Wall clock time and date at job start Mon Mar 30 2020 01:42:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38260 * 120.06723 * 2 1 4 4 C 1.38032 * 119.83108 * 180.10623 * 3 2 1 5 5 C 1.38681 * 120.34605 * 0.03405 * 4 3 2 6 6 C 1.37835 * 119.84946 * 359.81904 * 5 4 3 7 7 C 1.38013 * 120.06618 * 180.02562 * 2 1 3 8 8 C 1.50629 * 121.84427 * 180.25812 * 6 5 4 9 9 N 1.46633 * 110.49616 * 342.42911 * 8 6 5 10 10 C 1.46897 * 111.00112 * 175.95004 * 9 8 6 11 11 C 1.53006 * 109.47346 * 66.04025 * 10 9 8 12 12 O 1.42906 * 109.46752 * 65.00065 * 11 10 9 13 13 C 1.42898 * 113.99824 * 180.02562 * 12 11 10 14 14 C 1.50694 * 109.47357 * 180.02562 * 13 12 11 15 15 H 1.08004 * 119.99787 * 359.97438 * 14 13 12 16 16 C 1.37871 * 120.00358 * 179.97438 * 14 13 12 17 17 N 1.31518 * 120.00101 * 359.97438 * 16 14 13 18 18 Si 1.86805 * 120.00155 * 179.97438 * 16 14 13 19 19 H 1.48499 * 109.47046 * 90.00407 * 18 16 14 20 20 H 1.48497 * 109.47024 * 209.99877 * 18 16 14 21 21 H 1.48492 * 109.47198 * 330.00388 * 18 16 14 22 22 C 1.47158 * 110.25927 * 52.51846 * 9 8 6 23 23 C 1.50717 * 118.48694 * 179.56685 * 5 4 3 24 24 H 1.09002 * 109.46621 * 269.97425 * 1 2 3 25 25 H 1.09003 * 109.47365 * 29.97505 * 1 2 3 26 26 H 1.08998 * 109.47225 * 149.97912 * 1 2 3 27 27 H 1.07999 * 120.08615 * 0.08204 * 3 2 1 28 28 H 1.07994 * 119.83015 * 179.97438 * 4 3 2 29 29 H 1.08003 * 119.80961 * 359.94371 * 7 2 1 30 30 H 1.09003 * 109.27003 * 222.16105 * 8 6 5 31 31 H 1.08997 * 109.26675 * 102.68730 * 8 6 5 32 32 H 1.09004 * 109.46772 * 306.04767 * 10 9 8 33 33 H 1.08992 * 109.47408 * 186.04244 * 10 9 8 34 34 H 1.08993 * 109.46955 * 185.00483 * 11 10 9 35 35 H 1.09000 * 109.47050 * 305.00312 * 11 10 9 36 36 H 1.09008 * 109.46688 * 300.00244 * 13 12 11 37 37 H 1.09002 * 109.47367 * 59.99723 * 13 12 11 38 38 H 0.96999 * 119.99956 * 179.97438 * 17 16 14 39 39 H 1.09004 * 109.62756 * 48.45790 * 22 9 8 40 40 H 1.09001 * 109.62580 * 169.04003 * 22 9 8 41 41 H 1.09003 * 109.38671 * 283.45006 * 23 5 4 42 42 H 1.08991 * 109.39354 * 43.14951 * 23 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1997 1.1966 0.0000 4 6 3.5800 1.1909 -0.0022 5 6 4.2757 -0.0088 -0.0052 6 6 3.5857 -1.2020 -0.0021 7 6 2.1984 -1.1944 -0.0005 8 6 4.2955 -2.5306 0.0007 9 7 5.6922 -2.3673 -0.4150 10 6 6.4206 -3.6397 -0.3243 11 6 5.8504 -4.6277 -1.3440 12 8 6.0978 -4.1439 -2.6657 13 6 5.6020 -4.9971 -3.6992 14 6 5.9168 -4.3932 -5.0434 15 1 6.4426 -3.4516 -5.1026 16 6 5.5338 -5.0425 -6.1978 17 7 4.8939 -6.1893 -6.1258 18 14 5.9235 -4.2935 -7.8641 19 1 7.2486 -4.7781 -8.3270 20 1 4.8807 -4.6936 -8.8427 21 1 5.9509 -2.8134 -7.7473 22 6 6.3462 -1.3263 0.3939 23 6 5.7822 0.0339 -0.0175 24 1 -0.3633 -0.0005 1.0277 25 1 -0.3634 0.8902 -0.5134 26 1 -0.3633 -0.8898 -0.5141 27 1 1.6622 2.1333 0.0013 28 1 4.1210 2.1255 -0.0026 29 1 1.6564 -2.1286 0.0000 30 1 3.7920 -3.2089 -0.6882 31 1 4.2661 -2.9519 1.0055 32 1 6.3113 -4.0502 0.6796 33 1 7.4765 -3.4697 -0.5343 34 1 6.3297 -5.5983 -1.2167 35 1 4.7763 -4.7298 -1.1895 36 1 6.0758 -5.9757 -3.6209 37 1 4.5226 -5.1066 -3.5935 38 1 4.6241 -6.6460 -6.9379 39 1 6.1437 -1.5024 1.4504 40 1 7.4214 -1.3460 0.2160 41 1 6.1289 0.2809 -1.0210 42 1 6.1284 0.7955 0.6811 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595658377.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:42:40 Heat of formation + Delta-G solvation = -49.567942 kcal Electronic energy + Delta-G solvation = -20971.772679 eV Core-core repulsion = 17915.149483 eV Total energy + Delta-G solvation = -3056.623196 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.11578 -39.06450 -37.84891 -35.05097 -34.48192 -32.91868 -31.84072 -30.03040 -28.63396 -27.76771 -25.74255 -24.48029 -23.49315 -22.94698 -22.45905 -20.10688 -18.62224 -17.61077 -17.45928 -16.80606 -16.62481 -16.25582 -16.21345 -15.59535 -15.46620 -15.15795 -14.82108 -14.56866 -14.19336 -13.87129 -13.80952 -13.68133 -13.36471 -13.17561 -12.96810 -12.84963 -12.76105 -12.70207 -12.48259 -12.19247 -12.04550 -11.88111 -11.53439 -11.42466 -11.24421 -10.85181 -10.18149 -9.72778 -9.27382 -9.14603 -8.31917 -6.43812 0.45025 0.47178 1.38747 1.42031 1.54245 2.35036 2.77728 2.89493 3.01658 3.24309 3.71156 3.79072 4.02600 4.09931 4.13046 4.19512 4.24244 4.37110 4.42555 4.46903 4.51149 4.52719 4.62838 4.66901 4.72722 4.82346 4.83421 4.87978 4.92036 4.97551 4.99784 5.14995 5.18469 5.19470 5.35174 5.54492 5.55616 5.66827 5.72410 5.97557 6.10172 6.13572 6.21694 6.57107 6.86421 7.28465 8.80609 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.015724 B = 0.004251 C = 0.003830 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1780.308234 B = 6585.486363 C = 7308.407345 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.100 4.100 3 C -0.129 4.129 4 C -0.123 4.123 5 C -0.091 4.091 6 C -0.090 4.090 7 C -0.135 4.135 8 C 0.097 3.903 9 N -0.548 5.548 10 C 0.070 3.930 11 C 0.055 3.945 12 O -0.395 6.395 13 C 0.210 3.790 14 C -0.546 4.546 15 H 0.059 0.941 16 C 0.007 3.993 17 N -0.931 5.931 18 Si 0.982 3.018 19 H -0.265 1.265 20 H -0.273 1.273 21 H -0.267 1.267 22 C 0.054 3.946 23 C -0.073 4.073 24 H 0.081 0.919 25 H 0.077 0.923 26 H 0.064 0.936 27 H 0.144 0.856 28 H 0.142 0.858 29 H 0.122 0.878 30 H 0.066 0.934 31 H 0.057 0.943 32 H 0.073 0.927 33 H 0.087 0.913 34 H 0.050 0.950 35 H 0.034 0.966 36 H -0.015 1.015 37 H -0.021 1.021 38 H 0.271 0.729 39 H 0.047 0.953 40 H 0.090 0.910 41 H 0.071 0.929 42 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.743 13.486 17.361 22.300 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.100 4.100 3 C -0.146 4.146 4 C -0.141 4.141 5 C -0.091 4.091 6 C -0.091 4.091 7 C -0.153 4.153 8 C -0.031 4.031 9 N -0.272 5.272 10 C -0.058 4.058 11 C -0.022 4.022 12 O -0.315 6.315 13 C 0.135 3.865 14 C -0.583 4.583 15 H 0.077 0.923 16 C -0.191 4.191 17 N -0.571 5.571 18 Si 0.805 3.195 19 H -0.190 1.190 20 H -0.198 1.198 21 H -0.191 1.191 22 C -0.073 4.073 23 C -0.110 4.110 24 H 0.100 0.900 25 H 0.096 0.904 26 H 0.083 0.917 27 H 0.162 0.838 28 H 0.160 0.840 29 H 0.140 0.860 30 H 0.084 0.916 31 H 0.074 0.926 32 H 0.091 0.909 33 H 0.105 0.895 34 H 0.068 0.932 35 H 0.053 0.947 36 H 0.003 0.997 37 H -0.003 1.003 38 H 0.079 0.921 39 H 0.065 0.935 40 H 0.108 0.892 41 H 0.089 0.911 42 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -3.710 13.657 16.730 21.913 hybrid contribution -0.204 -0.876 -0.120 0.908 sum -3.914 12.781 16.610 21.321 Atomic orbital electron populations 1.20801 0.89450 1.03331 1.03081 1.20146 0.97442 0.92850 0.99581 1.21283 0.94268 0.98217 1.00883 1.21361 0.94679 0.97725 1.00312 1.19831 0.96584 0.92590 1.00094 1.19727 0.93945 0.94598 1.00799 1.21108 0.93291 0.98685 1.02266 1.20896 0.89060 0.94354 0.98768 1.62083 1.01705 1.07852 1.55591 1.22116 0.98772 0.88511 0.96372 1.22621 0.98714 0.96699 0.84171 1.87905 1.80348 1.49105 1.14101 1.19776 0.91558 0.89053 0.86139 1.21371 1.38217 1.07788 0.90953 0.92320 1.25948 0.94237 0.95202 1.03742 1.70072 1.39796 1.16816 1.30400 0.85203 0.78503 0.78760 0.77073 1.19009 1.19788 1.19125 1.22207 0.99273 0.90985 0.94845 1.20561 0.90302 0.97500 1.02660 0.90008 0.90388 0.91723 0.83798 0.83979 0.85976 0.91597 0.92553 0.90913 0.89499 0.93217 0.94745 0.99722 1.00311 0.92063 0.93463 0.89211 0.91083 0.87897 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.86 10.02 71.23 0.71 -1.15 16 2 C -0.10 -2.32 5.87 -19.91 -0.12 -2.44 16 3 C -0.13 -2.75 9.71 22.23 0.22 -2.54 16 4 C -0.12 -2.77 9.66 22.33 0.22 -2.56 16 5 C -0.09 -2.41 5.77 -19.85 -0.11 -2.52 16 6 C -0.09 -2.65 5.79 -19.86 -0.12 -2.76 16 7 C -0.14 -3.65 9.31 22.33 0.21 -3.44 16 8 C 0.10 2.91 4.90 85.59 0.42 3.33 16 9 N -0.55 -17.13 4.63 -901.18 -4.18 -21.31 16 10 C 0.07 2.08 5.33 86.31 0.46 2.54 16 11 C 0.06 2.14 5.99 71.98 0.43 2.57 16 12 O -0.40 -20.40 10.27 -148.98 -1.53 -21.93 16 13 C 0.21 12.37 5.69 71.23 0.41 12.78 16 14 C -0.55 -33.94 9.43 25.60 0.24 -33.70 16 15 H 0.06 3.65 7.81 -2.91 -0.02 3.62 16 16 C 0.01 0.41 5.46 84.65 0.46 0.88 16 17 N -0.93 -57.48 13.29 21.45 0.28 -57.20 16 18 Si 0.98 45.80 29.54 68.60 2.03 47.83 16 19 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 20 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 21 H -0.27 -12.17 7.11 99.48 0.71 -11.47 16 22 C 0.05 1.29 5.57 86.22 0.48 1.77 16 23 C -0.07 -1.69 5.94 29.82 0.18 -1.51 16 24 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 25 H 0.08 1.11 8.09 -2.39 -0.02 1.09 16 26 H 0.06 1.11 8.09 -2.39 -0.02 1.09 16 27 H 0.14 2.24 8.06 -2.91 -0.02 2.22 16 28 H 0.14 2.43 8.06 -2.91 -0.02 2.41 16 29 H 0.12 3.06 8.06 -2.91 -0.02 3.04 16 30 H 0.07 2.27 6.52 -2.39 -0.02 2.26 16 31 H 0.06 1.46 8.08 -2.39 -0.02 1.44 16 32 H 0.07 1.69 8.07 -2.39 -0.02 1.67 16 33 H 0.09 2.53 7.91 -2.39 -0.02 2.51 16 34 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 35 H 0.03 1.33 6.41 -2.39 -0.02 1.32 16 36 H -0.01 -0.91 8.14 -2.38 -0.02 -0.93 16 37 H -0.02 -1.29 8.14 -2.39 -0.02 -1.31 16 38 H 0.27 15.42 8.31 -92.71 -0.77 14.65 16 39 H 0.05 0.99 8.05 -2.39 -0.02 0.97 16 40 H 0.09 1.93 7.87 -2.39 -0.02 1.91 16 41 H 0.07 1.85 8.14 -2.39 -0.02 1.83 16 42 H 0.10 1.72 8.14 -2.39 -0.02 1.71 16 Total: -1.00 -72.53 341.72 1.66 -70.86 By element: Atomic # 1 Polarization: 9.53 SS G_CDS: 0.98 Total: 10.51 kcal Atomic # 6 Polarization: -32.84 SS G_CDS: 4.08 Total: -28.76 kcal Atomic # 7 Polarization: -74.61 SS G_CDS: -3.89 Total: -78.51 kcal Atomic # 8 Polarization: -20.40 SS G_CDS: -1.53 Total: -21.93 kcal Atomic # 14 Polarization: 45.80 SS G_CDS: 2.03 Total: 47.83 kcal Total: -72.53 1.66 -70.86 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595658377.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.293 kcal (2) G-P(sol) polarization free energy of solvation -72.525 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.232 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.664 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.861 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.568 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds