Wall clock time and date at job start Mon Mar 30 2020 02:02:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38260 * 119.99864 * 2 1 4 4 C 1.38206 * 119.99756 * 180.27369 * 3 2 1 5 5 C 1.38260 * 119.99999 * 359.74632 * 4 3 2 6 6 C 1.38209 * 120.00272 * 359.97438 * 5 4 3 7 7 C 1.38209 * 119.99724 * 179.74696 * 2 1 3 8 8 C 1.50697 * 120.00491 * 359.97438 * 7 2 1 9 9 C 1.52997 * 109.47058 * 84.72962 * 8 7 2 10 10 H 1.09000 * 109.46857 * 304.99574 * 9 8 7 11 11 C 1.52998 * 109.47477 * 64.99929 * 9 8 7 12 12 C 1.50705 * 109.47273 * 185.00382 * 9 8 7 13 13 O 1.21278 * 119.99744 * 359.97438 * 12 9 8 14 14 N 1.34768 * 120.00177 * 179.97438 * 12 9 8 15 15 C 1.46500 * 120.00056 * 179.97438 * 14 12 9 16 16 H 1.08998 * 109.46845 * 35.00845 * 15 14 12 17 17 C 1.52997 * 109.47473 * 275.00296 * 15 14 12 18 18 C 1.50706 * 109.47187 * 154.99900 * 15 14 12 19 19 H 1.07998 * 119.99629 * 0.02562 * 18 15 14 20 20 C 1.37875 * 119.99955 * 179.97438 * 18 15 14 21 21 N 1.31510 * 120.00308 * 0.02562 * 20 18 15 22 22 Si 1.86800 * 119.99908 * 180.02562 * 20 18 15 23 23 H 1.48507 * 109.46754 * 90.00468 * 22 20 18 24 24 H 1.48498 * 109.47278 * 210.00299 * 22 20 18 25 25 H 1.48498 * 109.47109 * 330.00728 * 22 20 18 26 26 H 1.09000 * 109.47420 * 270.25330 * 1 2 3 27 27 H 1.09003 * 109.47349 * 30.25725 * 1 2 3 28 28 H 1.09005 * 109.47063 * 150.25394 * 1 2 3 29 29 H 1.07999 * 120.00030 * 0.04563 * 3 2 1 30 30 H 1.08003 * 119.99808 * 179.77132 * 4 3 2 31 31 H 1.08001 * 120.00152 * 179.97438 * 5 4 3 32 32 H 1.07994 * 120.00474 * 179.97438 * 6 5 4 33 33 H 1.09004 * 109.46851 * 324.72968 * 8 7 2 34 34 H 1.09000 * 109.46956 * 204.72741 * 8 7 2 35 35 H 1.08998 * 109.46853 * 60.00015 * 11 9 8 36 36 H 1.08997 * 109.47149 * 179.97438 * 11 9 8 37 37 H 1.09000 * 109.46684 * 300.00254 * 11 9 8 38 38 H 0.97001 * 120.00396 * 359.97438 * 14 12 9 39 39 H 1.09002 * 109.47153 * 59.99757 * 17 15 14 40 40 H 1.09001 * 109.46832 * 299.99948 * 17 15 14 41 41 H 1.09004 * 109.47261 * 179.97438 * 17 15 14 42 42 H 0.96998 * 120.00365 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1974 0.0000 4 6 3.5804 1.1974 -0.0057 5 6 4.2716 0.0000 -0.0061 6 6 3.5806 -1.1970 -0.0003 7 6 2.1980 -1.1969 0.0053 8 6 1.4446 -2.5020 0.0116 9 6 1.0743 -2.8841 -1.4228 10 1 0.5225 -2.0660 -1.8858 11 6 2.3493 -3.1567 -2.2234 12 6 0.2164 -4.1230 -1.4072 13 8 -0.0702 -4.6488 -0.3526 14 7 -0.2324 -4.6466 -2.5651 15 6 -1.0659 -5.8512 -2.5500 16 1 -1.7092 -5.8368 -1.6702 17 6 -0.1701 -7.0908 -2.5067 18 6 -1.9165 -5.8893 -3.7935 19 1 -1.8431 -5.0957 -4.5223 20 6 -2.7875 -6.9377 -4.0011 21 7 -2.8764 -7.9043 -3.1138 22 14 -3.8413 -6.9852 -5.5427 23 1 -3.1121 -7.7035 -6.6187 24 1 -5.1143 -7.6918 -5.2506 25 1 -4.1350 -5.5982 -5.9845 26 1 -0.3634 0.0045 1.0276 27 1 -0.3634 0.8877 -0.5178 28 1 -0.3633 -0.8923 -0.5099 29 1 1.6583 2.1327 0.0007 30 1 4.1203 2.1327 -0.0095 31 1 5.3516 -0.0001 -0.0110 32 1 4.1206 -2.1322 -0.0010 33 1 0.5365 -2.3944 0.6049 34 1 2.0715 -3.2814 0.4449 35 1 2.9010 -3.9748 -1.7604 36 1 2.0855 -3.4294 -3.2452 37 1 2.9698 -2.2606 -2.2346 38 1 -0.0035 -4.2259 -3.4086 39 1 0.4451 -7.0633 -1.6073 40 1 0.4731 -7.1051 -3.3865 41 1 -0.7904 -7.9871 -2.4949 42 1 -3.4895 -8.6417 -3.2596 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000599221558.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:02:46 Heat of formation + Delta-G solvation = -58.016010 kcal Electronic energy + Delta-G solvation = -21106.314943 eV Core-core repulsion = 18049.325412 eV Total energy + Delta-G solvation = -3056.989532 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.14060 -40.12278 -36.85171 -35.85676 -34.32883 -33.54554 -31.95763 -30.46157 -28.13397 -27.37156 -27.33280 -24.86467 -22.95597 -22.52876 -21.34306 -20.69128 -18.84710 -17.70316 -17.19143 -16.93911 -16.69568 -16.16322 -15.87876 -15.69189 -15.03873 -14.68038 -14.49792 -14.33691 -13.96450 -13.79974 -13.70142 -13.45018 -13.15595 -13.02145 -12.98712 -12.84293 -12.77716 -12.72273 -12.29029 -12.18632 -12.13710 -11.99623 -11.70463 -11.67138 -11.10231 -10.66399 -10.50936 -9.73396 -9.62468 -9.40451 -8.17836 -6.35659 0.48879 0.54703 1.44604 1.45419 1.56105 1.84134 2.35375 2.62559 2.92375 3.12405 3.75661 3.87428 3.95476 4.09041 4.09339 4.21841 4.31608 4.45016 4.52163 4.58353 4.75194 4.79144 4.81153 4.85649 4.90814 4.92018 4.96006 5.02807 5.09123 5.14557 5.24387 5.29917 5.39390 5.43984 5.61708 5.66457 5.68572 5.69187 5.84133 5.90917 6.10013 6.19881 6.72592 6.98180 7.32266 7.57390 8.88495 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.032493 B = 0.003571 C = 0.003461 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 861.526087 B = 7838.446027 C = 8088.953487 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.094 4.094 3 C -0.126 4.126 4 C -0.125 4.125 5 C -0.129 4.129 6 C -0.120 4.120 7 C -0.088 4.088 8 C -0.055 4.055 9 C -0.092 4.092 10 H 0.108 0.892 11 C -0.137 4.137 12 C 0.501 3.499 13 O -0.601 6.601 14 N -0.704 5.704 15 C 0.270 3.730 16 H -0.003 1.003 17 C -0.133 4.133 18 C -0.547 4.547 19 H 0.073 0.927 20 C 0.014 3.986 21 N -0.918 5.918 22 Si 0.973 3.027 23 H -0.271 1.271 24 H -0.287 1.287 25 H -0.263 1.263 26 H 0.071 0.929 27 H 0.081 0.919 28 H 0.057 0.943 29 H 0.138 0.862 30 H 0.143 0.857 31 H 0.141 0.859 32 H 0.127 0.873 33 H 0.063 0.937 34 H 0.065 0.935 35 H 0.053 0.947 36 H 0.068 0.932 37 H 0.084 0.916 38 H 0.404 0.596 39 H 0.010 0.990 40 H 0.040 0.960 41 H 0.066 0.934 42 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.045 18.219 1.959 22.493 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.094 4.094 3 C -0.144 4.144 4 C -0.143 4.143 5 C -0.147 4.147 6 C -0.138 4.138 7 C -0.088 4.088 8 C -0.093 4.093 9 C -0.113 4.113 10 H 0.126 0.874 11 C -0.194 4.194 12 C 0.288 3.712 13 O -0.483 6.483 14 N -0.353 5.353 15 C 0.166 3.834 16 H 0.015 0.985 17 C -0.191 4.191 18 C -0.585 4.585 19 H 0.091 0.909 20 C -0.186 4.186 21 N -0.557 5.557 22 Si 0.798 3.202 23 H -0.196 1.196 24 H -0.212 1.212 25 H -0.188 1.188 26 H 0.089 0.911 27 H 0.100 0.900 28 H 0.076 0.924 29 H 0.155 0.845 30 H 0.161 0.839 31 H 0.159 0.841 32 H 0.145 0.855 33 H 0.082 0.918 34 H 0.084 0.916 35 H 0.072 0.928 36 H 0.087 0.913 37 H 0.103 0.897 38 H 0.239 0.761 39 H 0.030 0.970 40 H 0.059 0.941 41 H 0.085 0.915 42 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 12.728 17.659 2.716 21.937 hybrid contribution -0.765 -0.541 -0.705 1.172 sum 11.963 17.118 2.011 20.981 Atomic orbital electron populations 1.20899 0.91160 1.03096 1.02642 1.19974 0.96409 0.92965 1.00044 1.21272 0.94854 0.97539 1.00760 1.21439 0.94221 0.98952 0.99648 1.21397 1.00910 0.92134 1.00278 1.21230 0.93195 0.99133 1.00207 1.19700 0.94166 0.93771 1.01194 1.20259 0.99842 0.94268 0.94882 1.21243 0.97223 0.94387 0.98459 0.87450 1.21786 0.95208 1.02884 0.99535 1.21341 0.80162 0.86245 0.83447 1.90621 1.60673 1.64538 1.32494 1.46291 1.51203 1.29260 1.08505 1.18329 0.87952 0.81175 0.95929 0.98549 1.21888 0.98441 1.01683 0.97125 1.21555 1.22825 1.08313 1.05840 0.90878 1.25818 0.98037 0.94773 1.00011 1.70054 1.37625 1.11390 1.36591 0.85330 0.77598 0.78588 0.78730 1.19598 1.21241 1.18758 0.91056 0.89992 0.92435 0.84458 0.83906 0.84109 0.85479 0.91807 0.91614 0.92773 0.91330 0.89680 0.76127 0.97044 0.94071 0.91549 0.92549 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.49 9.22 71.24 0.66 -1.83 16 2 C -0.09 -2.02 5.88 -19.86 -0.12 -2.13 16 3 C -0.13 -2.24 9.70 22.27 0.22 -2.03 16 4 C -0.12 -1.97 10.05 22.27 0.22 -1.75 16 5 C -0.13 -2.15 10.05 22.27 0.22 -1.93 16 6 C -0.12 -2.41 8.36 22.27 0.19 -2.22 16 7 C -0.09 -2.05 4.56 -19.87 -0.09 -2.14 16 8 C -0.05 -1.54 3.48 29.85 0.10 -1.43 16 9 C -0.09 -2.63 2.46 -11.54 -0.03 -2.66 16 10 H 0.11 2.76 7.00 -2.39 -0.02 2.74 16 11 C -0.14 -3.20 8.74 71.98 0.63 -2.57 16 12 C 0.50 20.22 7.12 87.66 0.62 20.85 16 13 O -0.60 -29.94 15.58 -3.02 -0.05 -29.99 16 14 N -0.70 -29.62 4.96 -446.10 -2.21 -31.84 16 15 C 0.27 14.22 2.56 44.25 0.11 14.33 16 16 H 0.00 -0.21 7.58 -2.39 -0.02 -0.23 16 17 C -0.13 -6.84 9.26 71.98 0.67 -6.17 16 18 C -0.55 -29.22 8.73 25.60 0.22 -28.99 16 19 H 0.07 3.63 7.74 -2.91 -0.02 3.61 16 20 C 0.01 0.73 5.30 84.65 0.45 1.18 16 21 N -0.92 -53.17 11.32 21.45 0.24 -52.93 16 22 Si 0.97 42.11 29.54 68.60 2.03 44.13 16 23 H -0.27 -11.27 7.11 99.48 0.71 -10.57 16 24 H -0.29 -12.39 7.11 99.48 0.71 -11.69 16 25 H -0.26 -10.87 7.11 99.48 0.71 -10.17 16 26 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 27 H 0.08 1.35 8.09 -2.39 -0.02 1.33 16 28 H 0.06 1.35 5.47 -2.38 -0.01 1.34 16 29 H 0.14 1.85 8.06 -2.91 -0.02 1.82 16 30 H 0.14 1.50 8.06 -2.91 -0.02 1.47 16 31 H 0.14 1.66 8.06 -2.91 -0.02 1.63 16 32 H 0.13 2.32 8.06 -2.91 -0.02 2.30 16 33 H 0.06 2.00 6.82 -2.38 -0.02 1.99 16 34 H 0.07 1.95 8.05 -2.39 -0.02 1.93 16 35 H 0.05 1.33 8.14 -2.39 -0.02 1.31 16 36 H 0.07 1.51 7.57 -2.39 -0.02 1.49 16 37 H 0.08 1.67 6.52 -2.39 -0.02 1.66 16 38 H 0.40 14.33 7.96 -92.71 -0.74 13.59 16 39 H 0.01 0.54 8.14 -2.39 -0.02 0.52 16 40 H 0.04 1.94 8.14 -2.39 -0.02 1.92 16 41 H 0.07 3.74 6.07 -2.38 -0.01 3.73 16 42 H 0.27 14.51 8.31 -92.71 -0.77 13.74 16 Total: -1.00 -67.59 340.13 4.36 -63.23 By element: Atomic # 1 Polarization: 26.62 SS G_CDS: 0.27 Total: 26.89 kcal Atomic # 6 Polarization: -23.58 SS G_CDS: 4.08 Total: -19.50 kcal Atomic # 7 Polarization: -82.80 SS G_CDS: -1.97 Total: -84.77 kcal Atomic # 8 Polarization: -29.94 SS G_CDS: -0.05 Total: -29.99 kcal Atomic # 14 Polarization: 42.11 SS G_CDS: 2.03 Total: 44.13 kcal Total: -67.59 4.36 -63.23 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599221558.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.215 kcal (2) G-P(sol) polarization free energy of solvation -67.586 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.371 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.355 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.231 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.016 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds