Wall clock time and date at job start Mon Mar 30 2020 01:42:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38260 * 120.06723 * 2 1 4 4 C 1.38032 * 119.83108 * 180.10623 * 3 2 1 5 5 C 1.38681 * 120.34605 * 0.03405 * 4 3 2 6 6 C 1.37835 * 119.84946 * 359.81904 * 5 4 3 7 7 C 1.38013 * 120.06618 * 180.02562 * 2 1 3 8 8 C 1.50629 * 121.84427 * 180.25812 * 6 5 4 9 9 N 1.46633 * 110.49616 * 342.42911 * 8 6 5 10 10 C 1.46897 * 111.00112 * 175.95004 * 9 8 6 11 11 C 1.53006 * 109.47346 * 66.04025 * 10 9 8 12 12 O 1.42906 * 109.46752 * 65.00065 * 11 10 9 13 13 C 1.42898 * 113.99824 * 180.02562 * 12 11 10 14 14 C 1.50694 * 109.47357 * 180.02562 * 13 12 11 15 15 H 1.08004 * 119.99787 * 359.97438 * 14 13 12 16 16 C 1.37871 * 120.00358 * 179.97438 * 14 13 12 17 17 N 1.31518 * 120.00101 * 359.97438 * 16 14 13 18 18 Si 1.86805 * 120.00155 * 179.97438 * 16 14 13 19 19 H 1.48499 * 109.47046 * 90.00407 * 18 16 14 20 20 H 1.48497 * 109.47024 * 209.99877 * 18 16 14 21 21 H 1.48492 * 109.47198 * 330.00388 * 18 16 14 22 22 C 1.47158 * 110.25927 * 52.51846 * 9 8 6 23 23 C 1.50717 * 118.48694 * 179.56685 * 5 4 3 24 24 H 1.09002 * 109.46621 * 269.97425 * 1 2 3 25 25 H 1.09003 * 109.47365 * 29.97505 * 1 2 3 26 26 H 1.08998 * 109.47225 * 149.97912 * 1 2 3 27 27 H 1.07999 * 120.08615 * 0.08204 * 3 2 1 28 28 H 1.07994 * 119.83015 * 179.97438 * 4 3 2 29 29 H 1.08003 * 119.80961 * 359.94371 * 7 2 1 30 30 H 1.09003 * 109.27003 * 222.16105 * 8 6 5 31 31 H 1.08997 * 109.26675 * 102.68730 * 8 6 5 32 32 H 1.09004 * 109.46772 * 306.04767 * 10 9 8 33 33 H 1.08992 * 109.47408 * 186.04244 * 10 9 8 34 34 H 1.08993 * 109.46955 * 185.00483 * 11 10 9 35 35 H 1.09000 * 109.47050 * 305.00312 * 11 10 9 36 36 H 1.09008 * 109.46688 * 300.00244 * 13 12 11 37 37 H 1.09002 * 109.47367 * 59.99723 * 13 12 11 38 38 H 0.96999 * 119.99956 * 179.97438 * 17 16 14 39 39 H 1.09004 * 109.62756 * 48.45790 * 22 9 8 40 40 H 1.09001 * 109.62580 * 169.04003 * 22 9 8 41 41 H 1.09003 * 109.38671 * 283.45006 * 23 5 4 42 42 H 1.08991 * 109.39354 * 43.14951 * 23 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1997 1.1966 0.0000 4 6 3.5800 1.1909 -0.0022 5 6 4.2757 -0.0088 -0.0052 6 6 3.5857 -1.2020 -0.0021 7 6 2.1984 -1.1944 -0.0005 8 6 4.2955 -2.5306 0.0007 9 7 5.6922 -2.3673 -0.4150 10 6 6.4206 -3.6397 -0.3243 11 6 5.8504 -4.6277 -1.3440 12 8 6.0978 -4.1439 -2.6657 13 6 5.6020 -4.9971 -3.6992 14 6 5.9168 -4.3932 -5.0434 15 1 6.4426 -3.4516 -5.1026 16 6 5.5338 -5.0425 -6.1978 17 7 4.8939 -6.1893 -6.1258 18 14 5.9235 -4.2935 -7.8641 19 1 7.2486 -4.7781 -8.3270 20 1 4.8807 -4.6936 -8.8427 21 1 5.9509 -2.8134 -7.7473 22 6 6.3462 -1.3263 0.3939 23 6 5.7822 0.0339 -0.0175 24 1 -0.3633 -0.0005 1.0277 25 1 -0.3634 0.8902 -0.5134 26 1 -0.3633 -0.8898 -0.5141 27 1 1.6622 2.1333 0.0013 28 1 4.1210 2.1255 -0.0026 29 1 1.6564 -2.1286 0.0000 30 1 3.7920 -3.2089 -0.6882 31 1 4.2661 -2.9519 1.0055 32 1 6.3113 -4.0502 0.6796 33 1 7.4765 -3.4697 -0.5343 34 1 6.3297 -5.5983 -1.2167 35 1 4.7763 -4.7298 -1.1895 36 1 6.0758 -5.9757 -3.6209 37 1 4.5226 -5.1066 -3.5935 38 1 4.6241 -6.6460 -6.9379 39 1 6.1437 -1.5024 1.4504 40 1 7.4214 -1.3460 0.2160 41 1 6.1289 0.2809 -1.0210 42 1 6.1284 0.7955 0.6811 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595658377.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:42:41 Heat of formation + Delta-G solvation = -29.241447 kcal Electronic energy + Delta-G solvation = -20970.891256 eV Core-core repulsion = 17915.149483 eV Total energy + Delta-G solvation = -3055.741773 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.12105 -37.75089 -36.22418 -33.64655 -32.61149 -31.90275 -30.76724 -28.50315 -26.89482 -26.66799 -24.58491 -22.52437 -22.21925 -22.00597 -21.14096 -19.10501 -16.48081 -16.35147 -15.90964 -15.57466 -15.34540 -14.92990 -14.51376 -14.36097 -14.22671 -13.77281 -13.72870 -13.21866 -13.02321 -12.88074 -12.55391 -12.40060 -12.10155 -12.00170 -11.79726 -11.46448 -11.17506 -11.14060 -10.82133 -10.78671 -10.71034 -10.45176 -10.29522 -9.91632 -9.02456 -8.74574 -8.73093 -8.32023 -8.10281 -8.01765 -6.04693 -4.05266 1.40955 1.43548 3.34700 3.39371 3.45882 3.74640 3.99340 4.40860 4.69296 4.72880 4.89560 4.90920 5.00473 5.09428 5.28108 5.31930 5.36806 5.42991 5.43787 5.49258 5.51270 5.55540 5.65341 5.68506 5.78487 5.82463 5.89686 6.00781 6.07819 6.10338 6.12968 6.25973 6.32191 6.50185 6.60479 6.69522 7.06549 7.16558 7.22023 7.30329 7.50358 7.87449 8.23737 8.68820 9.09578 9.59414 11.07083 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.015724 B = 0.004251 C = 0.003830 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1780.308234 B = 6585.486363 C = 7308.407345 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.093 4.093 3 C -0.125 4.125 4 C -0.119 4.119 5 C -0.071 4.071 6 C -0.065 4.065 7 C -0.115 4.115 8 C 0.091 3.909 9 N -0.517 5.517 10 C 0.061 3.939 11 C 0.066 3.934 12 O -0.379 6.379 13 C 0.194 3.806 14 C -0.509 4.509 15 H 0.066 0.934 16 C 0.055 3.945 17 N -0.901 5.901 18 Si 0.906 3.094 19 H -0.279 1.279 20 H -0.286 1.286 21 H -0.271 1.271 22 C 0.053 3.947 23 C -0.075 4.075 24 H 0.066 0.934 25 H 0.064 0.936 26 H 0.066 0.934 27 H 0.118 0.882 28 H 0.119 0.881 29 H 0.120 0.880 30 H 0.093 0.907 31 H 0.042 0.958 32 H 0.039 0.961 33 H 0.084 0.916 34 H 0.039 0.961 35 H 0.035 0.965 36 H 0.002 0.998 37 H 0.002 0.998 38 H 0.263 0.737 39 H 0.033 0.967 40 H 0.080 0.920 41 H 0.086 0.914 42 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.888 11.724 17.061 21.063 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.093 4.093 3 C -0.143 4.143 4 C -0.137 4.137 5 C -0.071 4.071 6 C -0.066 4.066 7 C -0.134 4.134 8 C -0.036 4.036 9 N -0.241 5.241 10 C -0.067 4.067 11 C -0.013 4.013 12 O -0.298 6.298 13 C 0.120 3.880 14 C -0.547 4.547 15 H 0.085 0.915 16 C -0.145 4.145 17 N -0.541 5.541 18 Si 0.734 3.266 19 H -0.205 1.205 20 H -0.211 1.211 21 H -0.196 1.196 22 C -0.075 4.075 23 C -0.113 4.113 24 H 0.085 0.915 25 H 0.083 0.917 26 H 0.085 0.915 27 H 0.136 0.864 28 H 0.137 0.863 29 H 0.138 0.862 30 H 0.111 0.889 31 H 0.060 0.940 32 H 0.057 0.943 33 H 0.102 0.898 34 H 0.058 0.942 35 H 0.053 0.947 36 H 0.020 0.980 37 H 0.020 0.980 38 H 0.072 0.928 39 H 0.051 0.949 40 H 0.098 0.902 41 H 0.105 0.895 42 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -3.858 11.898 16.400 20.625 hybrid contribution -0.105 -0.319 -0.112 0.354 sum -3.963 11.578 16.287 20.372 Atomic orbital electron populations 1.20758 0.91365 1.02775 1.01953 1.19769 0.95884 0.93120 1.00500 1.20901 0.94132 0.97314 1.01911 1.21034 0.94165 0.97322 1.01158 1.19557 0.95693 0.92310 0.99576 1.19572 0.93308 0.94387 0.99294 1.20912 0.93302 0.97750 1.01409 1.21019 0.89486 0.94272 0.98833 1.62144 1.01092 1.07129 1.53768 1.22196 0.99130 0.89071 0.96286 1.22254 0.98099 0.94785 0.86123 1.87956 1.80489 1.49197 1.12201 1.20171 0.93220 0.89434 0.85196 1.21066 1.36847 1.07448 0.89369 0.91539 1.24937 0.95158 0.94964 0.99472 1.69968 1.39680 1.15706 1.28711 0.86359 0.77940 0.79619 0.82727 1.20516 1.21144 1.19604 1.22138 0.99019 0.91817 0.94532 1.20533 0.91050 0.96904 1.02782 0.91508 0.91711 0.91506 0.86411 0.86302 0.86158 0.88867 0.94046 0.94298 0.89804 0.94246 0.94682 0.98040 0.97974 0.92778 0.94925 0.90182 0.89519 0.90809 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.03 10.02 36.00 0.36 -0.67 16 2 C -0.09 -1.12 5.87 -104.70 -0.62 -1.73 16 3 C -0.12 -1.45 9.71 -39.65 -0.38 -1.83 16 4 C -0.12 -1.44 9.66 -39.49 -0.38 -1.82 16 5 C -0.07 -0.97 5.77 -104.60 -0.60 -1.58 16 6 C -0.07 -0.95 5.79 -104.62 -0.61 -1.55 16 7 C -0.12 -1.54 9.31 -39.48 -0.37 -1.91 16 8 C 0.09 1.35 4.90 -5.16 -0.03 1.32 16 9 N -0.52 -8.15 4.63 -236.19 -1.09 -9.24 16 10 C 0.06 0.93 5.33 -3.82 -0.02 0.91 16 11 C 0.07 1.24 5.99 37.16 0.22 1.46 16 12 O -0.38 -9.46 10.27 -35.23 -0.36 -9.82 16 13 C 0.19 5.49 5.69 36.00 0.20 5.69 16 14 C -0.51 -15.44 9.43 -34.45 -0.32 -15.77 16 15 H 0.07 2.02 7.81 -52.48 -0.41 1.61 16 16 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 17 N -0.90 -27.51 13.29 55.43 0.74 -26.77 16 18 Si 0.91 22.40 29.54 -169.99 -5.02 17.37 16 19 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 20 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 21 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 22 C 0.05 0.67 5.57 -3.74 -0.02 0.65 16 23 C -0.08 -0.92 5.94 -27.93 -0.17 -1.09 16 24 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 25 H 0.06 0.53 8.09 -51.93 -0.42 0.11 16 26 H 0.07 0.60 8.09 -51.93 -0.42 0.18 16 27 H 0.12 1.09 8.06 -52.49 -0.42 0.67 16 28 H 0.12 1.17 8.06 -52.49 -0.42 0.75 16 29 H 0.12 1.44 8.06 -52.48 -0.42 1.01 16 30 H 0.09 1.51 6.52 -51.93 -0.34 1.17 16 31 H 0.04 0.54 8.08 -51.93 -0.42 0.12 16 32 H 0.04 0.49 8.07 -51.93 -0.42 0.07 16 33 H 0.08 1.26 7.91 -51.93 -0.41 0.85 16 34 H 0.04 0.71 8.14 -51.93 -0.42 0.28 16 35 H 0.04 0.65 6.41 -51.93 -0.33 0.32 16 36 H 0.00 0.05 8.14 -51.92 -0.42 -0.37 16 37 H 0.00 0.07 8.14 -51.93 -0.42 -0.35 16 38 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 39 H 0.03 0.38 8.05 -51.93 -0.42 -0.04 16 40 H 0.08 0.93 7.87 -51.93 -0.41 0.52 16 41 H 0.09 1.15 8.14 -51.93 -0.42 0.73 16 42 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 LS Contribution 341.72 15.07 5.15 5.15 Total: -1.00 -33.20 341.72 -10.35 -43.56 By element: Atomic # 1 Polarization: 3.08 SS G_CDS: -6.94 Total: -3.86 kcal Atomic # 6 Polarization: -13.55 SS G_CDS: -2.83 Total: -16.38 kcal Atomic # 7 Polarization: -35.66 SS G_CDS: -0.36 Total: -36.02 kcal Atomic # 8 Polarization: -9.46 SS G_CDS: -0.36 Total: -9.82 kcal Atomic # 14 Polarization: 22.40 SS G_CDS: -5.02 Total: 17.37 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -33.20 -10.35 -43.56 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595658377.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.314 kcal (2) G-P(sol) polarization free energy of solvation -33.202 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.888 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.354 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.556 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.241 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds