Wall clock time and date at job start Mon Mar 30 2020 02:14:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38234 * 119.99481 * 2 1 4 4 C 1.38232 * 119.99866 * 180.02562 * 3 2 1 5 5 C 1.50706 * 120.00317 * 179.97438 * 4 3 2 6 6 C 1.38243 * 120.00069 * 359.86117 * 4 3 2 7 7 C 1.38235 * 119.99602 * 0.09581 * 6 4 3 8 8 C 1.50701 * 119.99808 * 179.97438 * 7 6 4 9 9 C 1.50701 * 109.47148 * 89.99755 * 8 7 6 10 10 O 1.21286 * 119.99909 * 0.02562 * 9 8 7 11 11 N 1.34774 * 120.00373 * 179.97438 * 9 8 7 12 12 C 1.46500 * 119.99697 * 0.02562 * 11 9 8 13 13 C 1.46492 * 120.00345 * 180.02562 * 11 9 8 14 14 H 1.09003 * 109.46921 * 359.97438 * 13 11 9 15 15 C 1.52997 * 109.47357 * 120.00402 * 13 11 9 16 16 C 1.50700 * 109.47197 * 240.00547 * 13 11 9 17 17 H 1.08001 * 120.00235 * 359.97438 * 16 13 11 18 18 C 1.37875 * 120.00167 * 179.97438 * 16 13 11 19 19 N 1.31516 * 120.00112 * 0.02562 * 18 16 13 20 20 Si 1.86806 * 120.00278 * 179.97438 * 18 16 13 21 21 H 1.48499 * 109.46719 * 89.99946 * 20 18 16 22 22 H 1.48493 * 109.47221 * 209.99951 * 20 18 16 23 23 H 1.48496 * 109.46873 * 330.00430 * 20 18 16 24 24 C 1.38230 * 120.00326 * 359.97438 * 7 6 4 25 25 H 1.08998 * 109.46764 * 270.01756 * 1 2 3 26 26 H 1.08993 * 109.47236 * 30.01617 * 1 2 3 27 27 H 1.09003 * 109.46896 * 150.02164 * 1 2 3 28 28 H 1.07997 * 120.00441 * 0.02562 * 3 2 1 29 29 H 1.09001 * 109.47060 * 269.88636 * 5 4 3 30 30 H 1.08998 * 109.46941 * 29.88580 * 5 4 3 31 31 H 1.08998 * 109.47482 * 149.88729 * 5 4 3 32 32 H 1.08000 * 119.99728 * 180.36512 * 6 4 3 33 33 H 1.08993 * 109.47341 * 210.00461 * 8 7 6 34 34 H 1.09001 * 109.46864 * 330.00546 * 8 7 6 35 35 H 1.09000 * 109.47245 * 89.99535 * 12 11 9 36 36 H 1.08998 * 109.47120 * 209.99674 * 12 11 9 37 37 H 1.09004 * 109.46914 * 329.99446 * 12 11 9 38 38 H 1.09004 * 109.46589 * 299.99913 * 15 13 11 39 39 H 1.08999 * 109.47139 * 59.99887 * 15 13 11 40 40 H 1.09002 * 109.47147 * 180.02562 * 15 13 11 41 41 H 0.97000 * 120.00238 * 179.97438 * 19 18 16 42 42 H 1.08001 * 120.00371 * 179.97438 * 24 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1981 1.1972 0.0000 4 6 3.5804 1.1973 -0.0005 5 6 4.3339 2.5025 -0.0011 6 6 4.2717 0.0001 0.0018 7 6 3.5806 -1.1970 0.0027 8 6 4.3341 -2.5021 0.0047 9 6 4.5844 -2.9355 1.4262 10 8 4.1893 -2.2521 2.3470 11 7 5.2464 -4.0829 1.6743 12 6 5.7231 -4.9087 0.5621 13 6 5.4892 -4.5045 3.0561 14 1 5.0653 -3.7692 3.7401 15 6 4.8318 -5.8648 3.2973 16 6 6.9731 -4.6144 3.2944 17 1 7.6661 -4.3928 2.4962 18 6 7.4462 -4.9978 4.5314 19 7 6.6024 -5.2681 5.5033 20 14 9.2857 -5.1347 4.8266 21 1 9.8083 -3.8303 5.3069 22 1 9.5465 -6.1793 5.8493 23 1 9.9645 -5.5032 3.5583 24 6 2.1983 -1.1971 0.0018 25 1 -0.3633 0.0003 1.0277 26 1 -0.3633 0.8898 -0.5140 27 1 -0.3633 -0.8902 -0.5135 28 1 1.6581 2.1325 0.0004 29 1 4.5170 2.8159 -1.0289 30 1 3.7441 3.2627 0.5110 31 1 5.2857 2.3728 0.5141 32 1 5.3517 0.0003 0.0074 33 1 3.7455 -3.2623 -0.5087 34 1 5.2869 -2.3722 -0.5085 35 1 6.7315 -4.5999 0.2864 36 1 5.7339 -5.9556 0.8653 37 1 5.0587 -4.7850 -0.2931 38 1 3.7584 -5.7852 3.1250 39 1 5.2561 -6.5998 2.6134 40 1 5.0121 -6.1782 4.3256 41 1 6.9352 -5.5382 6.3734 42 1 1.6583 -2.1324 0.0021 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597146803.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:14:08 Heat of formation + Delta-G solvation = -26.933668 kcal Electronic energy + Delta-G solvation = -21147.916620 eV Core-core repulsion = 18092.274920 eV Total energy + Delta-G solvation = -3055.641700 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -39.77329 -38.59537 -35.31604 -33.41149 -33.34917 -32.69533 -29.73052 -27.92123 -26.79386 -26.56951 -26.02400 -25.17892 -21.85697 -20.61669 -20.19188 -18.15296 -16.58614 -16.21015 -16.09884 -15.73746 -15.21862 -14.49207 -14.38398 -14.02661 -13.85761 -13.18970 -12.93651 -12.83849 -12.80298 -12.59142 -12.52389 -12.48488 -12.01340 -11.65108 -11.54172 -11.41563 -11.30976 -11.03179 -10.85973 -10.81978 -10.79804 -10.63387 -10.21867 -10.14525 -9.16604 -8.96490 -8.42237 -8.36165 -8.33330 -7.54178 -6.05249 -4.13193 1.53874 1.56157 3.27963 3.34187 3.35632 3.45862 3.77349 4.16587 4.42502 4.82287 4.87789 4.89964 5.24796 5.26485 5.31452 5.37595 5.41151 5.45486 5.58098 5.62350 5.66700 5.71590 5.72461 5.82425 5.86878 5.90407 6.08808 6.29047 6.31589 6.33219 6.68950 6.71045 6.78335 6.83089 6.84375 7.08229 7.20904 7.47420 7.55735 7.74115 8.04286 8.22495 8.57525 8.86427 9.11822 9.53461 11.00034 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.023543 B = 0.004166 C = 0.003907 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1189.048121 B = 6719.390558 C = 7164.288504 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.086 4.086 3 C -0.127 4.127 4 C -0.085 4.085 5 C -0.112 4.112 6 C -0.110 4.110 7 C -0.046 4.046 8 C -0.105 4.105 9 C 0.505 3.495 10 O -0.544 6.544 11 N -0.596 5.596 12 C 0.086 3.914 13 C 0.257 3.743 14 H 0.063 0.937 15 C -0.147 4.147 16 C -0.524 4.524 17 H 0.058 0.942 18 C 0.064 3.936 19 N -0.888 5.888 20 Si 0.898 3.102 21 H -0.280 1.280 22 H -0.286 1.286 23 H -0.274 1.274 24 C -0.112 4.112 25 H 0.069 0.931 26 H 0.062 0.938 27 H 0.064 0.936 28 H 0.116 0.884 29 H 0.066 0.934 30 H 0.063 0.937 31 H 0.066 0.934 32 H 0.118 0.882 33 H 0.095 0.905 34 H 0.096 0.904 35 H 0.048 0.952 36 H 0.072 0.928 37 H 0.052 0.948 38 H 0.011 0.989 39 H 0.030 0.970 40 H 0.093 0.907 41 H 0.263 0.737 42 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.363 7.933 -14.198 17.853 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.086 4.086 3 C -0.146 4.146 4 C -0.085 4.085 5 C -0.169 4.169 6 C -0.128 4.128 7 C -0.046 4.046 8 C -0.145 4.145 9 C 0.291 3.709 10 O -0.422 6.422 11 N -0.327 5.327 12 C -0.058 4.058 13 C 0.157 3.843 14 H 0.081 0.919 15 C -0.205 4.205 16 C -0.563 4.563 17 H 0.077 0.923 18 C -0.138 4.138 19 N -0.527 5.527 20 Si 0.726 3.274 21 H -0.206 1.206 22 H -0.211 1.211 23 H -0.199 1.199 24 C -0.130 4.130 25 H 0.088 0.912 26 H 0.081 0.919 27 H 0.083 0.917 28 H 0.134 0.866 29 H 0.085 0.915 30 H 0.082 0.918 31 H 0.085 0.915 32 H 0.136 0.864 33 H 0.113 0.887 34 H 0.114 0.886 35 H 0.067 0.933 36 H 0.091 0.909 37 H 0.070 0.930 38 H 0.030 0.970 39 H 0.049 0.951 40 H 0.112 0.888 41 H 0.073 0.927 42 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -7.562 8.204 -13.491 17.507 hybrid contribution 1.170 -0.299 0.230 1.229 sum -6.392 7.904 -13.261 16.709 Atomic orbital electron populations 1.20756 0.91466 1.02285 1.02278 1.19792 0.95767 0.93091 0.99918 1.20786 0.93469 0.97223 1.03075 1.19802 0.93783 0.95086 0.99783 1.20762 1.00061 0.94137 1.01891 1.20840 0.99560 0.91454 1.00985 1.19333 0.93469 0.93883 0.97946 1.20770 1.01488 0.95461 0.96747 1.20236 0.78970 0.81508 0.90181 1.90674 1.51796 1.53543 1.46221 1.48238 1.54035 1.21196 1.09268 1.21559 0.98469 0.96910 0.88837 1.18921 0.95547 0.93318 0.76497 0.91943 1.22090 0.95593 0.98724 1.04102 1.21325 0.91228 1.46436 0.97301 0.92343 1.24897 0.98023 0.95070 0.95829 1.69882 1.33835 1.46038 1.02908 0.86501 0.85138 0.77828 0.77957 1.20633 1.21128 1.19935 1.20803 0.93440 0.97439 1.01315 0.91249 0.91880 0.91725 0.86581 0.91487 0.91777 0.91505 0.86367 0.88681 0.88599 0.93348 0.90901 0.92964 0.97025 0.95123 0.88839 0.92721 0.86478 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.14 10.01 36.01 0.36 -0.78 16 2 C -0.09 -1.15 5.88 -104.62 -0.62 -1.77 16 3 C -0.13 -1.67 9.36 -39.58 -0.37 -2.04 16 4 C -0.08 -1.16 5.88 -104.62 -0.62 -1.77 16 5 C -0.11 -1.19 10.01 36.01 0.36 -0.83 16 6 C -0.11 -1.68 9.36 -39.58 -0.37 -2.05 16 7 C -0.05 -0.72 4.37 -104.63 -0.46 -1.18 16 8 C -0.10 -1.60 4.38 -29.03 -0.13 -1.73 16 9 C 0.50 10.62 7.67 -10.99 -0.08 10.53 16 10 O -0.54 -13.88 15.36 5.55 0.09 -13.79 16 11 N -0.60 -12.82 2.75 -175.27 -0.48 -13.31 16 12 C 0.09 1.44 9.48 59.85 0.57 2.00 16 13 C 0.26 6.68 2.63 -69.09 -0.18 6.50 16 14 H 0.06 1.89 6.90 -51.93 -0.36 1.54 16 15 C -0.15 -3.55 8.95 37.16 0.33 -3.22 16 16 C -0.52 -14.35 8.37 -34.44 -0.29 -14.63 16 17 H 0.06 1.57 7.65 -52.49 -0.40 1.17 16 18 C 0.06 1.77 5.30 -17.82 -0.09 1.67 16 19 N -0.89 -25.44 11.32 55.43 0.63 -24.81 16 20 Si 0.90 21.22 29.54 -169.99 -5.02 16.20 16 21 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 22 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 23 H -0.27 -6.33 7.11 56.52 0.40 -5.92 16 24 C -0.11 -1.67 9.36 -39.59 -0.37 -2.04 16 25 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 26 H 0.06 0.54 8.08 -51.93 -0.42 0.12 16 27 H 0.06 0.59 8.09 -51.93 -0.42 0.17 16 28 H 0.12 1.24 8.06 -52.49 -0.42 0.82 16 29 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.06 0.61 8.08 -51.93 -0.42 0.19 16 31 H 0.07 0.71 8.09 -51.93 -0.42 0.29 16 32 H 0.12 1.70 8.06 -52.49 -0.42 1.27 16 33 H 0.09 1.21 7.34 -51.93 -0.38 0.83 16 34 H 0.10 1.28 8.05 -51.93 -0.42 0.86 16 35 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 36 H 0.07 1.23 6.43 -51.93 -0.33 0.90 16 37 H 0.05 0.67 6.44 -51.93 -0.33 0.33 16 38 H 0.01 0.25 8.14 -51.93 -0.42 -0.18 16 39 H 0.03 0.68 6.66 -51.93 -0.35 0.33 16 40 H 0.09 2.48 6.07 -51.93 -0.32 2.17 16 41 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 42 H 0.12 1.59 8.06 -52.49 -0.42 1.17 16 LS Contribution 344.25 15.07 5.19 5.19 Total: -1.00 -32.49 344.25 -8.22 -40.71 By element: Atomic # 1 Polarization: 7.81 SS G_CDS: -6.66 Total: 1.14 kcal Atomic # 6 Polarization: -9.37 SS G_CDS: -1.95 Total: -11.33 kcal Atomic # 7 Polarization: -38.26 SS G_CDS: 0.15 Total: -38.12 kcal Atomic # 8 Polarization: -13.88 SS G_CDS: 0.09 Total: -13.79 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.02 Total: 16.20 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -32.49 -8.22 -40.71 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597146803.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.772 kcal (2) G-P(sol) polarization free energy of solvation -32.486 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.714 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.219 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.705 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.934 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds