Wall clock time and date at job start Mon Mar 30 2020 02:02:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38251 * 120.00020 * 2 1 4 4 C 1.38216 * 120.00452 * 179.97438 * 3 2 1 5 5 C 1.38260 * 119.99407 * 0.02562 * 4 3 2 6 6 C 1.38210 * 120.00052 * 359.96186 * 5 4 3 7 7 C 1.38218 * 119.99968 * 179.72146 * 2 1 3 8 8 C 1.50695 * 119.99818 * 0.02562 * 7 2 1 9 9 C 1.52999 * 109.47313 * 84.99738 * 8 7 2 10 10 H 1.08995 * 109.47165 * 304.99824 * 9 8 7 11 11 C 1.53002 * 109.46977 * 64.99753 * 9 8 7 12 12 C 1.50707 * 109.47105 * 184.99600 * 9 8 7 13 13 O 1.21278 * 119.99663 * 0.02562 * 12 9 8 14 14 N 1.34772 * 119.99942 * 180.02562 * 12 9 8 15 15 C 1.46502 * 119.99884 * 0.02562 * 14 12 9 16 16 C 1.46493 * 120.00148 * 180.02562 * 14 12 9 17 17 C 1.50698 * 109.47444 * 89.99698 * 16 14 12 18 18 H 1.08009 * 119.99730 * 0.02562 * 17 16 14 19 19 C 1.37873 * 120.00541 * 180.02562 * 17 16 14 20 20 N 1.31513 * 120.00341 * 180.02562 * 19 17 16 21 21 Si 1.86799 * 119.99905 * 0.02562 * 19 17 16 22 22 H 1.48505 * 109.47229 * 89.99974 * 21 19 17 23 23 H 1.48498 * 109.47393 * 210.00026 * 21 19 17 24 24 H 1.48501 * 109.47400 * 330.00090 * 21 19 17 25 25 H 1.09002 * 109.47152 * 90.00315 * 1 2 3 26 26 H 1.09001 * 109.46980 * 330.00416 * 1 2 3 27 27 H 1.09004 * 109.47113 * 210.00397 * 1 2 3 28 28 H 1.08009 * 120.00152 * 359.97438 * 3 2 1 29 29 H 1.07996 * 120.00197 * 179.97438 * 4 3 2 30 30 H 1.07999 * 119.99661 * 179.97438 * 5 4 3 31 31 H 1.08005 * 119.99954 * 180.02562 * 6 5 4 32 32 H 1.09007 * 109.46764 * 204.99790 * 8 7 2 33 33 H 1.09000 * 109.47236 * 324.99456 * 8 7 2 34 34 H 1.08995 * 109.46911 * 300.00298 * 11 9 8 35 35 H 1.09009 * 109.47081 * 59.99887 * 11 9 8 36 36 H 1.09003 * 109.47067 * 179.97438 * 11 9 8 37 37 H 1.08996 * 109.47143 * 89.99860 * 15 14 12 38 38 H 1.09001 * 109.46573 * 209.99963 * 15 14 12 39 39 H 1.09004 * 109.47440 * 329.99525 * 15 14 12 40 40 H 1.08999 * 109.47671 * 210.00539 * 16 14 12 41 41 H 1.09004 * 109.46980 * 330.00022 * 16 14 12 42 42 H 0.97002 * 120.00180 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5804 1.1974 0.0005 5 6 4.2717 0.0000 0.0005 6 6 3.5806 -1.1969 0.0008 7 6 2.1981 -1.1970 0.0058 8 6 1.4446 -2.5020 0.0116 9 6 1.0812 -2.8875 -1.4238 10 1 0.5317 -2.0705 -1.8913 11 6 2.3601 -3.1620 -2.2175 12 6 0.2232 -4.1264 -1.4093 13 8 -0.0691 -4.6492 -0.3548 14 7 -0.2191 -4.6534 -2.5682 15 6 0.1346 -4.0220 -3.8421 16 6 -1.0535 -5.8573 -2.5542 17 6 -2.5052 -5.4616 -2.4721 18 1 -2.7790 -4.4174 -2.4346 19 6 -3.4840 -6.4322 -2.4449 20 7 -4.7510 -6.0867 -2.3738 21 14 -3.0106 -8.2381 -2.5090 22 1 -2.8152 -8.7479 -1.1280 23 1 -4.0914 -9.0099 -3.1733 24 1 -1.7487 -8.3921 -3.2766 25 1 -0.3633 -0.0001 -1.0277 26 1 -0.3633 0.8900 0.5138 27 1 -0.3633 -0.8900 0.5139 28 1 1.6583 2.1327 -0.0004 29 1 4.1204 2.1327 0.0001 30 1 5.3517 0.0000 0.0005 31 1 4.1206 -2.1323 0.0012 32 1 2.0694 -3.2804 0.4497 33 1 0.5337 -2.3930 0.6002 34 1 2.9806 -2.2660 -2.2278 35 1 2.9096 -3.9791 -1.7498 36 1 2.1012 -3.4371 -3.2399 37 1 1.0654 -4.4504 -4.2138 38 1 -0.6606 -4.1963 -4.5669 39 1 0.2620 -2.9498 -3.6932 40 1 -0.8835 -6.4280 -3.4671 41 1 -0.7943 -6.4690 -1.6899 42 1 -5.4396 -6.7697 -2.3542 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000599150661.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:02:20 Heat of formation + Delta-G solvation = -39.431312 kcal Electronic energy + Delta-G solvation = -21407.000402 eV Core-core repulsion = 18350.816763 eV Total energy + Delta-G solvation = -3056.183639 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.27374 -40.17899 -36.71980 -36.03659 -34.66852 -33.58059 -31.96211 -30.17378 -28.15566 -27.71863 -27.14293 -25.29467 -23.30808 -22.76673 -21.21569 -19.84691 -19.14666 -18.04203 -17.20113 -16.99289 -16.71871 -16.43198 -15.78555 -15.69034 -15.14719 -14.85163 -14.58686 -14.36437 -14.03401 -13.92284 -13.69578 -13.63100 -13.50952 -13.21543 -13.08599 -12.99986 -12.81093 -12.68974 -12.41225 -12.13433 -12.03926 -11.86084 -11.74282 -11.71573 -11.59801 -10.84294 -10.53862 -9.62401 -9.42417 -9.39109 -8.35140 -6.40393 0.48750 0.54284 1.31798 1.36074 1.44546 1.80074 2.30009 2.33191 2.90836 2.99219 3.55734 3.86678 3.93601 4.06393 4.07402 4.19365 4.27786 4.29951 4.45626 4.50894 4.59580 4.61255 4.71987 4.79289 4.80776 4.86051 4.89426 4.92696 4.96521 4.99339 5.02073 5.13615 5.25017 5.33110 5.39136 5.45065 5.61382 5.65788 5.68160 5.84990 6.19450 6.22857 6.60656 6.69423 7.20272 7.41490 8.81881 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.031941 B = 0.004040 C = 0.003863 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 876.408682 B = 6929.762537 C = 7245.855931 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.095 4.095 3 C -0.126 4.126 4 C -0.124 4.124 5 C -0.127 4.127 6 C -0.117 4.117 7 C -0.087 4.087 8 C -0.058 4.058 9 C -0.088 4.088 10 H 0.100 0.900 11 C -0.148 4.148 12 C 0.500 3.500 13 O -0.596 6.596 14 N -0.605 5.605 15 C 0.075 3.925 16 C 0.223 3.777 17 C -0.537 4.537 18 H 0.027 0.973 19 C 0.010 3.990 20 N -0.945 5.945 21 Si 0.949 3.051 22 H -0.277 1.277 23 H -0.274 1.274 24 H -0.237 1.237 25 H 0.071 0.929 26 H 0.079 0.921 27 H 0.053 0.947 28 H 0.136 0.864 29 H 0.144 0.856 30 H 0.144 0.856 31 H 0.130 0.870 32 H 0.068 0.932 33 H 0.058 0.942 34 H 0.084 0.916 35 H 0.055 0.945 36 H 0.084 0.916 37 H 0.085 0.915 38 H 0.065 0.935 39 H 0.086 0.914 40 H 0.051 0.949 41 H 0.018 0.982 42 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.432 13.245 -0.788 24.362 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.095 4.095 3 C -0.144 4.144 4 C -0.142 4.142 5 C -0.145 4.145 6 C -0.135 4.135 7 C -0.087 4.087 8 C -0.095 4.095 9 C -0.109 4.109 10 H 0.118 0.882 11 C -0.205 4.205 12 C 0.290 3.710 13 O -0.477 6.477 14 N -0.336 5.336 15 C -0.067 4.067 16 C 0.100 3.900 17 C -0.576 4.576 18 H 0.046 0.954 19 C -0.188 4.188 20 N -0.586 5.586 21 Si 0.772 3.228 22 H -0.203 1.203 23 H -0.199 1.199 24 H -0.160 1.160 25 H 0.090 0.910 26 H 0.098 0.902 27 H 0.071 0.929 28 H 0.154 0.846 29 H 0.162 0.838 30 H 0.161 0.839 31 H 0.148 0.852 32 H 0.087 0.913 33 H 0.077 0.923 34 H 0.103 0.897 35 H 0.075 0.925 36 H 0.102 0.898 37 H 0.103 0.897 38 H 0.084 0.916 39 H 0.105 0.895 40 H 0.069 0.931 41 H 0.036 0.964 42 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 20.101 12.899 -0.287 23.886 hybrid contribution -0.940 -0.875 0.286 1.316 sum 19.161 12.024 -0.002 22.621 Atomic orbital electron populations 1.20896 0.91616 1.02817 1.02562 1.19932 0.96077 0.93193 1.00272 1.21254 0.94962 0.97388 1.00814 1.21441 0.94050 0.99081 0.99596 1.21409 1.00968 0.92027 1.00120 1.21219 0.92928 0.99244 1.00078 1.19666 0.94272 0.93550 1.01241 1.20300 0.99717 0.94485 0.95019 1.21161 0.97400 0.93960 0.98399 0.88174 1.22058 0.94620 1.03078 1.00695 1.21381 0.80230 0.86432 0.83007 1.90619 1.60628 1.64129 1.32313 1.47919 1.49691 1.28650 1.07305 1.22135 1.01375 0.98737 0.84427 1.19339 0.88664 0.84782 0.97210 1.21569 0.91406 0.93602 1.51010 0.95444 1.25867 0.94513 1.04546 0.93827 1.70051 1.00985 1.35712 1.51804 0.85699 0.79550 0.78506 0.79095 1.20267 1.19890 1.16028 0.91035 0.90238 0.92860 0.84636 0.83827 0.83865 0.85175 0.91343 0.92313 0.89738 0.92543 0.89766 0.89677 0.91617 0.89508 0.93093 0.96439 0.92247 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.86 9.41 71.24 0.67 -2.19 16 2 C -0.09 -2.16 5.88 -19.87 -0.12 -2.28 16 3 C -0.13 -2.35 9.70 22.27 0.22 -2.13 16 4 C -0.12 -1.97 10.05 22.27 0.22 -1.75 16 5 C -0.13 -2.07 10.05 22.27 0.22 -1.84 16 6 C -0.12 -2.30 8.33 22.27 0.19 -2.12 16 7 C -0.09 -2.08 4.57 -19.87 -0.09 -2.17 16 8 C -0.06 -1.68 3.67 29.85 0.11 -1.57 16 9 C -0.09 -2.57 1.91 -11.54 -0.02 -2.60 16 10 H 0.10 2.77 7.20 -2.39 -0.02 2.75 16 11 C -0.15 -3.18 8.47 71.98 0.61 -2.57 16 12 C 0.50 20.73 7.08 87.66 0.62 21.35 16 13 O -0.60 -30.67 15.50 -3.02 -0.05 -30.71 16 14 N -0.61 -24.90 2.86 -851.15 -2.43 -27.33 16 15 C 0.08 2.16 8.80 127.77 1.12 3.29 16 16 C 0.22 11.02 4.23 85.63 0.36 11.38 16 17 C -0.54 -32.17 9.94 25.60 0.25 -31.91 16 18 H 0.03 1.83 8.06 -2.91 -0.02 1.81 16 19 C 0.01 0.62 5.47 84.65 0.46 1.09 16 20 N -0.95 -60.44 13.96 21.45 0.30 -60.14 16 21 Si 0.95 44.94 27.47 68.60 1.88 46.83 16 22 H -0.28 -13.22 7.11 99.48 0.71 -12.52 16 23 H -0.27 -12.39 7.11 99.48 0.71 -11.68 16 24 H -0.24 -10.05 6.54 99.48 0.65 -9.39 16 25 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 26 H 0.08 1.55 8.09 -2.39 -0.02 1.53 16 27 H 0.05 1.47 6.02 -2.38 -0.01 1.45 16 28 H 0.14 1.99 8.06 -2.91 -0.02 1.96 16 29 H 0.14 1.50 8.06 -2.91 -0.02 1.48 16 30 H 0.14 1.57 8.06 -2.91 -0.02 1.55 16 31 H 0.13 2.25 8.06 -2.91 -0.02 2.23 16 32 H 0.07 2.05 8.05 -2.38 -0.02 2.03 16 33 H 0.06 2.00 5.97 -2.39 -0.01 1.99 16 34 H 0.08 1.53 6.50 -2.39 -0.02 1.51 16 35 H 0.06 1.25 8.14 -2.38 -0.02 1.23 16 36 H 0.08 1.60 4.53 -2.39 -0.01 1.59 16 37 H 0.09 1.86 6.95 -2.39 -0.02 1.85 16 38 H 0.06 2.02 8.07 -2.39 -0.02 2.00 16 39 H 0.09 2.07 6.01 -2.38 -0.01 2.06 16 40 H 0.05 2.30 7.13 -2.39 -0.02 2.28 16 41 H 0.02 0.93 6.85 -2.39 -0.02 0.92 16 42 H 0.27 15.92 8.31 -92.71 -0.77 15.15 16 Total: -1.00 -77.49 334.34 5.48 -72.01 By element: Atomic # 1 Polarization: 14.43 SS G_CDS: 0.94 Total: 15.38 kcal Atomic # 6 Polarization: -20.85 SS G_CDS: 4.83 Total: -16.02 kcal Atomic # 7 Polarization: -85.35 SS G_CDS: -2.13 Total: -87.48 kcal Atomic # 8 Polarization: -30.67 SS G_CDS: -0.05 Total: -30.71 kcal Atomic # 14 Polarization: 44.94 SS G_CDS: 1.88 Total: 46.83 kcal Total: -77.49 5.48 -72.01 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599150661.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.575 kcal (2) G-P(sol) polarization free energy of solvation -77.489 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.914 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.482 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.006 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.431 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds