Wall clock time and date at job start Mon Mar 30 2020 02:02:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38251 * 120.00020 * 2 1 4 4 C 1.38216 * 120.00452 * 179.97438 * 3 2 1 5 5 C 1.38260 * 119.99407 * 0.02562 * 4 3 2 6 6 C 1.38210 * 120.00052 * 359.96186 * 5 4 3 7 7 C 1.38218 * 119.99968 * 179.72146 * 2 1 3 8 8 C 1.50695 * 119.99818 * 0.02562 * 7 2 1 9 9 C 1.52999 * 109.47313 * 84.99738 * 8 7 2 10 10 H 1.08995 * 109.47165 * 304.99824 * 9 8 7 11 11 C 1.53002 * 109.46977 * 64.99753 * 9 8 7 12 12 C 1.50707 * 109.47105 * 184.99600 * 9 8 7 13 13 O 1.21278 * 119.99663 * 0.02562 * 12 9 8 14 14 N 1.34772 * 119.99942 * 180.02562 * 12 9 8 15 15 C 1.46502 * 119.99884 * 0.02562 * 14 12 9 16 16 C 1.46493 * 120.00148 * 180.02562 * 14 12 9 17 17 C 1.50698 * 109.47444 * 89.99698 * 16 14 12 18 18 H 1.08009 * 119.99730 * 0.02562 * 17 16 14 19 19 C 1.37873 * 120.00541 * 180.02562 * 17 16 14 20 20 N 1.31513 * 120.00341 * 180.02562 * 19 17 16 21 21 Si 1.86799 * 119.99905 * 0.02562 * 19 17 16 22 22 H 1.48505 * 109.47229 * 89.99974 * 21 19 17 23 23 H 1.48498 * 109.47393 * 210.00026 * 21 19 17 24 24 H 1.48501 * 109.47400 * 330.00090 * 21 19 17 25 25 H 1.09002 * 109.47152 * 90.00315 * 1 2 3 26 26 H 1.09001 * 109.46980 * 330.00416 * 1 2 3 27 27 H 1.09004 * 109.47113 * 210.00397 * 1 2 3 28 28 H 1.08009 * 120.00152 * 359.97438 * 3 2 1 29 29 H 1.07996 * 120.00197 * 179.97438 * 4 3 2 30 30 H 1.07999 * 119.99661 * 179.97438 * 5 4 3 31 31 H 1.08005 * 119.99954 * 180.02562 * 6 5 4 32 32 H 1.09007 * 109.46764 * 204.99790 * 8 7 2 33 33 H 1.09000 * 109.47236 * 324.99456 * 8 7 2 34 34 H 1.08995 * 109.46911 * 300.00298 * 11 9 8 35 35 H 1.09009 * 109.47081 * 59.99887 * 11 9 8 36 36 H 1.09003 * 109.47067 * 179.97438 * 11 9 8 37 37 H 1.08996 * 109.47143 * 89.99860 * 15 14 12 38 38 H 1.09001 * 109.46573 * 209.99963 * 15 14 12 39 39 H 1.09004 * 109.47440 * 329.99525 * 15 14 12 40 40 H 1.08999 * 109.47671 * 210.00539 * 16 14 12 41 41 H 1.09004 * 109.46980 * 330.00022 * 16 14 12 42 42 H 0.97002 * 120.00180 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5804 1.1974 0.0005 5 6 4.2717 0.0000 0.0005 6 6 3.5806 -1.1969 0.0008 7 6 2.1981 -1.1970 0.0058 8 6 1.4446 -2.5020 0.0116 9 6 1.0812 -2.8875 -1.4238 10 1 0.5317 -2.0705 -1.8913 11 6 2.3601 -3.1620 -2.2175 12 6 0.2232 -4.1264 -1.4093 13 8 -0.0691 -4.6492 -0.3548 14 7 -0.2191 -4.6534 -2.5682 15 6 0.1346 -4.0220 -3.8421 16 6 -1.0535 -5.8573 -2.5542 17 6 -2.5052 -5.4616 -2.4721 18 1 -2.7790 -4.4174 -2.4346 19 6 -3.4840 -6.4322 -2.4449 20 7 -4.7510 -6.0867 -2.3738 21 14 -3.0106 -8.2381 -2.5090 22 1 -2.8152 -8.7479 -1.1280 23 1 -4.0914 -9.0099 -3.1733 24 1 -1.7487 -8.3921 -3.2766 25 1 -0.3633 -0.0001 -1.0277 26 1 -0.3633 0.8900 0.5138 27 1 -0.3633 -0.8900 0.5139 28 1 1.6583 2.1327 -0.0004 29 1 4.1204 2.1327 0.0001 30 1 5.3517 0.0000 0.0005 31 1 4.1206 -2.1323 0.0012 32 1 2.0694 -3.2804 0.4497 33 1 0.5337 -2.3930 0.6002 34 1 2.9806 -2.2660 -2.2278 35 1 2.9096 -3.9791 -1.7498 36 1 2.1012 -3.4371 -3.2399 37 1 1.0654 -4.4504 -4.2138 38 1 -0.6606 -4.1963 -4.5669 39 1 0.2620 -2.9498 -3.6932 40 1 -0.8835 -6.4280 -3.4671 41 1 -0.7943 -6.4690 -1.6899 42 1 -5.4396 -6.7697 -2.3542 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000599150661.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:02:21 Heat of formation + Delta-G solvation = -19.150361 kcal Electronic energy + Delta-G solvation = -21406.120954 eV Core-core repulsion = 18350.816763 eV Total energy + Delta-G solvation = -3055.304191 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.04955 -38.97437 -35.05128 -34.79324 -32.81302 -32.44922 -30.87173 -28.38565 -27.16811 -26.55417 -25.93674 -23.63185 -22.13005 -21.61531 -20.18961 -18.33495 -16.95174 -16.72259 -16.10030 -15.69354 -15.51246 -14.82288 -14.73611 -14.27957 -13.78294 -13.53109 -13.29547 -13.17156 -12.91415 -12.57135 -12.41117 -12.37773 -12.10950 -11.98647 -11.93717 -11.77988 -11.40100 -11.12725 -10.95891 -10.86973 -10.73793 -10.59822 -10.49860 -10.12944 -9.53217 -8.93549 -8.81063 -8.58344 -8.54527 -7.67754 -6.08220 -4.06845 1.31682 1.34337 3.29608 3.35597 3.37377 3.38851 3.67095 3.91785 4.40159 4.73251 4.78302 4.91264 4.96182 5.03068 5.14056 5.20232 5.26317 5.30433 5.44419 5.48467 5.63956 5.66887 5.73521 5.78180 5.79363 5.88890 5.89639 5.96652 6.06914 6.12733 6.14860 6.32795 6.41468 6.44885 6.46868 6.71349 6.73506 6.95936 6.99403 7.35859 7.61974 8.27591 8.47875 8.93674 9.01327 9.52297 11.05197 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.031941 B = 0.004040 C = 0.003863 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 876.408682 B = 6929.762537 C = 7245.855931 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.079 4.079 3 C -0.121 4.121 4 C -0.126 4.126 5 C -0.128 4.128 6 C -0.112 4.112 7 C -0.073 4.073 8 C -0.065 4.065 9 C -0.102 4.102 10 H 0.092 0.908 11 C -0.156 4.156 12 C 0.511 3.489 13 O -0.542 6.542 14 N -0.597 5.597 15 C 0.082 3.918 16 C 0.215 3.785 17 C -0.528 4.528 18 H 0.074 0.926 19 C 0.072 3.928 20 N -0.898 5.898 21 Si 0.877 3.123 22 H -0.274 1.274 23 H -0.285 1.285 24 H -0.266 1.266 25 H 0.072 0.928 26 H 0.064 0.936 27 H 0.076 0.924 28 H 0.119 0.881 29 H 0.117 0.883 30 H 0.118 0.882 31 H 0.121 0.879 32 H 0.076 0.924 33 H 0.086 0.914 34 H 0.063 0.937 35 H 0.057 0.943 36 H 0.071 0.929 37 H 0.048 0.952 38 H 0.073 0.927 39 H 0.062 0.938 40 H 0.029 0.971 41 H 0.036 0.964 42 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.293 12.625 0.502 21.417 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.079 4.079 3 C -0.139 4.139 4 C -0.144 4.144 5 C -0.146 4.146 6 C -0.130 4.130 7 C -0.073 4.073 8 C -0.102 4.102 9 C -0.123 4.123 10 H 0.110 0.890 11 C -0.213 4.213 12 C 0.298 3.702 13 O -0.419 6.419 14 N -0.328 5.328 15 C -0.062 4.062 16 C 0.094 3.906 17 C -0.567 4.567 18 H 0.092 0.908 19 C -0.130 4.130 20 N -0.537 5.537 21 Si 0.704 3.296 22 H -0.199 1.199 23 H -0.211 1.211 24 H -0.191 1.191 25 H 0.091 0.909 26 H 0.083 0.917 27 H 0.094 0.906 28 H 0.137 0.863 29 H 0.135 0.865 30 H 0.136 0.864 31 H 0.139 0.861 32 H 0.095 0.905 33 H 0.104 0.896 34 H 0.082 0.918 35 H 0.076 0.924 36 H 0.090 0.910 37 H 0.066 0.934 38 H 0.092 0.908 39 H 0.081 0.919 40 H 0.047 0.953 41 H 0.054 0.946 42 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 16.931 12.243 1.048 20.920 hybrid contribution 0.061 -0.824 -0.157 0.841 sum 16.992 11.419 0.891 20.492 Atomic orbital electron populations 1.20926 0.91083 1.03213 1.02755 1.19844 0.96199 0.92566 0.99340 1.21010 0.94230 0.97385 1.01267 1.21069 0.94303 0.97877 1.01139 1.21080 0.99593 0.92597 1.01346 1.21065 0.93616 0.98045 1.00230 1.19829 0.93624 0.94683 0.99178 1.20451 1.00723 0.93235 0.95807 1.21200 0.96937 0.96981 0.97220 0.88975 1.22081 0.96291 1.02118 1.00815 1.20338 0.80451 0.85458 0.83976 1.90657 1.58567 1.62294 1.30396 1.47793 1.50514 1.29392 1.05113 1.21806 1.00096 0.97243 0.87018 1.19656 0.90725 0.82952 0.97247 1.21335 0.88599 0.95615 1.51112 0.90800 1.24860 0.94788 0.98935 0.94461 1.69898 0.99562 1.33727 1.50466 0.86844 0.78410 0.85470 0.78916 1.19907 1.21080 1.19089 0.90921 0.91727 0.90568 0.86321 0.86488 0.86432 0.86133 0.90534 0.89603 0.91769 0.92425 0.91019 0.93381 0.90775 0.91928 0.95314 0.94595 0.92579 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.41 9.41 36.01 0.34 -1.07 16 2 C -0.08 -0.94 5.88 -104.62 -0.62 -1.56 16 3 C -0.12 -1.27 9.70 -39.58 -0.38 -1.65 16 4 C -0.13 -1.22 10.05 -39.58 -0.40 -1.62 16 5 C -0.13 -1.26 10.05 -39.58 -0.40 -1.66 16 6 C -0.11 -1.23 8.33 -39.59 -0.33 -1.56 16 7 C -0.07 -0.90 4.57 -104.63 -0.48 -1.38 16 8 C -0.06 -0.92 3.67 -27.89 -0.10 -1.02 16 9 C -0.10 -1.51 1.91 -91.77 -0.18 -1.68 16 10 H 0.09 1.30 7.20 -51.93 -0.37 0.93 16 11 C -0.16 -1.88 8.47 37.16 0.31 -1.56 16 12 C 0.51 10.37 7.08 -10.98 -0.08 10.29 16 13 O -0.54 -13.28 15.50 5.56 0.09 -13.19 16 14 N -0.60 -12.30 2.86 -182.96 -0.52 -12.83 16 15 C 0.08 1.27 8.80 59.85 0.53 1.79 16 16 C 0.21 5.30 4.23 -5.20 -0.02 5.28 16 17 C -0.53 -15.27 9.94 -34.44 -0.34 -15.61 16 18 H 0.07 2.34 8.06 -52.48 -0.42 1.91 16 19 C 0.07 2.11 5.47 -17.82 -0.10 2.01 16 20 N -0.90 -27.80 13.96 55.43 0.77 -27.03 16 21 Si 0.88 21.70 27.47 -169.99 -4.67 17.03 16 22 H -0.27 -6.82 7.11 56.52 0.40 -6.41 16 23 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 24 H -0.27 -6.20 6.54 56.52 0.37 -5.83 16 25 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 26 H 0.06 0.63 8.09 -51.93 -0.42 0.21 16 27 H 0.08 0.97 6.02 -51.93 -0.31 0.66 16 28 H 0.12 1.03 8.06 -52.48 -0.42 0.60 16 29 H 0.12 0.87 8.06 -52.49 -0.42 0.45 16 30 H 0.12 0.90 8.06 -52.49 -0.42 0.48 16 31 H 0.12 1.18 8.06 -52.48 -0.42 0.76 16 32 H 0.08 1.11 8.05 -51.92 -0.42 0.69 16 33 H 0.09 1.35 5.97 -51.93 -0.31 1.04 16 34 H 0.06 0.69 6.50 -51.93 -0.34 0.35 16 35 H 0.06 0.70 8.14 -51.92 -0.42 0.28 16 36 H 0.07 0.81 4.53 -51.93 -0.24 0.58 16 37 H 0.05 0.62 6.95 -51.93 -0.36 0.26 16 38 H 0.07 1.19 8.07 -51.93 -0.42 0.77 16 39 H 0.06 0.82 6.01 -51.93 -0.31 0.51 16 40 H 0.03 0.67 7.13 -51.93 -0.37 0.30 16 41 H 0.04 0.95 6.85 -51.93 -0.36 0.59 16 42 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 LS Contribution 334.34 15.07 5.04 5.04 Total: -1.00 -33.80 334.34 -7.88 -41.69 By element: Atomic # 1 Polarization: 6.65 SS G_CDS: -6.35 Total: 0.30 kcal Atomic # 6 Polarization: -8.77 SS G_CDS: -2.24 Total: -11.01 kcal Atomic # 7 Polarization: -40.11 SS G_CDS: 0.25 Total: -39.86 kcal Atomic # 8 Polarization: -13.28 SS G_CDS: 0.09 Total: -13.19 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -4.67 Total: 17.03 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -33.80 -7.88 -41.69 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599150661.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.538 kcal (2) G-P(sol) polarization free energy of solvation -33.804 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.266 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.885 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.689 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.150 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds