Wall clock time and date at job start Mon Mar 30 2020 02:54:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38133 * 120.03635 * 2 1 4 4 C 1.38256 * 120.06881 * 180.28021 * 3 2 1 5 5 C 1.38310 * 120.14374 * 359.71827 * 4 3 2 6 6 C 1.38089 * 120.06953 * 359.97438 * 5 4 3 7 7 C 1.38850 * 120.03430 * 179.70262 * 2 1 3 8 8 N 1.39929 * 120.07406 * 359.97438 * 7 2 1 9 9 C 1.46499 * 120.00104 * 269.73140 * 8 7 2 10 10 C 1.34779 * 119.99683 * 89.72468 * 8 7 2 11 11 O 1.21287 * 120.00178 * 0.02562 * 10 8 7 12 12 C 1.50703 * 119.99541 * 180.02562 * 10 8 7 13 13 C 1.53000 * 109.46653 * 179.97438 * 12 10 8 14 14 C 1.52999 * 109.46975 * 179.97438 * 13 12 10 15 15 C 1.52998 * 109.47328 * 180.02562 * 14 13 12 16 16 C 1.50708 * 109.47326 * 180.02562 * 15 14 13 17 17 H 1.07994 * 119.99794 * 0.02562 * 16 15 14 18 18 C 1.37877 * 120.00008 * 180.02562 * 16 15 14 19 19 N 1.31520 * 120.00027 * 359.97438 * 18 16 15 20 20 Si 1.86797 * 119.99802 * 179.97438 * 18 16 15 21 21 H 1.48507 * 109.46776 * 60.00220 * 20 18 16 22 22 H 1.48506 * 109.47019 * 179.97438 * 20 18 16 23 23 H 1.48496 * 109.47341 * 299.99792 * 20 18 16 24 24 H 1.09007 * 109.46954 * 270.29985 * 1 2 3 25 25 H 1.08992 * 109.47254 * 30.29871 * 1 2 3 26 26 H 1.08998 * 109.47296 * 150.30258 * 1 2 3 27 27 H 1.07997 * 119.96438 * 359.97438 * 3 2 1 28 28 H 1.08006 * 119.93104 * 179.74589 * 4 3 2 29 29 H 1.08005 * 119.96349 * 180.02562 * 5 4 3 30 30 H 1.08001 * 120.03800 * 179.97438 * 6 5 4 31 31 H 1.09002 * 109.47391 * 89.99449 * 9 8 7 32 32 H 1.09001 * 109.46813 * 329.99506 * 9 8 7 33 33 H 1.09004 * 109.47041 * 209.99633 * 9 8 7 34 34 H 1.08996 * 109.47057 * 299.99739 * 12 10 8 35 35 H 1.08996 * 109.47084 * 60.00703 * 12 10 8 36 36 H 1.08994 * 109.48028 * 300.00003 * 13 12 10 37 37 H 1.09007 * 109.47101 * 60.00827 * 13 12 10 38 38 H 1.08998 * 109.47634 * 300.00696 * 14 13 12 39 39 H 1.08999 * 109.47136 * 60.00615 * 14 13 12 40 40 H 1.09007 * 109.47491 * 300.00297 * 15 14 13 41 41 H 1.09000 * 109.47122 * 60.00234 * 15 14 13 42 42 H 0.96998 * 119.99870 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1984 1.1958 0.0000 4 6 3.5810 1.1966 -0.0059 5 6 4.2762 0.0010 -0.0058 6 6 3.5909 -1.1979 0.0006 7 6 2.2020 -1.2020 0.0062 8 7 1.5046 -2.4152 0.0131 9 6 1.1452 -3.0463 1.2853 10 6 1.1635 -3.0029 -1.1509 11 8 1.4613 -2.4805 -2.2042 12 6 0.4119 -4.3091 -1.1435 13 6 0.1508 -4.7553 -2.5835 14 6 -0.6117 -6.0817 -2.5760 15 6 -0.8723 -6.5283 -4.0160 16 6 -1.6239 -7.8346 -4.0087 17 1 -1.8894 -8.2995 -3.0708 18 6 -1.9724 -8.4361 -5.1994 19 7 -1.6494 -7.8697 -6.3416 20 14 -2.9033 -10.0555 -5.1902 21 1 -4.1983 -9.8780 -4.4854 22 1 -3.1564 -10.4889 -6.5879 23 1 -2.0959 -11.0867 -4.4903 24 1 -0.3633 0.0054 1.0277 25 1 -0.3633 0.8872 -0.5184 26 1 -0.3634 -0.8927 -0.5091 27 1 1.6585 2.1311 -0.0004 28 1 4.1193 2.1329 -0.0100 29 1 5.3562 0.0050 -0.0100 30 1 4.1343 -2.1312 0.0001 31 1 0.1652 -2.6906 1.6034 32 1 1.8877 -2.7894 2.0409 33 1 1.1154 -4.1285 1.1584 34 1 1.0044 -5.0662 -0.6299 35 1 -0.5384 -4.1785 -0.6260 36 1 -0.4418 -3.9981 -3.0968 37 1 1.1010 -4.8858 -3.1014 38 1 -0.0188 -6.8388 -2.0629 39 1 -1.5618 -5.9518 -2.0581 40 1 -1.4651 -5.7713 -4.5296 41 1 0.0781 -6.6584 -4.5337 42 1 -1.8943 -8.2930 -7.1792 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000598896087.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:54:40 Heat of formation + Delta-G solvation = -30.343846 kcal Electronic energy + Delta-G solvation = -20517.036210 eV Core-core repulsion = 17461.246633 eV Total energy + Delta-G solvation = -3055.789576 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.71930 -38.72935 -35.63284 -34.88945 -32.89980 -32.61652 -30.79764 -29.41117 -27.40882 -26.67168 -25.60044 -23.26426 -22.11821 -21.37979 -20.00951 -19.29741 -17.34251 -16.63837 -16.43186 -16.14262 -15.88649 -15.20523 -14.57043 -14.38566 -14.04439 -13.86775 -13.54731 -13.34551 -13.17494 -12.79758 -12.54556 -12.51892 -12.24529 -12.13588 -11.65770 -11.61466 -11.51922 -11.39606 -10.95941 -10.52870 -10.51577 -10.39258 -9.82629 -9.59824 -9.23757 -9.05709 -8.99770 -8.97502 -8.79451 -8.28955 -5.93794 -3.96471 1.05116 1.16426 2.65443 2.83767 3.36090 3.40456 3.42625 3.48369 4.49698 4.63369 4.64596 4.72380 4.81994 4.86864 5.05551 5.11044 5.26653 5.29682 5.32358 5.37566 5.41256 5.42300 5.44112 5.51487 5.67407 5.83549 5.96089 6.12665 6.14537 6.26242 6.29530 6.37034 6.42576 6.55241 6.84706 6.89562 7.01673 7.17981 7.23892 7.75253 7.91562 8.07600 8.21684 8.49129 9.11089 9.67031 11.17531 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.039285 B = 0.002786 C = 0.002758 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 712.564743 B =10049.016765 C =10149.641732 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.076 4.076 3 C -0.116 4.116 4 C -0.115 4.115 5 C -0.120 4.120 6 C -0.107 4.107 7 C 0.141 3.859 8 N -0.587 5.587 9 C 0.081 3.919 10 C 0.514 3.486 11 O -0.520 6.520 12 C -0.135 4.135 13 C -0.104 4.104 14 C -0.109 4.109 15 C 0.020 3.980 16 C -0.521 4.521 17 H 0.054 0.946 18 C 0.055 3.945 19 N -0.896 5.896 20 Si 0.892 3.108 21 H -0.277 1.277 22 H -0.288 1.288 23 H -0.277 1.277 24 H 0.070 0.930 25 H 0.067 0.933 26 H 0.066 0.934 27 H 0.125 0.875 28 H 0.123 0.877 29 H 0.125 0.875 30 H 0.123 0.877 31 H 0.059 0.941 32 H 0.070 0.930 33 H 0.081 0.919 34 H 0.092 0.908 35 H 0.092 0.908 36 H 0.063 0.937 37 H 0.063 0.937 38 H 0.047 0.953 39 H 0.047 0.953 40 H 0.016 0.984 41 H 0.016 0.984 42 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.779 16.985 19.168 27.073 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.078 4.078 3 C -0.135 4.135 4 C -0.133 4.133 5 C -0.139 4.139 6 C -0.126 4.126 7 C 0.051 3.949 8 N -0.319 5.319 9 C -0.061 4.061 10 C 0.304 3.696 11 O -0.394 6.394 12 C -0.175 4.175 13 C -0.142 4.142 14 C -0.147 4.147 15 C -0.017 4.017 16 C -0.559 4.559 17 H 0.072 0.928 18 C -0.146 4.146 19 N -0.535 5.535 20 Si 0.720 3.280 21 H -0.203 1.203 22 H -0.213 1.213 23 H -0.203 1.203 24 H 0.088 0.912 25 H 0.086 0.914 26 H 0.085 0.915 27 H 0.143 0.857 28 H 0.141 0.859 29 H 0.143 0.857 30 H 0.141 0.859 31 H 0.077 0.923 32 H 0.089 0.911 33 H 0.099 0.901 34 H 0.110 0.890 35 H 0.110 0.890 36 H 0.082 0.918 37 H 0.082 0.918 38 H 0.065 0.935 39 H 0.065 0.935 40 H 0.034 0.966 41 H 0.034 0.966 42 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 8.899 17.202 18.383 26.702 hybrid contribution -0.444 -0.921 0.015 1.022 sum 8.454 16.281 18.398 25.981 Atomic orbital electron populations 1.20724 0.90890 1.03199 1.02047 1.20152 0.96522 0.92403 0.98688 1.20941 0.94256 0.97112 1.01189 1.21171 0.94230 0.98127 0.99761 1.21017 0.99918 0.92029 1.00918 1.21330 0.93235 0.98677 0.99402 1.17390 0.90303 0.85040 1.02148 1.45501 1.57849 1.21327 1.07266 1.21869 1.00879 0.98778 0.84569 1.21273 0.78895 0.86927 0.82475 1.90731 1.53296 1.64929 1.30415 1.21834 1.00390 0.93202 1.02049 1.21478 1.01586 0.98739 0.92426 1.21642 0.97995 0.93798 1.01267 1.19092 0.96813 0.95837 0.89956 1.21247 1.35961 1.06552 0.92161 0.92806 1.25043 0.96185 0.97632 0.95704 1.69969 1.47028 1.39248 0.97237 0.86671 0.80375 0.84099 0.76904 1.20287 1.21321 1.20285 0.91173 0.91364 0.91458 0.85749 0.85868 0.85745 0.85909 0.92275 0.91101 0.90061 0.88979 0.89009 0.91785 0.91791 0.93471 0.93460 0.96602 0.96599 0.92985 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.12 9.77 36.01 0.35 -0.77 16 2 C -0.08 -0.87 5.90 -104.43 -0.62 -1.48 16 3 C -0.12 -1.13 9.70 -39.61 -0.38 -1.51 16 4 C -0.11 -1.03 10.04 -39.55 -0.40 -1.43 16 5 C -0.12 -1.15 10.04 -39.61 -0.40 -1.55 16 6 C -0.11 -1.21 9.97 -39.39 -0.39 -1.60 16 7 C 0.14 1.73 4.44 -83.69 -0.37 1.36 16 8 N -0.59 -6.92 2.05 -120.82 -0.25 -7.17 16 9 C 0.08 0.63 10.23 59.85 0.61 1.24 16 10 C 0.51 7.68 6.96 -10.98 -0.08 7.61 16 11 O -0.52 -10.09 15.95 5.55 0.09 -10.00 16 12 C -0.13 -1.84 4.25 -27.88 -0.12 -1.96 16 13 C -0.10 -1.90 4.50 -26.73 -0.12 -2.02 16 14 C -0.11 -2.27 5.15 -26.73 -0.14 -2.40 16 15 C 0.02 0.54 4.97 -27.88 -0.14 0.40 16 16 C -0.52 -15.10 9.11 -34.44 -0.31 -15.41 16 17 H 0.05 1.49 7.74 -52.49 -0.41 1.09 16 18 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 19 N -0.90 -27.72 13.29 55.43 0.74 -26.99 16 20 Si 0.89 22.00 29.54 -169.99 -5.02 16.97 16 21 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 22 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 23 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 24 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 25 H 0.07 0.61 8.09 -51.93 -0.42 0.19 16 26 H 0.07 0.80 6.89 -51.93 -0.36 0.44 16 27 H 0.12 0.93 8.06 -52.49 -0.42 0.51 16 28 H 0.12 0.79 8.06 -52.48 -0.42 0.37 16 29 H 0.12 0.90 8.06 -52.48 -0.42 0.47 16 30 H 0.12 1.29 8.06 -52.49 -0.42 0.87 16 31 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 32 H 0.07 0.46 8.05 -51.93 -0.42 0.04 16 33 H 0.08 0.54 6.44 -51.93 -0.33 0.20 16 34 H 0.09 1.07 7.40 -51.93 -0.38 0.68 16 35 H 0.09 1.07 8.11 -51.93 -0.42 0.65 16 36 H 0.06 1.25 8.10 -51.93 -0.42 0.83 16 37 H 0.06 1.25 8.10 -51.93 -0.42 0.83 16 38 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 39 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 40 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 41 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 42 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 LS Contribution 350.95 15.07 5.29 5.29 Total: -1.00 -34.76 350.95 -8.70 -43.46 By element: Atomic # 1 Polarization: 3.38 SS G_CDS: -6.95 Total: -3.56 kcal Atomic # 6 Polarization: -15.41 SS G_CDS: -2.60 Total: -18.00 kcal Atomic # 7 Polarization: -34.64 SS G_CDS: 0.49 Total: -34.16 kcal Atomic # 8 Polarization: -10.09 SS G_CDS: 0.09 Total: -10.00 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -5.02 Total: 16.97 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -34.76 -8.70 -43.46 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598896087.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.116 kcal (2) G-P(sol) polarization free energy of solvation -34.762 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.646 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.698 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.460 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.344 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds