Wall clock time and date at job start Mon Mar 30 2020 02:02:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38251 * 120.00020 * 2 1 4 4 C 1.38216 * 120.00452 * 179.97438 * 3 2 1 5 5 C 1.38260 * 119.99407 * 0.02562 * 4 3 2 6 6 C 1.38210 * 120.00052 * 359.96186 * 5 4 3 7 7 C 1.38218 * 119.99968 * 179.72146 * 2 1 3 8 8 C 1.50695 * 119.99818 * 0.02562 * 7 2 1 9 9 C 1.52999 * 109.47313 * 84.99738 * 8 7 2 10 10 H 1.08995 * 109.47165 * 304.99824 * 9 8 7 11 11 C 1.53002 * 109.46977 * 64.99753 * 9 8 7 12 12 C 1.50707 * 109.47105 * 184.99600 * 9 8 7 13 13 O 1.21278 * 119.99663 * 0.02562 * 12 9 8 14 14 N 1.34772 * 119.99942 * 180.02562 * 12 9 8 15 15 C 1.46493 * 120.00148 * 180.02562 * 14 12 9 16 16 H 1.09009 * 109.47037 * 325.00021 * 15 14 12 17 17 C 1.53000 * 109.47281 * 84.99712 * 15 14 12 18 18 C 1.50706 * 109.47445 * 205.00251 * 15 14 12 19 19 H 1.07991 * 119.99727 * 359.97438 * 18 15 14 20 20 C 1.37878 * 120.00037 * 179.97438 * 18 15 14 21 21 N 1.31512 * 119.99718 * 359.97438 * 20 18 15 22 22 Si 1.86794 * 119.99811 * 179.97438 * 20 18 15 23 23 H 1.48495 * 109.47146 * 359.97438 * 22 20 18 24 24 H 1.48500 * 109.47246 * 120.00122 * 22 20 18 25 25 H 1.48503 * 109.47214 * 240.00127 * 22 20 18 26 26 H 1.09002 * 109.47152 * 90.00315 * 1 2 3 27 27 H 1.09001 * 109.46980 * 330.00416 * 1 2 3 28 28 H 1.09004 * 109.47113 * 210.00397 * 1 2 3 29 29 H 1.08009 * 120.00152 * 359.97438 * 3 2 1 30 30 H 1.07996 * 120.00197 * 179.97438 * 4 3 2 31 31 H 1.07999 * 119.99661 * 179.97438 * 5 4 3 32 32 H 1.08005 * 119.99954 * 180.02562 * 6 5 4 33 33 H 1.09007 * 109.46764 * 204.99790 * 8 7 2 34 34 H 1.09000 * 109.47236 * 324.99456 * 8 7 2 35 35 H 1.08995 * 109.46911 * 300.00298 * 11 9 8 36 36 H 1.09009 * 109.47081 * 59.99887 * 11 9 8 37 37 H 1.09003 * 109.47067 * 179.97438 * 11 9 8 38 38 H 0.97003 * 119.99917 * 0.02562 * 14 12 9 39 39 H 1.09004 * 109.46548 * 60.00539 * 17 15 14 40 40 H 1.09003 * 109.47414 * 179.97438 * 17 15 14 41 41 H 1.09000 * 109.47549 * 300.00558 * 17 15 14 42 42 H 0.97008 * 119.99741 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5804 1.1974 0.0005 5 6 4.2717 0.0000 0.0005 6 6 3.5806 -1.1969 0.0008 7 6 2.1981 -1.1970 0.0058 8 6 1.4446 -2.5020 0.0116 9 6 1.0812 -2.8875 -1.4238 10 1 0.5317 -2.0705 -1.8913 11 6 2.3601 -3.1620 -2.2175 12 6 0.2232 -4.1264 -1.4093 13 8 -0.0691 -4.6492 -0.3548 14 7 -0.2191 -4.6534 -2.5682 15 6 -1.0535 -5.8573 -2.5542 16 1 -0.7346 -6.5109 -1.7421 17 6 -2.5166 -5.4615 -2.3456 18 6 -0.9115 -6.5824 -3.8677 19 1 -0.2647 -6.1857 -4.6362 20 6 -1.6073 -7.7521 -4.0882 21 7 -2.3945 -8.2353 -3.1521 22 14 -1.4318 -8.6503 -5.7166 23 1 -0.4941 -7.9052 -6.5944 24 1 -0.9035 -10.0168 -5.4738 25 1 -2.7590 -8.7428 -6.3765 26 1 -0.3633 -0.0001 -1.0277 27 1 -0.3633 0.8900 0.5138 28 1 -0.3633 -0.8900 0.5139 29 1 1.6583 2.1327 -0.0004 30 1 4.1204 2.1327 0.0001 31 1 5.3517 0.0000 0.0005 32 1 4.1206 -2.1323 0.0012 33 1 2.0694 -3.2804 0.4497 34 1 0.5337 -2.3930 0.6002 35 1 2.9806 -2.2660 -2.2278 36 1 2.9096 -3.9791 -1.7498 37 1 2.1012 -3.4371 -3.2399 38 1 0.0151 -4.2354 -3.4117 39 1 -2.8354 -4.8080 -3.1577 40 1 -3.1375 -6.3573 -2.3356 41 1 -2.6193 -4.9371 -1.3956 42 1 -2.8843 -9.0581 -3.3074 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000599221559.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:02:50 Heat of formation + Delta-G solvation = -40.272878 kcal Electronic energy + Delta-G solvation = -21102.158944 eV Core-core repulsion = 18045.938812 eV Total energy + Delta-G solvation = -3056.220132 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -39.96896 -38.79884 -35.14668 -34.44562 -32.80450 -32.33424 -30.85420 -28.66195 -27.21881 -26.42763 -25.25302 -23.51947 -22.05311 -21.05354 -20.04151 -19.12548 -17.18110 -16.39963 -15.82254 -15.62715 -15.31128 -14.83053 -14.53677 -14.46106 -13.73641 -13.33585 -13.20621 -13.08714 -12.86197 -12.54452 -12.40492 -12.15593 -12.07110 -11.84446 -11.65490 -11.18901 -11.11278 -10.99622 -10.90508 -10.83600 -10.68859 -10.61529 -10.28361 -10.23257 -9.02817 -8.93655 -8.82123 -8.57294 -8.52307 -7.86737 -6.11690 -4.20745 1.30190 1.33105 3.23704 3.31483 3.34171 3.45502 3.67850 4.13497 4.38742 4.76052 4.80366 4.93200 4.98093 5.07306 5.16364 5.20659 5.27299 5.34645 5.44390 5.58022 5.64246 5.73102 5.79053 5.90006 5.90363 5.97705 6.09647 6.11536 6.32357 6.39860 6.43543 6.46110 6.70953 6.83990 6.97622 6.98444 7.17126 7.49543 7.58738 7.71267 7.93450 8.16562 8.70920 8.80174 9.17547 9.47227 10.94329 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.034514 B = 0.003561 C = 0.003414 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 811.058928 B = 7862.044941 C = 8199.894952 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.082 4.082 3 C -0.121 4.121 4 C -0.126 4.126 5 C -0.127 4.127 6 C -0.111 4.111 7 C -0.073 4.073 8 C -0.064 4.064 9 C -0.105 4.105 10 H 0.090 0.910 11 C -0.143 4.143 12 C 0.505 3.495 13 O -0.557 6.557 14 N -0.708 5.708 15 C 0.263 3.737 16 H 0.048 0.952 17 C -0.146 4.146 18 C -0.532 4.532 19 H 0.061 0.939 20 C 0.065 3.935 21 N -0.884 5.884 22 Si 0.901 3.099 23 H -0.273 1.273 24 H -0.283 1.283 25 H -0.283 1.283 26 H 0.071 0.929 27 H 0.063 0.937 28 H 0.074 0.926 29 H 0.118 0.882 30 H 0.117 0.883 31 H 0.118 0.882 32 H 0.122 0.878 33 H 0.077 0.923 34 H 0.084 0.916 35 H 0.063 0.937 36 H 0.059 0.941 37 H 0.061 0.939 38 H 0.388 0.612 39 H 0.025 0.975 40 H 0.089 0.911 41 H 0.014 0.986 42 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.753 17.230 3.741 20.149 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.082 4.082 3 C -0.139 4.139 4 C -0.144 4.144 5 C -0.145 4.145 6 C -0.129 4.129 7 C -0.073 4.073 8 C -0.101 4.101 9 C -0.127 4.127 10 H 0.108 0.892 11 C -0.201 4.201 12 C 0.289 3.711 13 O -0.436 6.436 14 N -0.356 5.356 15 C 0.162 3.838 16 H 0.066 0.934 17 C -0.205 4.205 18 C -0.571 4.571 19 H 0.079 0.921 20 C -0.138 4.138 21 N -0.521 5.521 22 Si 0.728 3.272 23 H -0.197 1.197 24 H -0.209 1.209 25 H -0.209 1.209 26 H 0.090 0.910 27 H 0.082 0.918 28 H 0.093 0.907 29 H 0.136 0.864 30 H 0.135 0.865 31 H 0.136 0.864 32 H 0.140 0.860 33 H 0.096 0.904 34 H 0.102 0.898 35 H 0.082 0.918 36 H 0.078 0.922 37 H 0.080 0.920 38 H 0.220 0.780 39 H 0.045 0.955 40 H 0.108 0.892 41 H 0.033 0.967 42 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 9.389 16.656 4.517 19.646 hybrid contribution 0.199 -0.263 -1.353 1.393 sum 9.588 16.393 3.164 19.252 Atomic orbital electron populations 1.20910 0.91247 1.03061 1.02613 1.19817 0.96117 0.92591 0.99646 1.20998 0.94246 0.97340 1.01340 1.21070 0.94304 0.97891 1.01145 1.21095 0.99654 0.92589 1.01179 1.21091 0.93653 0.98117 1.00059 1.19846 0.93666 0.94709 0.99096 1.20442 1.00615 0.93216 0.95873 1.21257 0.97171 0.97074 0.97167 0.89218 1.21809 0.96315 1.02040 0.99922 1.20395 0.80561 0.85385 0.84723 1.90643 1.59347 1.62690 1.30944 1.46520 1.51703 1.30275 1.07061 1.18730 0.86433 0.80830 0.97855 0.93437 1.22073 1.00379 1.01528 0.96539 1.21268 1.27595 1.08131 1.00083 0.92070 1.24894 0.94826 0.96953 0.97097 1.69919 1.28129 1.21175 1.32895 0.86402 0.77915 0.79593 0.83241 1.19744 1.20878 1.20888 0.91009 0.91799 0.90676 0.86368 0.86483 0.86384 0.86029 0.90442 0.89775 0.91831 0.92157 0.92005 0.77993 0.95543 0.89201 0.96684 0.92661 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.26 9.41 36.01 0.34 -0.92 16 2 C -0.08 -0.93 5.88 -104.62 -0.62 -1.54 16 3 C -0.12 -1.23 9.70 -39.58 -0.38 -1.62 16 4 C -0.13 -1.21 10.05 -39.58 -0.40 -1.61 16 5 C -0.13 -1.26 10.05 -39.58 -0.40 -1.65 16 6 C -0.11 -1.23 8.33 -39.59 -0.33 -1.56 16 7 C -0.07 -0.88 4.57 -104.63 -0.48 -1.36 16 8 C -0.06 -0.88 3.67 -27.89 -0.10 -0.99 16 9 C -0.11 -1.52 2.71 -91.77 -0.25 -1.77 16 10 H 0.09 1.19 7.94 -51.93 -0.41 0.77 16 11 C -0.14 -1.83 8.73 37.16 0.32 -1.51 16 12 C 0.50 9.97 7.12 -10.98 -0.08 9.89 16 13 O -0.56 -13.22 15.58 5.56 0.09 -13.13 16 14 N -0.71 -14.77 4.96 -54.93 -0.27 -15.04 16 15 C 0.26 6.75 2.56 -69.08 -0.18 6.57 16 16 H 0.05 1.41 7.58 -51.92 -0.39 1.01 16 17 C -0.15 -3.68 9.26 37.16 0.34 -3.33 16 18 C -0.53 -14.17 8.73 -34.44 -0.30 -14.47 16 19 H 0.06 1.56 7.74 -52.49 -0.41 1.15 16 20 C 0.07 1.77 5.30 -17.82 -0.09 1.67 16 21 N -0.88 -25.02 11.32 55.43 0.63 -24.39 16 22 Si 0.90 20.69 29.54 -169.99 -5.02 15.67 16 23 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 24 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 25 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 26 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 27 H 0.06 0.56 8.09 -51.93 -0.42 0.14 16 28 H 0.07 0.85 6.02 -51.93 -0.31 0.54 16 29 H 0.12 0.97 8.06 -52.48 -0.42 0.55 16 30 H 0.12 0.86 8.06 -52.49 -0.42 0.44 16 31 H 0.12 0.92 8.06 -52.49 -0.42 0.50 16 32 H 0.12 1.22 8.06 -52.48 -0.42 0.80 16 33 H 0.08 1.12 8.05 -51.92 -0.42 0.70 16 34 H 0.08 1.24 5.97 -51.93 -0.31 0.93 16 35 H 0.06 0.72 6.50 -51.93 -0.34 0.38 16 36 H 0.06 0.80 8.14 -51.92 -0.42 0.38 16 37 H 0.06 0.77 7.56 -51.93 -0.39 0.38 16 38 H 0.39 7.06 7.95 -40.82 -0.32 6.74 16 39 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 40 H 0.09 2.45 6.07 -51.93 -0.32 2.13 16 41 H 0.01 0.35 8.14 -51.93 -0.42 -0.07 16 42 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 LS Contribution 341.38 15.07 5.14 5.14 Total: -1.00 -30.58 341.38 -8.59 -39.17 By element: Atomic # 1 Polarization: 13.34 SS G_CDS: -6.56 Total: 6.78 kcal Atomic # 6 Polarization: -11.60 SS G_CDS: -2.60 Total: -14.20 kcal Atomic # 7 Polarization: -39.79 SS G_CDS: 0.36 Total: -39.44 kcal Atomic # 8 Polarization: -13.22 SS G_CDS: 0.09 Total: -13.13 kcal Atomic # 14 Polarization: 20.69 SS G_CDS: -5.02 Total: 15.67 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -30.58 -8.59 -39.17 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599221559.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.099 kcal (2) G-P(sol) polarization free energy of solvation -30.582 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.681 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.592 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.174 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.273 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds