Wall clock time and date at job start Mon Mar 30 2020 02:14:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38234 * 119.99481 * 2 1 4 4 C 1.38232 * 119.99866 * 180.02562 * 3 2 1 5 5 C 1.50706 * 120.00317 * 179.97438 * 4 3 2 6 6 C 1.38243 * 120.00069 * 359.86117 * 4 3 2 7 7 C 1.38235 * 119.99602 * 0.09581 * 6 4 3 8 8 C 1.50701 * 119.99808 * 179.97438 * 7 6 4 9 9 C 1.50701 * 109.47148 * 89.99755 * 8 7 6 10 10 O 1.21286 * 119.99909 * 0.02562 * 9 8 7 11 11 N 1.34774 * 120.00373 * 179.97438 * 9 8 7 12 12 C 1.46500 * 119.99697 * 0.02562 * 11 9 8 13 13 C 1.46492 * 120.00345 * 180.02562 * 11 9 8 14 14 H 1.09003 * 109.46921 * 359.97438 * 13 11 9 15 15 C 1.52997 * 109.47357 * 120.00402 * 13 11 9 16 16 C 1.50700 * 109.47197 * 240.00547 * 13 11 9 17 17 H 1.08001 * 120.00235 * 359.97438 * 16 13 11 18 18 C 1.37875 * 120.00167 * 179.97438 * 16 13 11 19 19 N 1.31516 * 120.00112 * 0.02562 * 18 16 13 20 20 Si 1.86806 * 120.00278 * 179.97438 * 18 16 13 21 21 H 1.48499 * 109.46719 * 89.99946 * 20 18 16 22 22 H 1.48493 * 109.47221 * 209.99951 * 20 18 16 23 23 H 1.48496 * 109.46873 * 330.00430 * 20 18 16 24 24 C 1.38230 * 120.00326 * 359.97438 * 7 6 4 25 25 H 1.08998 * 109.46764 * 270.01756 * 1 2 3 26 26 H 1.08993 * 109.47236 * 30.01617 * 1 2 3 27 27 H 1.09003 * 109.46896 * 150.02164 * 1 2 3 28 28 H 1.07997 * 120.00441 * 0.02562 * 3 2 1 29 29 H 1.09001 * 109.47060 * 269.88636 * 5 4 3 30 30 H 1.08998 * 109.46941 * 29.88580 * 5 4 3 31 31 H 1.08998 * 109.47482 * 149.88729 * 5 4 3 32 32 H 1.08000 * 119.99728 * 180.36512 * 6 4 3 33 33 H 1.08993 * 109.47341 * 210.00461 * 8 7 6 34 34 H 1.09001 * 109.46864 * 330.00546 * 8 7 6 35 35 H 1.09000 * 109.47245 * 89.99535 * 12 11 9 36 36 H 1.08998 * 109.47120 * 209.99674 * 12 11 9 37 37 H 1.09004 * 109.46914 * 329.99446 * 12 11 9 38 38 H 1.09004 * 109.46589 * 299.99913 * 15 13 11 39 39 H 1.08999 * 109.47139 * 59.99887 * 15 13 11 40 40 H 1.09002 * 109.47147 * 180.02562 * 15 13 11 41 41 H 0.97000 * 120.00238 * 179.97438 * 19 18 16 42 42 H 1.08001 * 120.00371 * 179.97438 * 24 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1981 1.1972 0.0000 4 6 3.5804 1.1973 -0.0005 5 6 4.3339 2.5025 -0.0011 6 6 4.2717 0.0001 0.0018 7 6 3.5806 -1.1970 0.0027 8 6 4.3341 -2.5021 0.0047 9 6 4.5844 -2.9355 1.4262 10 8 4.1893 -2.2521 2.3470 11 7 5.2464 -4.0829 1.6743 12 6 5.7231 -4.9087 0.5621 13 6 5.4892 -4.5045 3.0561 14 1 5.0653 -3.7692 3.7401 15 6 4.8318 -5.8648 3.2973 16 6 6.9731 -4.6144 3.2944 17 1 7.6661 -4.3928 2.4962 18 6 7.4462 -4.9978 4.5314 19 7 6.6024 -5.2681 5.5033 20 14 9.2857 -5.1347 4.8266 21 1 9.8083 -3.8303 5.3069 22 1 9.5465 -6.1793 5.8493 23 1 9.9645 -5.5032 3.5583 24 6 2.1983 -1.1971 0.0018 25 1 -0.3633 0.0003 1.0277 26 1 -0.3633 0.8898 -0.5140 27 1 -0.3633 -0.8902 -0.5135 28 1 1.6581 2.1325 0.0004 29 1 4.5170 2.8159 -1.0289 30 1 3.7441 3.2627 0.5110 31 1 5.2857 2.3728 0.5141 32 1 5.3517 0.0003 0.0074 33 1 3.7455 -3.2623 -0.5087 34 1 5.2869 -2.3722 -0.5085 35 1 6.7315 -4.5999 0.2864 36 1 5.7339 -5.9556 0.8653 37 1 5.0587 -4.7850 -0.2931 38 1 3.7584 -5.7852 3.1250 39 1 5.2561 -6.5998 2.6134 40 1 5.0121 -6.1782 4.3256 41 1 6.9352 -5.5382 6.3734 42 1 1.6583 -2.1324 0.0021 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597146803.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:14:07 Heat of formation + Delta-G solvation = -44.885042 kcal Electronic energy + Delta-G solvation = -21148.695050 eV Core-core repulsion = 18092.274920 eV Total energy + Delta-G solvation = -3056.420130 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.09480 -39.98561 -37.13009 -34.91059 -34.35408 -34.29105 -31.55334 -29.08006 -27.85330 -27.54449 -27.52875 -27.25440 -23.47771 -21.61637 -21.60131 -19.76567 -18.51857 -17.86493 -17.26203 -17.00638 -16.89410 -16.12205 -15.91746 -15.19736 -14.90721 -14.63433 -14.28270 -14.09732 -13.98061 -13.83028 -13.80101 -13.47112 -13.32300 -13.20733 -12.97888 -12.93689 -12.72587 -12.64665 -12.48901 -12.31022 -12.17333 -12.10183 -11.83593 -11.82904 -11.18394 -10.69531 -10.48808 -9.46806 -9.40010 -9.30293 -8.14848 -6.31784 0.45169 0.50325 1.40368 1.41728 1.51776 1.84623 2.32577 2.49312 2.89969 3.12816 3.70475 3.87852 3.95956 3.98609 4.24766 4.34942 4.44663 4.48566 4.54853 4.63081 4.69419 4.72056 4.73528 4.81793 4.82402 4.85736 4.87923 5.01364 5.04707 5.07579 5.08492 5.29282 5.38483 5.46398 5.62545 5.65614 5.67327 5.68457 5.75489 6.04516 6.16278 6.19170 6.76672 6.86597 7.33204 7.51760 8.89433 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.023543 B = 0.004166 C = 0.003907 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1189.048121 B = 6719.390558 C = 7164.288504 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.093 4.093 3 C -0.135 4.135 4 C -0.093 4.093 5 C -0.110 4.110 6 C -0.135 4.135 7 C -0.067 4.067 8 C -0.089 4.089 9 C 0.496 3.504 10 O -0.601 6.601 11 N -0.603 5.603 12 C 0.081 3.919 13 C 0.260 3.740 14 H 0.005 0.995 15 C -0.132 4.132 16 C -0.537 4.537 17 H 0.060 0.940 18 C 0.014 3.986 19 N -0.919 5.919 20 Si 0.965 3.035 21 H -0.283 1.283 22 H -0.280 1.280 23 H -0.260 1.260 24 C -0.132 4.132 25 H 0.068 0.932 26 H 0.083 0.917 27 H 0.074 0.926 28 H 0.142 0.858 29 H 0.086 0.914 30 H 0.076 0.924 31 H 0.061 0.939 32 H 0.117 0.883 33 H 0.127 0.873 34 H 0.119 0.881 35 H 0.055 0.945 36 H 0.070 0.930 37 H 0.098 0.902 38 H 0.019 0.981 39 H 0.049 0.951 40 H 0.066 0.934 41 H 0.264 0.736 42 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.165 8.224 -16.444 19.732 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.093 4.093 3 C -0.153 4.153 4 C -0.093 4.093 5 C -0.166 4.166 6 C -0.153 4.153 7 C -0.068 4.068 8 C -0.128 4.128 9 C 0.285 3.715 10 O -0.483 6.483 11 N -0.334 5.334 12 C -0.061 4.061 13 C 0.158 3.842 14 H 0.023 0.977 15 C -0.191 4.191 16 C -0.576 4.576 17 H 0.079 0.921 18 C -0.186 4.186 19 N -0.558 5.558 20 Si 0.790 3.210 21 H -0.209 1.209 22 H -0.205 1.205 23 H -0.184 1.184 24 C -0.150 4.150 25 H 0.087 0.913 26 H 0.102 0.898 27 H 0.093 0.907 28 H 0.160 0.840 29 H 0.104 0.896 30 H 0.095 0.905 31 H 0.080 0.920 32 H 0.135 0.865 33 H 0.145 0.855 34 H 0.137 0.863 35 H 0.074 0.926 36 H 0.088 0.912 37 H 0.116 0.884 38 H 0.038 0.962 39 H 0.068 0.932 40 H 0.085 0.915 41 H 0.073 0.927 42 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -7.358 8.475 -15.789 19.371 hybrid contribution 1.050 -0.331 0.933 1.443 sum -6.308 8.144 -14.855 18.077 Atomic orbital electron populations 1.20806 0.89255 1.03871 1.02648 1.20224 0.97556 0.92802 0.98750 1.21167 0.93493 0.98276 1.02324 1.20205 0.94501 0.95811 0.98827 1.20807 0.99616 0.92980 1.03242 1.21046 0.99815 0.92251 1.02202 1.19508 0.94103 0.94166 0.99015 1.20732 1.03254 0.96197 0.92639 1.21255 0.77571 0.80525 0.92151 1.90639 1.53911 1.55123 1.48583 1.48255 1.54190 1.22163 1.08749 1.21846 0.99950 0.95823 0.88485 1.18508 0.94810 0.92425 0.78442 0.97722 1.21870 0.96075 0.98219 1.02886 1.21587 0.91972 1.46408 0.97635 0.92147 1.25759 1.02593 0.94665 0.95566 1.70030 1.35863 1.46611 1.03281 0.85455 0.79602 0.77587 0.78371 1.20913 1.20496 1.18428 1.21053 0.93446 0.98495 1.02043 0.91327 0.89824 0.90711 0.84048 0.89560 0.90472 0.92018 0.86455 0.85489 0.86264 0.92615 0.91172 0.88397 0.96196 0.93165 0.91515 0.92678 0.85823 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.02 10.01 71.24 0.71 -1.31 16 2 C -0.09 -2.39 5.88 -19.87 -0.12 -2.51 16 3 C -0.13 -3.32 9.36 22.27 0.21 -3.11 16 4 C -0.09 -2.47 5.88 -19.86 -0.12 -2.59 16 5 C -0.11 -2.16 10.01 71.24 0.71 -1.45 16 6 C -0.14 -4.09 9.36 22.27 0.21 -3.88 16 7 C -0.07 -2.10 4.37 -19.87 -0.09 -2.18 16 8 C -0.09 -2.58 4.38 29.10 0.13 -2.46 16 9 C 0.50 20.99 7.67 87.66 0.67 21.66 16 10 O -0.60 -31.97 15.36 -3.05 -0.05 -32.02 16 11 N -0.60 -25.86 2.75 -826.81 -2.28 -28.14 16 12 C 0.08 2.51 9.48 127.77 1.21 3.72 16 13 C 0.26 13.91 2.63 44.25 0.12 14.03 16 14 H 0.00 0.31 6.90 -2.39 -0.02 0.29 16 15 C -0.13 -6.49 8.95 71.98 0.64 -5.85 16 16 C -0.54 -29.79 8.37 25.60 0.21 -29.57 16 17 H 0.06 3.24 7.65 -2.91 -0.02 3.22 16 18 C 0.01 0.75 5.30 84.65 0.45 1.20 16 19 N -0.92 -53.99 11.32 21.45 0.24 -53.75 16 20 Si 0.96 43.60 29.54 68.60 2.03 45.63 16 21 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16 22 H -0.28 -12.28 7.11 99.48 0.71 -11.57 16 23 H -0.26 -11.08 7.11 99.48 0.71 -10.37 16 24 C -0.13 -3.85 9.36 22.27 0.21 -3.64 16 25 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 26 H 0.08 1.19 8.08 -2.39 -0.02 1.17 16 27 H 0.07 1.22 8.09 -2.39 -0.02 1.20 16 28 H 0.14 2.65 8.06 -2.91 -0.02 2.63 16 29 H 0.09 1.36 8.14 -2.39 -0.02 1.34 16 30 H 0.08 1.30 8.08 -2.39 -0.02 1.28 16 31 H 0.06 1.27 8.09 -2.39 -0.02 1.25 16 32 H 0.12 3.40 8.06 -2.91 -0.02 3.38 16 33 H 0.13 2.83 7.34 -2.39 -0.02 2.81 16 34 H 0.12 2.89 8.05 -2.39 -0.02 2.87 16 35 H 0.06 1.65 8.14 -2.39 -0.02 1.63 16 36 H 0.07 2.21 6.43 -2.39 -0.02 2.20 16 37 H 0.10 2.12 6.44 -2.38 -0.02 2.11 16 38 H 0.02 0.89 8.14 -2.38 -0.02 0.87 16 39 H 0.05 2.21 6.66 -2.39 -0.02 2.20 16 40 H 0.07 3.65 6.07 -2.39 -0.01 3.63 16 41 H 0.26 14.68 8.31 -92.71 -0.77 13.91 16 42 H 0.12 3.27 8.06 -2.91 -0.02 3.24 16 Total: -1.00 -73.90 344.25 6.10 -67.80 By element: Atomic # 1 Polarization: 17.43 SS G_CDS: 0.99 Total: 18.42 kcal Atomic # 6 Polarization: -23.10 SS G_CDS: 5.17 Total: -17.93 kcal Atomic # 7 Polarization: -79.86 SS G_CDS: -2.03 Total: -81.89 kcal Atomic # 8 Polarization: -31.97 SS G_CDS: -0.05 Total: -32.02 kcal Atomic # 14 Polarization: 43.60 SS G_CDS: 2.03 Total: 45.63 kcal Total: -73.90 6.10 -67.80 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597146803.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.911 kcal (2) G-P(sol) polarization free energy of solvation -73.897 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.986 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.101 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.796 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.885 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds