Wall clock time and date at job start Mon Mar 30 2020 02:14:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38229 * 120.00474 * 2 1 4 4 C 1.38237 * 120.00330 * 180.02562 * 3 2 1 5 5 C 1.50702 * 120.00111 * 179.97438 * 4 3 2 6 6 C 1.38239 * 119.99868 * 0.02562 * 4 3 2 7 7 C 1.38229 * 119.99801 * 359.97438 * 6 4 3 8 8 C 1.50705 * 120.00109 * 179.97438 * 7 6 4 9 9 C 1.50700 * 109.47037 * 89.99902 * 8 7 6 10 10 O 1.21278 * 120.00197 * 0.02562 * 9 8 7 11 11 N 1.34778 * 119.99660 * 180.02562 * 9 8 7 12 12 C 1.46501 * 120.00108 * 359.97438 * 11 9 8 13 13 C 1.46504 * 119.99772 * 179.97438 * 11 9 8 14 14 H 1.09003 * 109.46918 * 0.02562 * 13 11 9 15 15 C 1.52996 * 109.47158 * 239.99608 * 13 11 9 16 16 C 1.50705 * 109.46856 * 119.99839 * 13 11 9 17 17 H 1.08000 * 120.00220 * 5.48067 * 16 13 11 18 18 C 1.37881 * 119.99984 * 185.48819 * 16 13 11 19 19 N 1.31506 * 120.00020 * 9.56648 * 18 16 13 20 20 Si 1.86794 * 119.99803 * 189.57501 * 18 16 13 21 21 H 1.48503 * 109.47465 * 84.99204 * 20 18 16 22 22 H 1.48501 * 109.47094 * 204.99017 * 20 18 16 23 23 H 1.48505 * 109.47435 * 324.98935 * 20 18 16 24 24 C 1.38236 * 120.00384 * 0.25620 * 7 6 4 25 25 H 1.08998 * 109.47018 * 89.99595 * 1 2 3 26 26 H 1.08994 * 109.47410 * 210.00137 * 1 2 3 27 27 H 1.09004 * 109.46399 * 329.99892 * 1 2 3 28 28 H 1.08001 * 119.99897 * 0.02562 * 3 2 1 29 29 H 1.08997 * 109.47211 * 270.02031 * 5 4 3 30 30 H 1.08995 * 109.47240 * 30.02109 * 5 4 3 31 31 H 1.09004 * 109.46915 * 150.02338 * 5 4 3 32 32 H 1.08001 * 119.99584 * 179.97438 * 6 4 3 33 33 H 1.09001 * 109.46613 * 330.00415 * 8 7 6 34 34 H 1.08993 * 109.47253 * 209.99802 * 8 7 6 35 35 H 1.09000 * 109.46911 * 269.99980 * 12 11 9 36 36 H 1.08998 * 109.47143 * 30.00077 * 12 11 9 37 37 H 1.09001 * 109.46925 * 150.00413 * 12 11 9 38 38 H 1.08996 * 109.47437 * 302.63525 * 15 13 11 39 39 H 1.09003 * 109.47053 * 62.63750 * 15 13 11 40 40 H 1.08999 * 109.46658 * 182.62997 * 15 13 11 41 41 H 0.96996 * 120.00362 * 180.02562 * 19 18 16 42 42 H 1.07999 * 120.00218 * 179.72649 * 24 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1970 0.0000 4 6 3.5806 1.1970 -0.0005 5 6 4.3342 2.5021 -0.0011 6 6 4.2717 -0.0002 -0.0016 7 6 3.5805 -1.1972 -0.0016 8 6 4.3339 -2.5025 -0.0034 9 6 4.5867 -2.9385 1.4169 10 8 4.1934 -2.2568 2.3396 11 7 5.2498 -4.0860 1.6616 12 6 5.7244 -4.9097 0.5469 13 6 5.4961 -4.5096 3.0422 14 1 5.0726 -3.7760 3.7283 15 6 7.0033 -4.6209 3.2804 16 6 4.8497 -5.8502 3.2792 17 1 4.3860 -6.3786 2.4594 18 6 4.8501 -6.4020 4.5428 19 7 5.2422 -5.6852 5.5732 20 14 4.2937 -8.1678 4.7909 21 1 5.4348 -9.0857 4.5443 22 1 3.8095 -8.3432 6.1837 23 1 3.1945 -8.4786 3.8419 24 6 2.1981 -1.1972 -0.0059 25 1 -0.3633 0.0001 -1.0276 26 1 -0.3634 -0.8899 0.5138 27 1 -0.3632 0.8900 0.5139 28 1 1.6583 2.1324 0.0004 29 1 4.5151 2.8167 -1.0289 30 1 3.7455 3.2618 0.5131 31 1 5.2870 2.3717 0.5120 32 1 5.3517 -0.0002 -0.0024 33 1 5.2857 -2.3718 -0.5182 34 1 3.7442 -3.2617 -0.5169 35 1 4.9523 -5.6281 0.2715 36 1 5.9479 -4.2710 -0.3076 37 1 6.6262 -5.4431 0.8475 38 1 7.4338 -5.3198 2.5633 39 1 7.4643 -3.6412 3.1547 40 1 7.1854 -4.9809 4.2930 41 1 5.2429 -6.0734 6.4621 42 1 1.6581 -2.1325 -0.0104 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597146802.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:14:04 Heat of formation + Delta-G solvation = -46.301572 kcal Electronic energy + Delta-G solvation = -21147.624481 eV Core-core repulsion = 18091.142925 eV Total energy + Delta-G solvation = -3056.481555 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.08850 -39.98124 -37.11360 -34.88707 -34.35368 -34.28472 -31.63562 -29.09137 -27.85290 -27.54164 -27.52640 -27.22337 -23.50486 -21.62141 -21.60129 -19.75649 -18.52317 -17.84508 -17.25717 -16.98753 -16.89369 -16.11341 -15.91912 -15.19267 -14.89849 -14.60697 -14.28331 -14.11728 -13.97814 -13.83584 -13.79572 -13.59119 -13.33449 -13.20372 -12.96725 -12.85877 -12.81640 -12.58554 -12.50606 -12.30613 -12.24190 -12.09094 -11.83847 -11.82792 -11.22477 -10.65334 -10.48370 -9.46471 -9.39643 -9.30613 -8.16867 -6.30541 0.45452 0.50496 1.40840 1.41839 1.51468 1.85607 2.33435 2.49459 2.90175 3.11891 3.70651 3.88004 3.96208 3.99271 4.25012 4.35307 4.44660 4.48779 4.54260 4.62999 4.68119 4.71751 4.72555 4.81508 4.82378 4.84261 4.86628 4.99138 5.02244 5.07362 5.08017 5.29383 5.38542 5.46910 5.56556 5.65773 5.67274 5.68020 5.75584 6.00548 6.13844 6.19338 6.78591 6.86988 7.33839 7.52667 8.89952 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.023642 B = 0.004160 C = 0.003924 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1184.063450 B = 6728.705701 C = 7134.478028 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.093 4.093 3 C -0.135 4.135 4 C -0.093 4.093 5 C -0.109 4.109 6 C -0.132 4.132 7 C -0.067 4.067 8 C -0.089 4.089 9 C 0.496 3.504 10 O -0.600 6.600 11 N -0.603 5.603 12 C 0.080 3.920 13 C 0.258 3.742 14 H 0.009 0.991 15 C -0.126 4.126 16 C -0.539 4.539 17 H 0.062 0.938 18 C 0.014 3.986 19 N -0.921 5.921 20 Si 0.964 3.036 21 H -0.265 1.265 22 H -0.288 1.288 23 H -0.269 1.269 24 C -0.136 4.136 25 H 0.086 0.914 26 H 0.060 0.940 27 H 0.076 0.924 28 H 0.142 0.858 29 H 0.086 0.914 30 H 0.075 0.925 31 H 0.064 0.936 32 H 0.124 0.876 33 H 0.128 0.872 34 H 0.119 0.881 35 H 0.055 0.945 36 H 0.098 0.902 37 H 0.072 0.928 38 H 0.057 0.943 39 H 0.023 0.977 40 H 0.048 0.952 41 H 0.264 0.736 42 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.638 10.000 -16.802 19.730 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.093 4.093 3 C -0.153 4.153 4 C -0.093 4.093 5 C -0.165 4.165 6 C -0.150 4.150 7 C -0.068 4.068 8 C -0.128 4.128 9 C 0.285 3.715 10 O -0.482 6.482 11 N -0.334 5.334 12 C -0.062 4.062 13 C 0.155 3.845 14 H 0.027 0.973 15 C -0.185 4.185 16 C -0.578 4.578 17 H 0.080 0.920 18 C -0.185 4.185 19 N -0.559 5.559 20 Si 0.788 3.212 21 H -0.190 1.190 22 H -0.214 1.214 23 H -0.194 1.194 24 C -0.154 4.154 25 H 0.105 0.895 26 H 0.079 0.921 27 H 0.095 0.905 28 H 0.159 0.841 29 H 0.105 0.895 30 H 0.094 0.906 31 H 0.083 0.917 32 H 0.142 0.858 33 H 0.146 0.854 34 H 0.137 0.863 35 H 0.074 0.926 36 H 0.116 0.884 37 H 0.091 0.909 38 H 0.076 0.924 39 H 0.043 0.957 40 H 0.067 0.933 41 H 0.073 0.927 42 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -2.792 10.312 -16.135 19.351 hybrid contribution -0.176 -1.117 0.946 1.474 sum -2.967 9.195 -15.189 18.001 Atomic orbital electron populations 1.20806 0.89471 1.03133 1.03241 1.20203 0.97466 0.92854 0.98816 1.21163 0.93661 0.98099 1.02370 1.20227 0.94389 0.95974 0.98717 1.20803 0.99661 0.92806 1.03279 1.21049 0.99999 0.91927 1.02066 1.19513 0.93945 0.94344 0.98983 1.20733 1.03359 0.96040 0.92668 1.21253 0.77505 0.80642 0.92125 1.90645 1.53425 1.55731 1.48422 1.48250 1.54704 1.21696 1.08732 1.21867 1.00223 0.95700 0.88452 1.18531 0.93060 0.94261 0.78605 0.97259 1.21806 0.96856 0.98336 1.01477 1.21568 1.37463 1.03835 0.94917 0.91986 1.25783 0.95331 1.02067 0.95350 1.70121 1.48736 1.37585 0.99503 0.85493 0.78846 0.79779 0.77049 1.18991 1.21395 1.19361 1.21047 0.93758 0.98315 1.02261 0.89544 0.92052 0.90466 0.84056 0.89538 0.90582 0.91719 0.85806 0.85429 0.86301 0.92649 0.88394 0.90937 0.92399 0.95748 0.93296 0.92730 0.86492 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.20 10.01 71.24 0.71 -1.48 16 2 C -0.09 -2.49 5.88 -19.87 -0.12 -2.61 16 3 C -0.14 -3.35 9.36 22.27 0.21 -3.14 16 4 C -0.09 -2.40 5.88 -19.86 -0.12 -2.52 16 5 C -0.11 -2.02 10.01 71.24 0.71 -1.31 16 6 C -0.13 -3.86 9.36 22.27 0.21 -3.66 16 7 C -0.07 -2.11 4.37 -19.87 -0.09 -2.19 16 8 C -0.09 -2.58 4.38 29.10 0.13 -2.46 16 9 C 0.50 21.05 7.67 87.66 0.67 21.73 16 10 O -0.60 -32.25 15.36 -3.02 -0.05 -32.29 16 11 N -0.60 -25.76 2.75 -826.78 -2.28 -28.03 16 12 C 0.08 2.42 9.43 127.77 1.20 3.63 16 13 C 0.26 13.71 2.50 44.24 0.11 13.82 16 14 H 0.01 0.61 6.84 -2.39 -0.02 0.59 16 15 C -0.13 -6.06 9.09 71.98 0.65 -5.40 16 16 C -0.54 -29.86 8.33 25.60 0.21 -29.64 16 17 H 0.06 3.31 7.53 -2.91 -0.02 3.29 16 18 C 0.01 0.80 5.18 84.66 0.44 1.24 16 19 N -0.92 -55.13 12.16 21.45 0.26 -54.87 16 20 Si 0.96 43.57 29.55 68.60 2.03 45.60 16 21 H -0.26 -11.32 7.11 99.48 0.71 -10.61 16 22 H -0.29 -13.01 7.11 99.48 0.71 -12.31 16 23 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 24 C -0.14 -4.15 9.36 22.27 0.21 -3.94 16 25 H 0.09 1.38 8.14 -2.39 -0.02 1.36 16 26 H 0.06 1.28 8.09 -2.39 -0.02 1.26 16 27 H 0.08 1.32 8.09 -2.39 -0.02 1.30 16 28 H 0.14 2.68 8.06 -2.91 -0.02 2.65 16 29 H 0.09 1.27 8.14 -2.39 -0.02 1.25 16 30 H 0.08 1.22 8.09 -2.39 -0.02 1.20 16 31 H 0.06 1.21 8.09 -2.39 -0.02 1.19 16 32 H 0.12 3.28 8.06 -2.91 -0.02 3.26 16 33 H 0.13 2.83 7.34 -2.39 -0.02 2.81 16 34 H 0.12 2.89 8.05 -2.39 -0.02 2.87 16 35 H 0.05 1.62 8.09 -2.39 -0.02 1.60 16 36 H 0.10 2.08 6.44 -2.39 -0.02 2.06 16 37 H 0.07 2.20 6.38 -2.39 -0.02 2.19 16 38 H 0.06 2.43 6.56 -2.39 -0.02 2.42 16 39 H 0.02 1.08 8.14 -2.39 -0.02 1.06 16 40 H 0.05 2.59 6.85 -2.39 -0.02 2.57 16 41 H 0.26 14.94 8.31 -92.71 -0.77 14.17 16 42 H 0.12 3.43 8.06 -2.91 -0.02 3.40 16 Total: -1.00 -75.14 345.29 6.11 -69.03 By element: Atomic # 1 Polarization: 17.51 SS G_CDS: 0.99 Total: 18.50 kcal Atomic # 6 Polarization: -23.09 SS G_CDS: 5.15 Total: -17.94 kcal Atomic # 7 Polarization: -80.89 SS G_CDS: -2.02 Total: -82.91 kcal Atomic # 8 Polarization: -32.25 SS G_CDS: -0.05 Total: -32.29 kcal Atomic # 14 Polarization: 43.57 SS G_CDS: 2.03 Total: 45.60 kcal Total: -75.14 6.11 -69.03 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597146802.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.733 kcal (2) G-P(sol) polarization free energy of solvation -75.140 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.407 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.105 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.035 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.302 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds