4406 -2.5020 0.0012 23 8 2.3672 -3.5899 0.0033 24 1 -0.3634 0.0004 1.0276 25 1 -0.3634 0.8898 -0.5143 26 1 -0.3633 -0.8902 -0.5135 27 1 1.6551 2.1329 -0.0004 28 1 4.6054 2.7737 -1.0083 29 1 3.6947 3.2903 0.4312 30 1 5.2291 2.4076 0.6181 31 1 6.1558 0.8353 -0.0856 32 1 6.1816 -1.7079 1.1081 33 1 6.0990 -1.9452 -0.6541 34 1 6.9882 -3.2117 -2.9168 35 1 8.3526 -2.3371 1.7821 36 1 9.8049 -2.0041 0.6949 37 1 9.3727 0.4885 0.8817 38 1 7.9203 0.1556 1.9684 39 1 4.1161 -2.1382 0.0020 40 1 0.8133 -2.5577 0.8907 41 1 0.8146 -2.5591 -0.8893 42 1 1.9496 -4.4621 0.0034 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594707450.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:51:04 Heat of formation + Delta-G solvation = -27.404676 kcal Electronic energy + Delta-G solvation = -21624.935436 eV Core-core repulsion = 18569.273311 eV Total energy + Delta-G solvation = -3055.662125 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.79449 -38.87360 -37.71141 -35.95952 -34.26752 -33.70322 -31.82993 -29.24986 -28.20473 -27.40256 -26.32834 -24.69603 -22.99630 -22.60664 -21.02764 -20.66099 -18.57483 -18.22830 -17.50961 -16.73770 -16.51665 -15.99213 -15.72894 -15.52507 -15.23055 -14.82799 -14.68801 -14.50521 -14.14993 -13.94430 -13.78867 -13.48883 -13.24128 -12.94231 -12.84521 -12.78167 -12.71174 -12.42126 -12.28882 -12.12925 -11.84340 -11.57313 -11.30525 -11.22402 -11.11187 -10.65137 -10.45216 -9.99532 -9.36065 -8.21874 -7.91541 -6.17332 0.57552 0.83144 1.35235 1.41014 1.46128 2.36388 2.72187 2.97091 3.00910 3.44732 3.63833 3.98931 4.09224 4.21319 4.26801 4.35301 4.45777 4.49815 4.56853 4.62284 4.69160 4.72177 4.80730 4.84404 4.89278 4.91336 4.99205 5.06539 5.10299 5.14983 5.20941 5.26130 5.42098 5.51204 5.56282 5.63370 5.74056 5.90001 5.94455 6.21055 6.35940 6.67233 6.76496 6.98862 7.15218 7.39795 8.84263 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.015380 B = 0.005856 C = 0.005602 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1820.065280 B = 4780.202238 C = 4996.987126 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.098 4.098 2 C -0.158 4.158 3 C -0.074 4.074 4 C -0.184 4.184 5 C -0.098 4.098 6 C 0.197 3.803 7 N -0.727 5.727 8 C 0.169 3.831 9 C 0.014 3.986 10 C -0.515 4.515 11 H 0.055 0.945 12 C 0.040 3.960 13 N -0.887 5.887 14 Si 0.939 3.061 15 H -0.269 1.269 16 H -0.287 1.287 17 H -0.275 1.275 18 C -0.197 4.197 19 C -0.182 4.182 20 C -0.199 4.199 21 C -0.068 4.068 22 C 0.120 3.880 23 O -0.593 6.593 24 H 0.075 0.925 25 H 0.074 0.926 26 H 0.068 0.932 27 H 0.147 0.853 28 H 0.059 0.941 29 H 0.087 0.913 30 H 0.053 0.947 31 H 0.396 0.604 32 H 0.013 0.987 33 H 0.078 0.922 34 H 0.263 0.737 35 H 0.073 0.927 36 H 0.073 0.927 37 H 0.083 0.917 38 H 0.084 0.916 39 H 0.100 0.900 40 H 0.080 0.920 41 H 0.075 0.925 42 H 0.397 0.603 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.493 4.943 4.606 15.991 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.160 4.160 3 C -0.092 4.092 4 C -0.189 4.189 5 C -0.155 4.155 6 C 0.092 3.908 7 N -0.354 5.354 8 C 0.044 3.956 9 C 0.013 3.987 10 C -0.552 4.552 11 H 0.073 0.927 12 C -0.163 4.163 13 N -0.523 5.523 14 Si 0.765 3.235 15 H -0.194 1.194 16 H -0.213 1.213 17 H -0.200 1.200 18 C -0.236 4.236 19 C -0.220 4.220 20 C -0.222 4.222 21 C -0.069 4.069 22 C 0.044 3.956 23 O -0.402 6.402 24 H 0.093 0.907 25 H 0.093 0.907 26 H 0.087 0.913 27 H 0.165 0.835 28 H 0.078 0.922 29 H 0.106 0.894 30 H 0.072 0.928 31 H 0.232 0.768 32 H 0.031 0.969 33 H 0.095 0.905 34 H 0.072 0.928 35 H 0.091 0.909 36 H 0.091 0.909 37 H 0.101 0.899 38 H 0.103 0.897 39 H 0.118 0.882 40 H 0.098 0.902 41 H 0.093 0.907 42 H 0.247 0.753 Dipole moment (debyes) X Y Z Total from point charges -14.098 5.092 4.534 15.660 hybrid contribution 0.563 -0.449 -0.952 1.194 sum -13.535 4.643 3.582 14.751 Atomic orbital electron populations 1.20670 0.88882 1.03244 1.02648 1.19630 0.97355 0.91361 1.07645 1.20868 0.92013 0.98225 0.98140 1.19672 0.94809 0.93578 1.10804 1.20555 0.99673 0.93587 1.01677 1.18111 0.84131 0.94139 0.94454 1.44762 1.02052 1.09184 1.79356 1.20734 0.90730 0.86063 0.98033 1.19172 0.89912 0.99557 0.90034 1.20585 1.20207 1.23423 0.90976 0.92665 1.25527 0.94488 0.94070 1.02206 1.70010 1.39296 1.10323 1.32699 0.85912 0.78497 0.78537 0.80586 1.19374 1.21272 1.20027 1.22924 1.01863 0.94307 1.04477 1.22837 1.03686 0.93416 1.02020 1.20451 0.94965 0.96106 1.10707 1.19656 0.92617 0.95204 0.99413 1.21009 0.89806 0.83431 1.01387 1.86574 1.37554 1.18206 1.97820 0.90680 0.90686 0.91281 0.83538 0.92189 0.89380 0.92764 0.76842 0.96930 0.90453 0.92783 0.90876 0.90862 0.89880 0.89728 0.88237 0.90227 0.90739 0.75344 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.81 9.59 71.24 0.68 -1.12 16 2 C -0.16 -4.43 5.88 -19.84 -0.12 -4.55 16 3 C -0.07 -2.11 9.32 22.25 0.21 -1.91 16 4 C -0.18 -6.22 5.90 -19.74 -0.12 -6.34 16 5 C -0.10 -2.74 9.36 71.24 0.67 -2.08 16 6 C 0.20 8.13 6.63 38.21 0.25 8.39 16 7 N -0.73 -31.97 5.58 -339.41 -1.89 -33.86 16 8 C 0.17 8.34 4.69 86.38 0.41 8.75 16 9 C 0.01 0.70 1.72 -52.93 -0.09 0.61 16 10 C -0.52 -28.02 8.97 25.60 0.23 -27.79 16 11 H 0.06 2.99 7.92 -2.91 -0.02 2.97 16 12 C 0.04 2.17 5.02 84.66 0.42 2.60 16 13 N -0.89 -50.93 11.21 21.45 0.24 -50.69 16 14 Si 0.94 43.84 29.60 68.60 2.03 45.88 16 15 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 16 H -0.29 -13.31 7.11 99.48 0.71 -12.60 16 17 H -0.27 -12.74 7.11 99.48 0.71 -12.03 16 18 C -0.20 -9.06 9.88 30.59 0.30 -8.76 16 19 C -0.18 -7.71 9.93 30.60 0.30 -7.40 16 20 C -0.20 -8.39 8.63 22.40 0.19 -8.19 16 21 C -0.07 -2.29 5.88 -19.88 -0.12 -2.41 16 22 C 0.12 3.13 6.15 71.24 0.44 3.57 16 23 O -0.59 -17.92 12.14 -148.98 -1.81 -19.73 16 24 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 25 H 0.07 1.16 8.08 -2.39 -0.02 1.15 16 26 H 0.07 1.12 6.63 -2.39 -0.02 1.10 16 27 H 0.15 3.13 8.06 -2.91 -0.02 3.11 16 28 H 0.06 1.68 8.14 -2.39 -0.02 1.66 16 29 H 0.09 1.90 8.05 -2.39 -0.02 1.88 16 30 H 0.05 1.56 6.98 -2.38 -0.02 1.55 16 31 H 0.40 16.67 6.71 -92.70 -0.62 16.05 16 32 H 0.01 0.62 7.96 -2.38 -0.02 0.60 16 33 H 0.08 4.38 4.90 -2.39 -0.01 4.37 16 34 H 0.26 14.56 8.32 -92.71 -0.77 13.79 16 35 H 0.07 3.19 8.10 -2.38 -0.02 3.17 16 36 H 0.07 3.41 8.14 -2.39 -0.02 3.39 16 37 H 0.08 3.37 8.14 -2.39 -0.02 3.35 16 38 H 0.08 3.28 8.14 -2.39 -0.02 3.26 16 39 H 0.10 4.82 5.60 -2.91 -0.02 4.80 16 40 H 0.08 1.63 8.14 -2.39 -0.02 1.61 16 41 H 0.07 1.61 7.49 -2.39 -0.02 1.59 16 42 H 0.40 7.28 9.12 -74.05 -0.68 6.61 16 Total: -1.00 -65.85 340.14 1.97 -63.88 By element: Atomic # 1 Polarization: 41.43 SS G_CDS: -0.27 Total: 41.17 kcal Atomic # 6 Polarization: -50.30 SS G_CDS: 3.67 Total: -46.63 kcal Atomic # 7 Polarization: -82.90 SS G_CDS: -1.65 Total: -84.56 kcal Atomic # 8 Polarization: -17.92 SS G_CDS: -1.81 Total: -19.73 kcal Atomic # 14 Polarization: 43.84 SS G_CDS: 2.03 Total: 45.88 kcal Total: -65.85 1.97 -63.88 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594707450.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.471 kcal (2) G-P(sol) polarization free energy of solvation -65.847 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.376 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.972 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.875 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.405 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds