Wall clock time and date at job start Mon Mar 30 2020 02:54:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38133 * 120.03635 * 2 1 4 4 C 1.38256 * 120.06881 * 180.28021 * 3 2 1 5 5 C 1.38310 * 120.14374 * 359.71827 * 4 3 2 6 6 C 1.38089 * 120.06953 * 359.97438 * 5 4 3 7 7 C 1.38850 * 120.03430 * 179.70262 * 2 1 3 8 8 N 1.39929 * 120.07406 * 359.97438 * 7 2 1 9 9 C 1.46499 * 120.00104 * 269.73140 * 8 7 2 10 10 C 1.34779 * 119.99683 * 89.72468 * 8 7 2 11 11 O 1.21287 * 120.00178 * 0.02562 * 10 8 7 12 12 C 1.50703 * 119.99541 * 180.02562 * 10 8 7 13 13 C 1.53000 * 109.46653 * 179.97438 * 12 10 8 14 14 C 1.52999 * 109.46975 * 179.97438 * 13 12 10 15 15 C 1.52998 * 109.47328 * 180.02562 * 14 13 12 16 16 C 1.50708 * 109.47326 * 180.02562 * 15 14 13 17 17 H 1.07994 * 119.99794 * 0.02562 * 16 15 14 18 18 C 1.37877 * 120.00008 * 180.02562 * 16 15 14 19 19 N 1.31520 * 120.00027 * 359.97438 * 18 16 15 20 20 Si 1.86797 * 119.99802 * 179.97438 * 18 16 15 21 21 H 1.48507 * 109.46776 * 60.00220 * 20 18 16 22 22 H 1.48506 * 109.47019 * 179.97438 * 20 18 16 23 23 H 1.48496 * 109.47341 * 299.99792 * 20 18 16 24 24 H 1.09007 * 109.46954 * 270.29985 * 1 2 3 25 25 H 1.08992 * 109.47254 * 30.29871 * 1 2 3 26 26 H 1.08998 * 109.47296 * 150.30258 * 1 2 3 27 27 H 1.07997 * 119.96438 * 359.97438 * 3 2 1 28 28 H 1.08006 * 119.93104 * 179.74589 * 4 3 2 29 29 H 1.08005 * 119.96349 * 180.02562 * 5 4 3 30 30 H 1.08001 * 120.03800 * 179.97438 * 6 5 4 31 31 H 1.09002 * 109.47391 * 89.99449 * 9 8 7 32 32 H 1.09001 * 109.46813 * 329.99506 * 9 8 7 33 33 H 1.09004 * 109.47041 * 209.99633 * 9 8 7 34 34 H 1.08996 * 109.47057 * 299.99739 * 12 10 8 35 35 H 1.08996 * 109.47084 * 60.00703 * 12 10 8 36 36 H 1.08994 * 109.48028 * 300.00003 * 13 12 10 37 37 H 1.09007 * 109.47101 * 60.00827 * 13 12 10 38 38 H 1.08998 * 109.47634 * 300.00696 * 14 13 12 39 39 H 1.08999 * 109.47136 * 60.00615 * 14 13 12 40 40 H 1.09007 * 109.47491 * 300.00297 * 15 14 13 41 41 H 1.09000 * 109.47122 * 60.00234 * 15 14 13 42 42 H 0.96998 * 119.99870 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1984 1.1958 0.0000 4 6 3.5810 1.1966 -0.0059 5 6 4.2762 0.0010 -0.0058 6 6 3.5909 -1.1979 0.0006 7 6 2.2020 -1.2020 0.0062 8 7 1.5046 -2.4152 0.0131 9 6 1.1452 -3.0463 1.2853 10 6 1.1635 -3.0029 -1.1509 11 8 1.4613 -2.4805 -2.2042 12 6 0.4119 -4.3091 -1.1435 13 6 0.1508 -4.7553 -2.5835 14 6 -0.6117 -6.0817 -2.5760 15 6 -0.8723 -6.5283 -4.0160 16 6 -1.6239 -7.8346 -4.0087 17 1 -1.8894 -8.2995 -3.0708 18 6 -1.9724 -8.4361 -5.1994 19 7 -1.6494 -7.8697 -6.3416 20 14 -2.9033 -10.0555 -5.1902 21 1 -4.1983 -9.8780 -4.4854 22 1 -3.1564 -10.4889 -6.5879 23 1 -2.0959 -11.0867 -4.4903 24 1 -0.3633 0.0054 1.0277 25 1 -0.3633 0.8872 -0.5184 26 1 -0.3634 -0.8927 -0.5091 27 1 1.6585 2.1311 -0.0004 28 1 4.1193 2.1329 -0.0100 29 1 5.3562 0.0050 -0.0100 30 1 4.1343 -2.1312 0.0001 31 1 0.1652 -2.6906 1.6034 32 1 1.8877 -2.7894 2.0409 33 1 1.1154 -4.1285 1.1584 34 1 1.0044 -5.0662 -0.6299 35 1 -0.5384 -4.1785 -0.6260 36 1 -0.4418 -3.9981 -3.0968 37 1 1.1010 -4.8858 -3.1014 38 1 -0.0188 -6.8388 -2.0629 39 1 -1.5618 -5.9518 -2.0581 40 1 -1.4651 -5.7713 -4.5296 41 1 0.0781 -6.6584 -4.5337 42 1 -1.8943 -8.2930 -7.1792 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000598896087.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:54:39 Heat of formation + Delta-G solvation = -49.403069 kcal Electronic energy + Delta-G solvation = -20517.862680 eV Core-core repulsion = 17461.246633 eV Total energy + Delta-G solvation = -3056.616046 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.66650 -39.67806 -36.75119 -36.47201 -34.63343 -33.63816 -31.99705 -30.78639 -28.17162 -27.80155 -27.03098 -24.69944 -23.22982 -22.40586 -21.69545 -20.29204 -18.47188 -18.21731 -17.63467 -17.39230 -16.68670 -16.48565 -16.38359 -15.38949 -15.31158 -14.70891 -14.55466 -14.46646 -14.12172 -14.08147 -13.67866 -13.60342 -13.46518 -13.29100 -13.16635 -12.90009 -12.78956 -12.37912 -12.30869 -12.18785 -12.15571 -12.09851 -11.38626 -11.34824 -11.17190 -10.84528 -10.54293 -9.91007 -9.81488 -9.58270 -8.18351 -6.30826 0.27104 0.39654 1.40466 1.44712 1.52518 1.53984 1.94151 2.42291 2.72880 3.14257 3.64924 3.90016 3.90858 3.99858 4.09217 4.14714 4.22185 4.35657 4.50618 4.57745 4.61592 4.62975 4.68490 4.71711 4.75653 4.77551 4.85267 4.91227 4.95074 5.16558 5.20133 5.32002 5.35657 5.39671 5.52635 5.56056 5.57991 5.65248 5.77624 5.87893 6.08830 6.24032 6.25530 6.87604 7.15239 7.38869 8.93841 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.039285 B = 0.002786 C = 0.002758 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 712.564743 B =10049.016765 C =10149.641732 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.096 4.096 3 C -0.122 4.122 4 C -0.115 4.115 5 C -0.124 4.124 6 C -0.126 4.126 7 C 0.113 3.887 8 N -0.576 5.576 9 C 0.072 3.928 10 C 0.512 3.488 11 O -0.579 6.579 12 C -0.123 4.123 13 C -0.096 4.096 14 C -0.094 4.094 15 C 0.019 3.981 16 C -0.542 4.542 17 H 0.067 0.933 18 C -0.007 4.007 19 N -0.939 5.939 20 Si 0.970 3.030 21 H -0.264 1.264 22 H -0.286 1.286 23 H -0.264 1.264 24 H 0.090 0.910 25 H 0.074 0.926 26 H 0.044 0.956 27 H 0.146 0.854 28 H 0.152 0.848 29 H 0.147 0.853 30 H 0.122 0.878 31 H 0.074 0.926 32 H 0.084 0.916 33 H 0.096 0.904 34 H 0.122 0.878 35 H 0.120 0.880 36 H 0.041 0.959 37 H 0.041 0.959 38 H 0.062 0.938 39 H 0.062 0.938 40 H -0.017 1.017 41 H -0.017 1.017 42 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.497 16.790 21.892 28.868 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.098 4.098 3 C -0.140 4.140 4 C -0.133 4.133 5 C -0.143 4.143 6 C -0.145 4.145 7 C 0.023 3.977 8 N -0.306 5.306 9 C -0.069 4.069 10 C 0.303 3.697 11 O -0.458 6.458 12 C -0.162 4.162 13 C -0.134 4.134 14 C -0.131 4.131 15 C -0.018 4.018 16 C -0.580 4.580 17 H 0.086 0.914 18 C -0.204 4.204 19 N -0.579 5.579 20 Si 0.794 3.206 21 H -0.188 1.188 22 H -0.211 1.211 23 H -0.188 1.188 24 H 0.108 0.892 25 H 0.093 0.907 26 H 0.063 0.937 27 H 0.164 0.836 28 H 0.170 0.830 29 H 0.165 0.835 30 H 0.140 0.860 31 H 0.093 0.907 32 H 0.103 0.897 33 H 0.115 0.885 34 H 0.140 0.860 35 H 0.138 0.862 36 H 0.060 0.940 37 H 0.060 0.940 38 H 0.081 0.919 39 H 0.081 0.919 40 H 0.002 0.998 41 H 0.002 0.998 42 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 8.619 17.010 21.183 28.502 hybrid contribution -0.300 -0.768 -0.820 1.163 sum 8.318 16.243 20.363 27.344 Atomic orbital electron populations 1.20709 0.90342 1.02367 1.03058 1.20410 0.97238 0.92806 0.99303 1.21276 0.94893 0.97428 1.00437 1.21558 0.94200 0.99128 0.98369 1.21348 1.01180 0.91686 1.00048 1.21490 0.93179 0.99549 1.00305 1.17679 0.90937 0.85459 1.03605 1.45484 1.56475 1.21052 1.07623 1.22186 1.02139 0.99538 0.82990 1.21441 0.78569 0.87120 0.82599 1.90704 1.55928 1.66485 1.32642 1.21716 1.02264 0.93344 0.98924 1.21258 0.99603 0.96977 0.95560 1.21433 0.99383 0.95171 0.97143 1.19052 0.94438 0.94885 0.93443 1.21731 1.36071 1.07299 0.92905 0.91442 1.26110 0.97160 1.01999 0.95177 1.70134 1.48390 1.41331 0.98083 0.85429 0.79205 0.78832 0.77141 1.18841 1.21128 1.18844 0.89187 0.90673 0.93736 0.83610 0.83000 0.83537 0.85991 0.90707 0.89714 0.88499 0.86046 0.86151 0.94010 0.94039 0.91902 0.91887 0.99819 0.99829 0.92855 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.08 9.77 71.24 0.70 -1.39 16 2 C -0.10 -2.12 5.90 -19.74 -0.12 -2.23 16 3 C -0.12 -2.18 9.70 22.25 0.22 -1.96 16 4 C -0.11 -1.83 10.04 22.29 0.22 -1.61 16 5 C -0.12 -2.21 10.04 22.25 0.22 -1.99 16 6 C -0.13 -2.80 9.97 22.39 0.22 -2.58 16 7 C 0.11 2.72 4.44 38.15 0.17 2.89 16 8 N -0.58 -13.10 2.05 -654.54 -1.34 -14.45 16 9 C 0.07 0.94 10.23 127.77 1.31 2.25 16 10 C 0.51 15.29 6.96 87.66 0.61 15.90 16 11 O -0.58 -23.50 15.95 -3.05 -0.05 -23.54 16 12 C -0.12 -3.18 4.25 29.85 0.13 -3.06 16 13 C -0.10 -3.56 4.50 30.59 0.14 -3.42 16 14 C -0.09 -3.86 5.15 30.59 0.16 -3.70 16 15 C 0.02 1.05 4.97 29.85 0.15 1.20 16 16 C -0.54 -31.62 9.11 25.60 0.23 -31.38 16 17 H 0.07 3.66 7.74 -2.91 -0.02 3.64 16 18 C -0.01 -0.44 5.46 84.65 0.46 0.03 16 19 N -0.94 -59.66 13.29 21.45 0.28 -59.38 16 20 Si 0.97 44.95 29.54 68.60 2.03 46.98 16 21 H -0.26 -11.58 7.11 99.48 0.71 -10.88 16 22 H -0.29 -13.05 7.11 99.48 0.71 -12.34 16 23 H -0.26 -11.59 7.11 99.48 0.71 -10.88 16 24 H 0.09 1.30 8.14 -2.38 -0.02 1.28 16 25 H 0.07 1.29 8.09 -2.39 -0.02 1.28 16 26 H 0.04 1.05 6.89 -2.39 -0.02 1.04 16 27 H 0.15 1.86 8.06 -2.91 -0.02 1.84 16 28 H 0.15 1.48 8.06 -2.91 -0.02 1.46 16 29 H 0.15 1.83 8.06 -2.91 -0.02 1.81 16 30 H 0.12 2.58 8.06 -2.91 -0.02 2.56 16 31 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 32 H 0.08 0.90 8.05 -2.39 -0.02 0.88 16 33 H 0.10 0.96 6.44 -2.38 -0.02 0.95 16 34 H 0.12 2.45 7.40 -2.39 -0.02 2.44 16 35 H 0.12 2.46 8.11 -2.39 -0.02 2.44 16 36 H 0.04 1.71 8.10 -2.39 -0.02 1.69 16 37 H 0.04 1.70 8.10 -2.38 -0.02 1.68 16 38 H 0.06 2.39 8.14 -2.39 -0.02 2.37 16 39 H 0.06 2.40 8.14 -2.39 -0.02 2.38 16 40 H -0.02 -1.01 8.14 -2.38 -0.02 -1.03 16 41 H -0.02 -1.02 8.14 -2.39 -0.02 -1.04 16 42 H 0.26 15.66 8.31 -92.71 -0.77 14.89 16 Total: -1.00 -78.95 350.95 6.71 -72.24 By element: Atomic # 1 Polarization: 8.23 SS G_CDS: 0.97 Total: 9.20 kcal Atomic # 6 Polarization: -35.87 SS G_CDS: 4.82 Total: -31.05 kcal Atomic # 7 Polarization: -72.76 SS G_CDS: -1.06 Total: -73.82 kcal Atomic # 8 Polarization: -23.50 SS G_CDS: -0.05 Total: -23.54 kcal Atomic # 14 Polarization: 44.95 SS G_CDS: 2.03 Total: 46.98 kcal Total: -78.95 6.71 -72.24 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598896087.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.837 kcal (2) G-P(sol) polarization free energy of solvation -78.952 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.115 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.711 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.240 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.403 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds