Wall clock time and date at job start Mon Mar 30 2020 02:13:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38234 * 119.99503 * 2 1 4 4 C 1.38231 * 119.99892 * 180.02562 * 3 2 1 5 5 C 1.50706 * 120.00319 * 180.02562 * 4 3 2 6 6 C 1.38243 * 120.00070 * 359.90902 * 4 3 2 7 7 C 1.38235 * 119.99602 * 0.07188 * 6 4 3 8 8 C 1.50701 * 119.99808 * 179.97438 * 7 6 4 9 9 C 1.50701 * 109.47148 * 89.99755 * 8 7 6 10 10 O 1.21286 * 119.99909 * 0.02562 * 9 8 7 11 11 N 1.34774 * 120.00373 * 179.97438 * 9 8 7 12 12 C 1.46492 * 120.00345 * 180.02562 * 11 9 8 13 13 C 1.53001 * 109.47251 * 180.02562 * 12 11 9 14 14 C 1.53006 * 109.47057 * 180.02562 * 13 12 11 15 15 C 1.50696 * 109.46928 * 180.02562 * 14 13 12 16 16 H 1.08002 * 120.00181 * 359.97438 * 15 14 13 17 17 C 1.37882 * 119.99941 * 179.97438 * 15 14 13 18 18 N 1.31508 * 119.99848 * 179.97438 * 17 15 14 19 19 Si 1.86793 * 119.99885 * 359.97438 * 17 15 14 20 20 H 1.48505 * 109.47286 * 89.99833 * 19 17 15 21 21 H 1.48501 * 109.47036 * 210.00074 * 19 17 15 22 22 H 1.48506 * 109.47183 * 330.00049 * 19 17 15 23 23 C 1.38230 * 120.00326 * 359.97438 * 7 6 4 24 24 H 1.08999 * 109.46630 * 269.97351 * 1 2 3 25 25 H 1.08992 * 109.47454 * 29.97431 * 1 2 3 26 26 H 1.08996 * 109.46937 * 149.97950 * 1 2 3 27 27 H 1.07997 * 120.00455 * 0.02562 * 3 2 1 28 28 H 1.09001 * 109.47060 * 269.91029 * 5 4 3 29 29 H 1.08998 * 109.46941 * 29.90973 * 5 4 3 30 30 H 1.08998 * 109.47482 * 149.91122 * 5 4 3 31 31 H 1.08000 * 119.99728 * 180.34119 * 6 4 3 32 32 H 1.08993 * 109.47341 * 210.00461 * 8 7 6 33 33 H 1.09001 * 109.46864 * 330.00546 * 8 7 6 34 34 H 0.97000 * 119.99770 * 0.02562 * 11 9 8 35 35 H 1.09003 * 109.47200 * 300.00077 * 12 11 9 36 36 H 1.09001 * 109.47323 * 60.00059 * 12 11 9 37 37 H 1.08998 * 109.46716 * 299.99389 * 13 12 11 38 38 H 1.08996 * 109.47443 * 60.00011 * 13 12 11 39 39 H 1.08998 * 109.46699 * 299.99205 * 14 13 12 40 40 H 1.08996 * 109.47144 * 59.99633 * 14 13 12 41 41 H 0.97005 * 119.99961 * 179.97438 * 18 17 15 42 42 H 1.08001 * 120.00371 * 179.97438 * 23 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1981 1.1972 0.0000 4 6 3.5804 1.1973 -0.0005 5 6 4.3339 2.5025 0.0000 6 6 4.2717 0.0001 0.0008 7 6 3.5806 -1.1970 0.0012 8 6 4.3341 -2.5021 0.0021 9 6 4.5849 -2.9364 1.4233 10 8 4.1902 -2.2536 2.3446 11 7 5.2470 -4.0840 1.6704 12 6 5.4903 -4.5064 3.0518 13 6 6.2554 -5.8313 3.0528 14 6 6.5090 -6.2728 4.4957 15 6 7.2632 -7.5775 4.4966 16 1 7.5342 -8.0452 3.5616 17 6 7.6073 -8.1740 5.6911 18 7 8.2650 -9.3128 5.6919 19 14 7.1392 -7.3646 7.3082 20 1 5.8027 -7.8504 7.7363 21 1 8.1461 -7.7091 8.3438 22 1 7.0965 -5.8909 7.1300 23 6 2.1983 -1.1971 0.0008 24 1 -0.3632 -0.0005 1.0277 25 1 -0.3634 0.8901 -0.5134 26 1 -0.3633 -0.8898 -0.5141 27 1 1.6581 2.1325 0.0004 28 1 4.5166 2.8170 -1.0275 29 1 3.7443 3.2621 0.5132 30 1 5.2858 2.3723 0.5148 31 1 5.3517 0.0003 0.0060 32 1 3.7453 -3.2620 -0.5115 33 1 5.2867 -2.3719 -0.5114 34 1 5.5624 -4.6303 0.9335 35 1 6.0793 -3.7467 3.5657 36 1 4.5376 -4.6363 3.5653 37 1 5.6667 -6.5912 2.5389 38 1 7.2082 -5.7011 2.5396 39 1 7.0975 -5.5131 5.0099 40 1 5.5561 -6.4031 5.0085 41 1 8.5074 -9.7323 6.5322 42 1 1.6583 -2.1324 0.0007 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597149341.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:13:34 Heat of formation + Delta-G solvation = -46.910806 kcal Electronic energy + Delta-G solvation = -19922.125048 eV Core-core repulsion = 16865.617074 eV Total energy + Delta-G solvation = -3056.507974 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.16365 -39.01451 -35.55189 -33.68054 -33.63928 -33.28531 -31.47706 -28.90147 -27.45981 -26.85495 -26.57220 -23.01660 -21.31208 -20.90033 -20.63690 -19.66713 -17.05488 -16.65499 -16.46655 -16.13606 -15.64698 -15.26944 -14.46550 -14.25635 -14.13130 -14.08237 -13.42657 -13.41944 -13.14110 -13.11066 -12.75130 -12.70098 -12.58157 -12.06210 -11.94092 -11.74102 -11.63582 -11.17390 -11.12875 -11.08554 -10.89573 -10.20276 -9.97523 -9.78573 -9.58527 -9.23753 -8.84998 -8.71403 -8.65395 -8.56388 -6.07224 -4.05932 1.21333 1.26460 2.74589 3.27931 3.30828 3.38389 3.42853 3.71634 4.43779 4.44917 4.57575 4.61658 4.94906 4.97724 5.07127 5.10256 5.14745 5.26933 5.33338 5.35663 5.40026 5.40994 5.43005 5.58254 5.63818 5.65378 5.65988 5.99093 6.01319 6.04287 6.35836 6.40097 6.40387 6.44102 6.50369 6.69983 6.79076 6.90504 7.21982 7.35436 7.64303 7.76070 8.35512 8.49493 8.96546 9.55106 11.06002 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.031593 B = 0.002638 C = 0.002622 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 886.058543 B =10610.014788 C =10674.970075 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.084 4.084 3 C -0.123 4.123 4 C -0.084 4.084 5 C -0.113 4.113 6 C -0.111 4.111 7 C -0.054 4.054 8 C -0.104 4.104 9 C 0.508 3.492 10 O -0.536 6.536 11 N -0.728 5.728 12 C 0.114 3.886 13 C -0.113 4.113 14 C -0.011 4.011 15 C -0.522 4.522 16 H 0.072 0.928 17 C 0.066 3.934 18 N -0.903 5.903 19 Si 0.880 3.120 20 H -0.277 1.277 21 H -0.288 1.288 22 H -0.264 1.264 23 C -0.111 4.111 24 H 0.070 0.930 25 H 0.064 0.936 26 H 0.065 0.935 27 H 0.118 0.882 28 H 0.068 0.932 29 H 0.065 0.935 30 H 0.066 0.934 31 H 0.119 0.881 32 H 0.102 0.898 33 H 0.102 0.898 34 H 0.400 0.600 35 H 0.063 0.937 36 H 0.063 0.937 37 H 0.060 0.940 38 H 0.060 0.940 39 H 0.018 0.982 40 H 0.014 0.986 41 H 0.263 0.737 42 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.854 20.586 -15.907 28.589 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.084 4.084 3 C -0.141 4.141 4 C -0.084 4.084 5 C -0.170 4.170 6 C -0.129 4.129 7 C -0.055 4.055 8 C -0.144 4.144 9 C 0.294 3.706 10 O -0.412 6.412 11 N -0.379 5.379 12 C -0.009 4.009 13 C -0.151 4.151 14 C -0.049 4.049 15 C -0.560 4.560 16 H 0.090 0.910 17 C -0.135 4.135 18 N -0.542 5.542 19 Si 0.707 3.293 20 H -0.202 1.202 21 H -0.214 1.214 22 H -0.189 1.189 23 C -0.129 4.129 24 H 0.089 0.911 25 H 0.083 0.917 26 H 0.084 0.916 27 H 0.136 0.864 28 H 0.087 0.913 29 H 0.084 0.916 30 H 0.085 0.915 31 H 0.137 0.863 32 H 0.120 0.880 33 H 0.120 0.880 34 H 0.233 0.767 35 H 0.081 0.919 36 H 0.081 0.919 37 H 0.079 0.921 38 H 0.079 0.921 39 H 0.037 0.963 40 H 0.032 0.968 41 H 0.073 0.927 42 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -12.056 20.941 -15.097 28.492 hybrid contribution 0.050 -0.134 0.641 0.657 sum -12.005 20.807 -14.456 28.036 Atomic orbital electron populations 1.20777 0.91265 1.02542 1.02400 1.19832 0.95943 0.93046 0.99550 1.20850 0.93493 0.97392 1.02415 1.19834 0.93818 0.95170 0.99557 1.20778 1.00010 0.94080 1.02116 1.20827 0.99504 0.91450 1.01106 1.19238 0.93498 0.93577 0.99180 1.20702 1.02225 0.96210 0.95284 1.20487 0.78083 0.81026 0.91014 1.90726 1.50519 1.53695 1.46307 1.46178 1.58044 1.23756 1.09956 1.21636 1.00409 0.97541 0.81266 1.21702 0.98950 0.93415 1.01017 1.19505 0.96685 0.97232 0.91512 1.21097 1.35655 1.04759 0.94503 0.91007 1.25029 0.94557 0.94658 0.99247 1.69911 1.39865 1.17468 1.26944 0.86775 0.78399 0.80612 0.83510 1.20237 1.21356 1.18901 1.20822 0.93362 0.97586 1.01121 0.91149 0.91697 0.91582 0.86367 0.91292 0.91641 0.91504 0.86323 0.87981 0.87984 0.76659 0.91885 0.91885 0.92131 0.92097 0.96330 0.96763 0.92690 0.86327 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.88 10.01 36.01 0.36 -0.52 16 2 C -0.08 -0.88 5.88 -104.62 -0.62 -1.49 16 3 C -0.12 -1.26 9.36 -39.59 -0.37 -1.63 16 4 C -0.08 -0.88 5.88 -104.62 -0.62 -1.49 16 5 C -0.11 -0.88 10.01 36.01 0.36 -0.52 16 6 C -0.11 -1.25 9.36 -39.58 -0.37 -1.62 16 7 C -0.05 -0.63 4.37 -104.63 -0.46 -1.09 16 8 C -0.10 -1.03 5.83 -29.03 -0.17 -1.20 16 9 C 0.51 7.13 7.82 -10.99 -0.09 7.05 16 10 O -0.54 -9.92 16.03 5.55 0.09 -9.83 16 11 N -0.73 -9.74 5.56 -60.30 -0.33 -10.07 16 12 C 0.11 1.90 5.67 -4.05 -0.02 1.88 16 13 C -0.11 -2.10 5.27 -26.73 -0.14 -2.24 16 14 C -0.01 -0.27 4.04 -27.88 -0.11 -0.38 16 15 C -0.52 -14.72 9.66 -34.44 -0.33 -15.05 16 16 H 0.07 2.15 7.99 -52.49 -0.42 1.73 16 17 C 0.07 1.93 5.47 -17.82 -0.10 1.84 16 18 N -0.90 -27.77 13.96 55.43 0.77 -26.99 16 19 Si 0.88 21.82 27.47 -169.99 -4.67 17.15 16 20 H -0.28 -6.75 7.11 56.52 0.40 -6.34 16 21 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 22 H -0.26 -6.34 6.54 56.52 0.37 -5.97 16 23 C -0.11 -1.25 9.36 -39.59 -0.37 -1.62 16 24 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 25 H 0.06 0.41 8.08 -51.93 -0.42 -0.01 16 26 H 0.07 0.45 8.09 -51.93 -0.42 0.03 16 27 H 0.12 0.96 8.06 -52.49 -0.42 0.54 16 28 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 29 H 0.06 0.45 8.08 -51.93 -0.42 0.03 16 30 H 0.07 0.51 8.09 -51.93 -0.42 0.09 16 31 H 0.12 1.19 8.06 -52.49 -0.42 0.77 16 32 H 0.10 0.78 8.08 -51.93 -0.42 0.36 16 33 H 0.10 0.78 8.09 -51.93 -0.42 0.36 16 34 H 0.40 4.15 8.47 -40.82 -0.35 3.80 16 35 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 36 H 0.06 1.11 8.14 -51.93 -0.42 0.68 16 37 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 38 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 39 H 0.02 0.44 7.20 -51.93 -0.37 0.06 16 40 H 0.01 0.33 7.57 -51.93 -0.39 -0.06 16 41 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 42 H 0.12 1.19 8.06 -52.49 -0.42 0.77 16 LS Contribution 352.84 15.07 5.32 5.32 Total: -1.00 -34.06 352.84 -8.89 -42.95 By element: Atomic # 1 Polarization: 6.62 SS G_CDS: -7.02 Total: -0.40 kcal Atomic # 6 Polarization: -15.07 SS G_CDS: -3.04 Total: -18.11 kcal Atomic # 7 Polarization: -37.50 SS G_CDS: 0.44 Total: -37.07 kcal Atomic # 8 Polarization: -9.92 SS G_CDS: 0.09 Total: -9.83 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -4.67 Total: 17.15 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -34.06 -8.89 -42.95 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597149341.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.965 kcal (2) G-P(sol) polarization free energy of solvation -34.058 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.024 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.887 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.946 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.911 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds