Wall clock time and date at job start Mon Mar 30 2020 02:13:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38234 * 119.99503 * 2 1 4 4 C 1.38231 * 119.99892 * 180.02562 * 3 2 1 5 5 C 1.50706 * 120.00319 * 180.02562 * 4 3 2 6 6 C 1.38243 * 120.00070 * 359.90902 * 4 3 2 7 7 C 1.38235 * 119.99602 * 0.07188 * 6 4 3 8 8 C 1.50701 * 119.99808 * 179.97438 * 7 6 4 9 9 C 1.50701 * 109.47148 * 89.99755 * 8 7 6 10 10 O 1.21286 * 119.99909 * 0.02562 * 9 8 7 11 11 N 1.34774 * 120.00373 * 179.97438 * 9 8 7 12 12 C 1.46492 * 120.00345 * 180.02562 * 11 9 8 13 13 C 1.53001 * 109.47251 * 180.02562 * 12 11 9 14 14 C 1.53006 * 109.47057 * 180.02562 * 13 12 11 15 15 C 1.50696 * 109.46928 * 180.02562 * 14 13 12 16 16 H 1.08002 * 120.00181 * 359.97438 * 15 14 13 17 17 C 1.37882 * 119.99941 * 179.97438 * 15 14 13 18 18 N 1.31508 * 119.99848 * 179.97438 * 17 15 14 19 19 Si 1.86793 * 119.99885 * 359.97438 * 17 15 14 20 20 H 1.48505 * 109.47286 * 89.99833 * 19 17 15 21 21 H 1.48501 * 109.47036 * 210.00074 * 19 17 15 22 22 H 1.48506 * 109.47183 * 330.00049 * 19 17 15 23 23 C 1.38230 * 120.00326 * 359.97438 * 7 6 4 24 24 H 1.08999 * 109.46630 * 269.97351 * 1 2 3 25 25 H 1.08992 * 109.47454 * 29.97431 * 1 2 3 26 26 H 1.08996 * 109.46937 * 149.97950 * 1 2 3 27 27 H 1.07997 * 120.00455 * 0.02562 * 3 2 1 28 28 H 1.09001 * 109.47060 * 269.91029 * 5 4 3 29 29 H 1.08998 * 109.46941 * 29.90973 * 5 4 3 30 30 H 1.08998 * 109.47482 * 149.91122 * 5 4 3 31 31 H 1.08000 * 119.99728 * 180.34119 * 6 4 3 32 32 H 1.08993 * 109.47341 * 210.00461 * 8 7 6 33 33 H 1.09001 * 109.46864 * 330.00546 * 8 7 6 34 34 H 0.97000 * 119.99770 * 0.02562 * 11 9 8 35 35 H 1.09003 * 109.47200 * 300.00077 * 12 11 9 36 36 H 1.09001 * 109.47323 * 60.00059 * 12 11 9 37 37 H 1.08998 * 109.46716 * 299.99389 * 13 12 11 38 38 H 1.08996 * 109.47443 * 60.00011 * 13 12 11 39 39 H 1.08998 * 109.46699 * 299.99205 * 14 13 12 40 40 H 1.08996 * 109.47144 * 59.99633 * 14 13 12 41 41 H 0.97005 * 119.99961 * 179.97438 * 18 17 15 42 42 H 1.08001 * 120.00371 * 179.97438 * 23 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1981 1.1972 0.0000 4 6 3.5804 1.1973 -0.0005 5 6 4.3339 2.5025 0.0000 6 6 4.2717 0.0001 0.0008 7 6 3.5806 -1.1970 0.0012 8 6 4.3341 -2.5021 0.0021 9 6 4.5849 -2.9364 1.4233 10 8 4.1902 -2.2536 2.3446 11 7 5.2470 -4.0840 1.6704 12 6 5.4903 -4.5064 3.0518 13 6 6.2554 -5.8313 3.0528 14 6 6.5090 -6.2728 4.4957 15 6 7.2632 -7.5775 4.4966 16 1 7.5342 -8.0452 3.5616 17 6 7.6073 -8.1740 5.6911 18 7 8.2650 -9.3128 5.6919 19 14 7.1392 -7.3646 7.3082 20 1 5.8027 -7.8504 7.7363 21 1 8.1461 -7.7091 8.3438 22 1 7.0965 -5.8909 7.1300 23 6 2.1983 -1.1971 0.0008 24 1 -0.3632 -0.0005 1.0277 25 1 -0.3634 0.8901 -0.5134 26 1 -0.3633 -0.8898 -0.5141 27 1 1.6581 2.1325 0.0004 28 1 4.5166 2.8170 -1.0275 29 1 3.7443 3.2621 0.5132 30 1 5.2858 2.3723 0.5148 31 1 5.3517 0.0003 0.0060 32 1 3.7453 -3.2620 -0.5115 33 1 5.2867 -2.3719 -0.5114 34 1 5.5624 -4.6303 0.9335 35 1 6.0793 -3.7467 3.5657 36 1 4.5376 -4.6363 3.5653 37 1 5.6667 -6.5912 2.5389 38 1 7.2082 -5.7011 2.5396 39 1 7.0975 -5.5131 5.0099 40 1 5.5561 -6.4031 5.0085 41 1 8.5074 -9.7323 6.5322 42 1 1.6583 -2.1324 0.0007 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597149341.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:13:33 Heat of formation + Delta-G solvation = -67.475942 kcal Electronic energy + Delta-G solvation = -19923.016819 eV Core-core repulsion = 16865.617074 eV Total energy + Delta-G solvation = -3057.399745 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.10138 -39.97663 -37.00381 -35.13692 -34.46108 -34.36670 -33.25854 -29.98443 -28.52875 -27.72312 -27.55311 -24.66394 -22.32633 -22.18853 -21.61775 -20.82102 -18.97787 -17.92595 -17.28505 -17.03022 -16.86971 -16.44394 -16.19857 -15.41826 -15.17413 -14.98405 -14.78176 -14.50328 -13.99716 -13.91054 -13.87067 -13.78433 -13.72264 -13.33679 -13.15451 -12.74364 -12.70665 -12.51812 -12.35667 -11.97439 -11.86696 -11.84281 -11.77399 -11.60265 -11.33954 -10.90462 -10.77132 -10.07103 -9.50417 -9.41427 -8.30319 -6.34057 0.42273 0.48887 1.35821 1.37537 1.49277 1.66902 2.25240 2.35400 2.87573 3.05417 3.66637 3.87287 3.94957 4.00680 4.16320 4.19135 4.24362 4.38634 4.45253 4.49879 4.53940 4.62380 4.71140 4.71533 4.80341 4.84305 4.88012 4.92683 5.00629 5.03361 5.06853 5.28720 5.37035 5.40493 5.51144 5.54941 5.63091 5.64289 5.65661 5.73668 6.16662 6.26625 6.61221 6.74144 7.29631 7.30927 8.86053 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.031593 B = 0.002638 C = 0.002622 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 886.058543 B =10610.014788 C =10674.970075 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.095 4.095 3 C -0.135 4.135 4 C -0.095 4.095 5 C -0.111 4.111 6 C -0.131 4.131 7 C -0.071 4.071 8 C -0.094 4.094 9 C 0.508 3.492 10 O -0.584 6.584 11 N -0.718 5.718 12 C 0.127 3.873 13 C -0.099 4.099 14 C -0.013 4.013 15 C -0.530 4.530 16 H 0.039 0.961 17 C 0.005 3.995 18 N -0.950 5.950 19 Si 0.947 3.053 20 H -0.267 1.267 21 H -0.284 1.284 22 H -0.249 1.249 23 C -0.131 4.131 24 H 0.069 0.931 25 H 0.079 0.921 26 H 0.073 0.927 27 H 0.137 0.863 28 H 0.083 0.917 29 H 0.073 0.927 30 H 0.065 0.935 31 H 0.125 0.875 32 H 0.129 0.871 33 H 0.129 0.871 34 H 0.416 0.584 35 H 0.053 0.947 36 H 0.054 0.946 37 H 0.065 0.935 38 H 0.065 0.935 39 H 0.019 0.981 40 H 0.018 0.982 41 H 0.266 0.734 42 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.839 22.241 -16.520 30.535 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.095 4.095 3 C -0.153 4.153 4 C -0.095 4.095 5 C -0.168 4.168 6 C -0.149 4.149 7 C -0.072 4.072 8 C -0.134 4.134 9 C 0.296 3.704 10 O -0.464 6.464 11 N -0.370 5.370 12 C 0.003 3.997 13 C -0.137 4.137 14 C -0.051 4.051 15 C -0.568 4.568 16 H 0.057 0.943 17 C -0.192 4.192 18 N -0.590 5.590 19 Si 0.770 3.230 20 H -0.192 1.192 21 H -0.210 1.210 22 H -0.173 1.173 23 C -0.149 4.149 24 H 0.088 0.912 25 H 0.098 0.902 26 H 0.092 0.908 27 H 0.154 0.846 28 H 0.101 0.899 29 H 0.092 0.908 30 H 0.084 0.916 31 H 0.143 0.857 32 H 0.147 0.853 33 H 0.147 0.853 34 H 0.253 0.747 35 H 0.071 0.929 36 H 0.072 0.928 37 H 0.084 0.916 38 H 0.084 0.916 39 H 0.037 0.963 40 H 0.037 0.963 41 H 0.075 0.925 42 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -13.038 22.590 -15.757 30.472 hybrid contribution 0.369 -0.668 0.754 1.073 sum -12.669 21.921 -15.004 29.430 Atomic orbital electron populations 1.20813 0.89608 1.03729 1.02661 1.20212 0.97391 0.93011 0.98918 1.21164 0.93707 0.98191 1.02219 1.20214 0.94348 0.96055 0.98912 1.20813 0.99767 0.93071 1.03144 1.21076 1.00068 0.91938 1.01812 1.19496 0.93897 0.94326 0.99449 1.20731 1.03929 0.96177 0.92535 1.21182 0.76753 0.80176 0.92265 1.90707 1.52461 1.55094 1.48167 1.46004 1.57849 1.24016 1.09162 1.21256 0.99365 0.96028 0.83067 1.21475 0.99683 0.94550 0.98019 1.19473 0.95987 0.94822 0.94811 1.21464 1.35635 1.06444 0.93286 0.94302 1.25975 0.94609 0.95237 1.03393 1.70054 1.41591 1.19283 1.28110 0.85708 0.78359 0.80295 0.78603 1.19248 1.20968 1.17295 1.21076 0.93682 0.98328 1.01805 0.91222 0.90201 0.90780 0.84558 0.89875 0.90763 0.91565 0.85692 0.85293 0.85311 0.74667 0.92855 0.92771 0.91592 0.91608 0.96251 0.96347 0.92492 0.85659 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.58 10.01 71.24 0.71 -0.86 16 2 C -0.10 -1.90 5.88 -19.87 -0.12 -2.02 16 3 C -0.13 -2.59 9.36 22.27 0.21 -2.38 16 4 C -0.10 -1.90 5.88 -19.86 -0.12 -2.02 16 5 C -0.11 -1.57 10.01 71.24 0.71 -0.86 16 6 C -0.13 -2.84 9.36 22.27 0.21 -2.63 16 7 C -0.07 -1.56 4.37 -19.87 -0.09 -1.65 16 8 C -0.09 -1.65 5.83 29.10 0.17 -1.48 16 9 C 0.51 13.46 7.82 87.66 0.69 14.15 16 10 O -0.58 -21.32 16.03 -3.05 -0.05 -21.37 16 11 N -0.72 -17.80 5.56 -463.07 -2.57 -20.37 16 12 C 0.13 4.04 5.67 86.38 0.49 4.53 16 13 C -0.10 -3.56 5.27 30.60 0.16 -3.40 16 14 C -0.01 -0.59 4.04 29.85 0.12 -0.47 16 15 C -0.53 -30.13 9.66 25.60 0.25 -29.88 16 16 H 0.04 2.39 7.99 -2.91 -0.02 2.37 16 17 C 0.00 0.28 5.47 84.66 0.46 0.74 16 18 N -0.95 -59.37 13.96 21.45 0.30 -59.07 16 19 Si 0.95 44.62 27.47 68.60 1.88 46.50 16 20 H -0.27 -12.14 7.11 99.48 0.71 -11.44 16 21 H -0.28 -13.13 7.11 99.48 0.71 -12.42 16 22 H -0.25 -11.04 6.54 99.48 0.65 -10.39 16 23 C -0.13 -2.84 9.36 22.27 0.21 -2.63 16 24 H 0.07 0.99 8.14 -2.39 -0.02 0.98 16 25 H 0.08 0.86 8.08 -2.39 -0.02 0.84 16 26 H 0.07 0.91 8.09 -2.39 -0.02 0.89 16 27 H 0.14 1.98 8.06 -2.91 -0.02 1.96 16 28 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 29 H 0.07 0.90 8.08 -2.39 -0.02 0.88 16 30 H 0.07 0.93 8.09 -2.39 -0.02 0.91 16 31 H 0.13 2.39 8.06 -2.91 -0.02 2.37 16 32 H 0.13 1.56 8.08 -2.39 -0.02 1.54 16 33 H 0.13 1.56 8.09 -2.39 -0.02 1.54 16 34 H 0.42 7.54 8.47 -92.71 -0.79 6.75 16 35 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 36 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 37 H 0.07 2.29 8.14 -2.39 -0.02 2.27 16 38 H 0.07 2.29 8.14 -2.39 -0.02 2.27 16 39 H 0.02 0.88 7.20 -2.39 -0.02 0.86 16 40 H 0.02 0.83 7.57 -2.39 -0.02 0.81 16 41 H 0.27 15.54 8.31 -92.70 -0.77 14.77 16 42 H 0.13 2.39 8.06 -2.91 -0.02 2.36 16 Total: -1.00 -74.30 352.84 3.78 -70.53 By element: Atomic # 1 Polarization: 14.50 SS G_CDS: 0.15 Total: 14.65 kcal Atomic # 6 Polarization: -34.93 SS G_CDS: 4.07 Total: -30.86 kcal Atomic # 7 Polarization: -77.17 SS G_CDS: -2.27 Total: -79.44 kcal Atomic # 8 Polarization: -21.32 SS G_CDS: -0.05 Total: -21.37 kcal Atomic # 14 Polarization: 44.62 SS G_CDS: 1.88 Total: 46.50 kcal Total: -74.30 3.78 -70.53 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597149341.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.049 kcal (2) G-P(sol) polarization free energy of solvation -74.304 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.254 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.779 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.525 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.476 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds