Wall clock time and date at job start Mon Mar 30 2020 02:14:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38229 * 120.00474 * 2 1 4 4 C 1.38237 * 120.00330 * 180.02562 * 3 2 1 5 5 C 1.50702 * 120.00111 * 179.97438 * 4 3 2 6 6 C 1.38239 * 119.99868 * 0.02562 * 4 3 2 7 7 C 1.38229 * 119.99801 * 359.97438 * 6 4 3 8 8 C 1.50705 * 120.00109 * 179.97438 * 7 6 4 9 9 C 1.50700 * 109.47037 * 89.99902 * 8 7 6 10 10 O 1.21278 * 120.00197 * 0.02562 * 9 8 7 11 11 N 1.34778 * 119.99660 * 180.02562 * 9 8 7 12 12 C 1.46501 * 120.00108 * 359.97438 * 11 9 8 13 13 C 1.46504 * 119.99772 * 179.97438 * 11 9 8 14 14 H 1.09003 * 109.46918 * 0.02562 * 13 11 9 15 15 C 1.52996 * 109.47158 * 239.99608 * 13 11 9 16 16 C 1.50705 * 109.46856 * 119.99839 * 13 11 9 17 17 H 1.08000 * 120.00220 * 5.48067 * 16 13 11 18 18 C 1.37881 * 119.99984 * 185.48819 * 16 13 11 19 19 N 1.31506 * 120.00020 * 9.56648 * 18 16 13 20 20 Si 1.86794 * 119.99803 * 189.57501 * 18 16 13 21 21 H 1.48503 * 109.47465 * 84.99204 * 20 18 16 22 22 H 1.48501 * 109.47094 * 204.99017 * 20 18 16 23 23 H 1.48505 * 109.47435 * 324.98935 * 20 18 16 24 24 C 1.38236 * 120.00384 * 0.25620 * 7 6 4 25 25 H 1.08998 * 109.47018 * 89.99595 * 1 2 3 26 26 H 1.08994 * 109.47410 * 210.00137 * 1 2 3 27 27 H 1.09004 * 109.46399 * 329.99892 * 1 2 3 28 28 H 1.08001 * 119.99897 * 0.02562 * 3 2 1 29 29 H 1.08997 * 109.47211 * 270.02031 * 5 4 3 30 30 H 1.08995 * 109.47240 * 30.02109 * 5 4 3 31 31 H 1.09004 * 109.46915 * 150.02338 * 5 4 3 32 32 H 1.08001 * 119.99584 * 179.97438 * 6 4 3 33 33 H 1.09001 * 109.46613 * 330.00415 * 8 7 6 34 34 H 1.08993 * 109.47253 * 209.99802 * 8 7 6 35 35 H 1.09000 * 109.46911 * 269.99980 * 12 11 9 36 36 H 1.08998 * 109.47143 * 30.00077 * 12 11 9 37 37 H 1.09001 * 109.46925 * 150.00413 * 12 11 9 38 38 H 1.08996 * 109.47437 * 302.63525 * 15 13 11 39 39 H 1.09003 * 109.47053 * 62.63750 * 15 13 11 40 40 H 1.08999 * 109.46658 * 182.62997 * 15 13 11 41 41 H 0.96996 * 120.00362 * 180.02562 * 19 18 16 42 42 H 1.07999 * 120.00218 * 179.72649 * 24 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1970 0.0000 4 6 3.5806 1.1970 -0.0005 5 6 4.3342 2.5021 -0.0011 6 6 4.2717 -0.0002 -0.0016 7 6 3.5805 -1.1972 -0.0016 8 6 4.3339 -2.5025 -0.0034 9 6 4.5867 -2.9385 1.4169 10 8 4.1934 -2.2568 2.3396 11 7 5.2498 -4.0860 1.6616 12 6 5.7244 -4.9097 0.5469 13 6 5.4961 -4.5096 3.0422 14 1 5.0726 -3.7760 3.7283 15 6 7.0033 -4.6209 3.2804 16 6 4.8497 -5.8502 3.2792 17 1 4.3860 -6.3786 2.4594 18 6 4.8501 -6.4020 4.5428 19 7 5.2422 -5.6852 5.5732 20 14 4.2937 -8.1678 4.7909 21 1 5.4348 -9.0857 4.5443 22 1 3.8095 -8.3432 6.1837 23 1 3.1945 -8.4786 3.8419 24 6 2.1981 -1.1972 -0.0059 25 1 -0.3633 0.0001 -1.0276 26 1 -0.3634 -0.8899 0.5138 27 1 -0.3632 0.8900 0.5139 28 1 1.6583 2.1324 0.0004 29 1 4.5151 2.8167 -1.0289 30 1 3.7455 3.2618 0.5131 31 1 5.2870 2.3717 0.5120 32 1 5.3517 -0.0002 -0.0024 33 1 5.2857 -2.3718 -0.5182 34 1 3.7442 -3.2617 -0.5169 35 1 4.9523 -5.6281 0.2715 36 1 5.9479 -4.2710 -0.3076 37 1 6.6262 -5.4431 0.8475 38 1 7.4338 -5.3198 2.5633 39 1 7.4643 -3.6412 3.1547 40 1 7.1854 -4.9809 4.2930 41 1 5.2429 -6.0734 6.4621 42 1 1.6581 -2.1325 -0.0104 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597146802.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:14:04 Heat of formation + Delta-G solvation = -27.870563 kcal Electronic energy + Delta-G solvation = -21146.825252 eV Core-core repulsion = 18091.142925 eV Total energy + Delta-G solvation = -3055.682327 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -39.76560 -38.58864 -35.30679 -33.40472 -33.33922 -32.66079 -29.81445 -27.93763 -26.79368 -26.56295 -26.04331 -25.14259 -21.88077 -20.60983 -20.20501 -18.14675 -16.59493 -16.19792 -16.07822 -15.72950 -15.21493 -14.49106 -14.37410 -14.00134 -13.86425 -13.19826 -12.93186 -12.82920 -12.79246 -12.59875 -12.52225 -12.48808 -12.00220 -11.69918 -11.60510 -11.40305 -11.31899 -10.99306 -10.91609 -10.81211 -10.77699 -10.68338 -10.24906 -10.16086 -9.20888 -8.94636 -8.38790 -8.35524 -8.33184 -7.55143 -6.06425 -4.11172 1.54641 1.56761 3.27915 3.34498 3.36225 3.46947 3.77747 4.17002 4.43088 4.83144 4.88537 4.90644 5.24046 5.27477 5.32447 5.39097 5.41841 5.45931 5.56762 5.62707 5.66866 5.72400 5.72520 5.82109 5.87913 5.91354 6.07144 6.29176 6.29866 6.33845 6.69287 6.71142 6.71910 6.76252 6.83877 7.00605 7.21476 7.39627 7.57511 7.72768 7.95596 8.20508 8.57429 8.88837 9.12873 9.53969 11.00959 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.023642 B = 0.004160 C = 0.003924 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1184.063450 B = 6728.705701 C = 7134.478028 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.084 4.084 3 C -0.127 4.127 4 C -0.086 4.086 5 C -0.111 4.111 6 C -0.112 4.112 7 C -0.046 4.046 8 C -0.105 4.105 9 C 0.505 3.495 10 O -0.542 6.542 11 N -0.596 5.596 12 C 0.085 3.915 13 C 0.255 3.745 14 H 0.070 0.930 15 C -0.141 4.141 16 C -0.528 4.528 17 H 0.059 0.941 18 C 0.067 3.933 19 N -0.885 5.885 20 Si 0.894 3.106 21 H -0.279 1.279 22 H -0.286 1.286 23 H -0.275 1.275 24 C -0.110 4.110 25 H 0.066 0.934 26 H 0.066 0.934 27 H 0.063 0.937 28 H 0.116 0.884 29 H 0.066 0.934 30 H 0.063 0.937 31 H 0.065 0.935 32 H 0.117 0.883 33 H 0.095 0.905 34 H 0.096 0.904 35 H 0.048 0.952 36 H 0.052 0.948 37 H 0.072 0.928 38 H 0.032 0.968 39 H 0.015 0.985 40 H 0.075 0.925 41 H 0.263 0.737 42 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.506 10.137 -14.451 17.829 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.084 4.084 3 C -0.146 4.146 4 C -0.086 4.086 5 C -0.168 4.168 6 C -0.130 4.130 7 C -0.046 4.046 8 C -0.145 4.145 9 C 0.291 3.709 10 O -0.420 6.420 11 N -0.328 5.328 12 C -0.059 4.059 13 C 0.155 3.845 14 H 0.087 0.913 15 C -0.199 4.199 16 C -0.567 4.567 17 H 0.077 0.923 18 C -0.136 4.136 19 N -0.522 5.522 20 Si 0.722 3.278 21 H -0.205 1.205 22 H -0.212 1.212 23 H -0.200 1.200 24 C -0.128 4.128 25 H 0.085 0.915 26 H 0.085 0.915 27 H 0.082 0.918 28 H 0.134 0.866 29 H 0.085 0.915 30 H 0.082 0.918 31 H 0.084 0.916 32 H 0.135 0.865 33 H 0.113 0.887 34 H 0.114 0.886 35 H 0.067 0.933 36 H 0.071 0.929 37 H 0.090 0.910 38 H 0.051 0.949 39 H 0.035 0.965 40 H 0.094 0.906 41 H 0.073 0.927 42 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -2.675 10.468 -13.729 17.471 hybrid contribution -0.188 -1.244 0.221 1.277 sum -2.863 9.224 -13.508 16.605 Atomic orbital electron populations 1.20761 0.91447 1.02767 1.01881 1.19800 0.95807 0.93064 0.99761 1.20789 0.93465 0.97232 1.03066 1.19791 0.93797 0.95053 0.99939 1.20753 0.99992 0.94176 1.01859 1.20803 0.99406 0.91465 1.01320 1.19332 0.93511 0.93834 0.97950 1.20771 1.01307 0.95612 0.96769 1.20226 0.78919 0.81549 0.90177 1.90680 1.51245 1.54069 1.46015 1.48221 1.54538 1.20844 1.09184 1.21567 1.00228 0.95205 0.88862 1.18934 0.92338 0.96464 0.76746 0.91251 1.22022 0.98061 0.97407 1.02455 1.21276 1.37433 1.03299 0.94660 0.92314 1.24903 0.95206 0.97876 0.95659 1.69969 1.47456 1.35707 0.99074 0.86578 0.78870 0.84980 0.77373 1.20505 1.21216 1.20006 1.20842 0.93485 0.97530 1.00976 0.91493 0.91492 0.91773 0.86585 0.91514 0.91776 0.91588 0.86486 0.88700 0.88601 0.93334 0.92934 0.90952 0.94888 0.96545 0.90592 0.92700 0.86364 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.20 10.01 36.00 0.36 -0.84 16 2 C -0.08 -1.16 5.88 -104.62 -0.62 -1.78 16 3 C -0.13 -1.68 9.36 -39.59 -0.37 -2.05 16 4 C -0.09 -1.16 5.88 -104.62 -0.62 -1.77 16 5 C -0.11 -1.14 10.01 36.01 0.36 -0.78 16 6 C -0.11 -1.67 9.36 -39.58 -0.37 -2.04 16 7 C -0.05 -0.73 4.37 -104.62 -0.46 -1.18 16 8 C -0.10 -1.60 4.38 -29.03 -0.13 -1.73 16 9 C 0.50 10.64 7.67 -10.99 -0.08 10.56 16 10 O -0.54 -13.92 15.36 5.56 0.09 -13.83 16 11 N -0.60 -12.79 2.75 -175.26 -0.48 -13.28 16 12 C 0.09 1.40 9.43 59.85 0.56 1.97 16 13 C 0.26 6.61 2.50 -69.08 -0.17 6.43 16 14 H 0.07 2.12 6.84 -51.93 -0.36 1.76 16 15 C -0.14 -3.34 9.09 37.16 0.34 -3.00 16 16 C -0.53 -14.45 8.33 -34.44 -0.29 -14.73 16 17 H 0.06 1.58 7.53 -52.49 -0.40 1.18 16 18 C 0.07 1.84 5.18 -17.82 -0.09 1.75 16 19 N -0.88 -25.68 12.16 55.43 0.67 -25.01 16 20 Si 0.89 21.18 29.55 -169.99 -5.02 16.16 16 21 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 22 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 23 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 24 C -0.11 -1.69 9.36 -39.58 -0.37 -2.06 16 25 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 26 H 0.07 0.72 8.09 -51.93 -0.42 0.30 16 27 H 0.06 0.61 8.09 -51.93 -0.42 0.19 16 28 H 0.12 1.24 8.06 -52.49 -0.42 0.82 16 29 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 30 H 0.06 0.59 8.09 -51.93 -0.42 0.17 16 31 H 0.07 0.66 8.09 -51.93 -0.42 0.25 16 32 H 0.12 1.59 8.06 -52.49 -0.42 1.17 16 33 H 0.09 1.20 7.34 -51.93 -0.38 0.82 16 34 H 0.10 1.28 8.05 -51.93 -0.42 0.86 16 35 H 0.05 0.77 8.09 -51.93 -0.42 0.35 16 36 H 0.05 0.66 6.44 -51.93 -0.33 0.33 16 37 H 0.07 1.19 6.38 -51.93 -0.33 0.86 16 38 H 0.03 0.70 6.56 -51.93 -0.34 0.36 16 39 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 40 H 0.08 1.96 6.85 -51.93 -0.36 1.61 16 41 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 42 H 0.12 1.71 8.06 -52.49 -0.42 1.28 16 LS Contribution 345.29 15.07 5.20 5.20 Total: -1.00 -32.83 345.29 -8.16 -40.99 By element: Atomic # 1 Polarization: 7.68 SS G_CDS: -6.68 Total: 1.00 kcal Atomic # 6 Polarization: -9.30 SS G_CDS: -1.94 Total: -11.24 kcal Atomic # 7 Polarization: -38.47 SS G_CDS: 0.19 Total: -38.28 kcal Atomic # 8 Polarization: -13.92 SS G_CDS: 0.09 Total: -13.83 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.02 Total: 16.16 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -32.83 -8.16 -40.99 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597146802.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.122 kcal (2) G-P(sol) polarization free energy of solvation -32.828 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.706 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.165 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.992 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.871 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds