Wall clock time and date at job start Mon Mar 30 2020 02:02:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38251 * 120.00020 * 2 1 4 4 C 1.38216 * 120.00452 * 179.97438 * 3 2 1 5 5 C 1.38260 * 119.99407 * 0.02562 * 4 3 2 6 6 C 1.38210 * 120.00052 * 359.96186 * 5 4 3 7 7 C 1.38218 * 119.99968 * 179.72146 * 2 1 3 8 8 C 1.50695 * 119.99818 * 0.02562 * 7 2 1 9 9 C 1.52999 * 109.47313 * 84.99738 * 8 7 2 10 10 H 1.08995 * 109.47165 * 304.99824 * 9 8 7 11 11 C 1.53002 * 109.46977 * 64.99753 * 9 8 7 12 12 C 1.50707 * 109.47105 * 184.99600 * 9 8 7 13 13 O 1.21278 * 119.99663 * 0.02562 * 12 9 8 14 14 N 1.34772 * 119.99942 * 180.02562 * 12 9 8 15 15 C 1.46493 * 120.00148 * 180.02562 * 14 12 9 16 16 H 1.09009 * 109.47037 * 325.00021 * 15 14 12 17 17 C 1.53000 * 109.47281 * 84.99712 * 15 14 12 18 18 C 1.50706 * 109.47445 * 205.00251 * 15 14 12 19 19 H 1.07991 * 119.99727 * 359.97438 * 18 15 14 20 20 C 1.37878 * 120.00037 * 179.97438 * 18 15 14 21 21 N 1.31512 * 119.99718 * 359.97438 * 20 18 15 22 22 Si 1.86794 * 119.99811 * 179.97438 * 20 18 15 23 23 H 1.48495 * 109.47146 * 359.97438 * 22 20 18 24 24 H 1.48500 * 109.47246 * 120.00122 * 22 20 18 25 25 H 1.48503 * 109.47214 * 240.00127 * 22 20 18 26 26 H 1.09002 * 109.47152 * 90.00315 * 1 2 3 27 27 H 1.09001 * 109.46980 * 330.00416 * 1 2 3 28 28 H 1.09004 * 109.47113 * 210.00397 * 1 2 3 29 29 H 1.08009 * 120.00152 * 359.97438 * 3 2 1 30 30 H 1.07996 * 120.00197 * 179.97438 * 4 3 2 31 31 H 1.07999 * 119.99661 * 179.97438 * 5 4 3 32 32 H 1.08005 * 119.99954 * 180.02562 * 6 5 4 33 33 H 1.09007 * 109.46764 * 204.99790 * 8 7 2 34 34 H 1.09000 * 109.47236 * 324.99456 * 8 7 2 35 35 H 1.08995 * 109.46911 * 300.00298 * 11 9 8 36 36 H 1.09009 * 109.47081 * 59.99887 * 11 9 8 37 37 H 1.09003 * 109.47067 * 179.97438 * 11 9 8 38 38 H 0.97003 * 119.99917 * 0.02562 * 14 12 9 39 39 H 1.09004 * 109.46548 * 60.00539 * 17 15 14 40 40 H 1.09003 * 109.47414 * 179.97438 * 17 15 14 41 41 H 1.09000 * 109.47549 * 300.00558 * 17 15 14 42 42 H 0.97008 * 119.99741 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5804 1.1974 0.0005 5 6 4.2717 0.0000 0.0005 6 6 3.5806 -1.1969 0.0008 7 6 2.1981 -1.1970 0.0058 8 6 1.4446 -2.5020 0.0116 9 6 1.0812 -2.8875 -1.4238 10 1 0.5317 -2.0705 -1.8913 11 6 2.3601 -3.1620 -2.2175 12 6 0.2232 -4.1264 -1.4093 13 8 -0.0691 -4.6492 -0.3548 14 7 -0.2191 -4.6534 -2.5682 15 6 -1.0535 -5.8573 -2.5542 16 1 -0.7346 -6.5109 -1.7421 17 6 -2.5166 -5.4615 -2.3456 18 6 -0.9115 -6.5824 -3.8677 19 1 -0.2647 -6.1857 -4.6362 20 6 -1.6073 -7.7521 -4.0882 21 7 -2.3945 -8.2353 -3.1521 22 14 -1.4318 -8.6503 -5.7166 23 1 -0.4941 -7.9052 -6.5944 24 1 -0.9035 -10.0168 -5.4738 25 1 -2.7590 -8.7428 -6.3765 26 1 -0.3633 -0.0001 -1.0277 27 1 -0.3633 0.8900 0.5138 28 1 -0.3633 -0.8900 0.5139 29 1 1.6583 2.1327 -0.0004 30 1 4.1204 2.1327 0.0001 31 1 5.3517 0.0000 0.0005 32 1 4.1206 -2.1323 0.0012 33 1 2.0694 -3.2804 0.4497 34 1 0.5337 -2.3930 0.6002 35 1 2.9806 -2.2660 -2.2278 36 1 2.9096 -3.9791 -1.7498 37 1 2.1012 -3.4371 -3.2399 38 1 0.0151 -4.2354 -3.4117 39 1 -2.8354 -4.8080 -3.1577 40 1 -3.1375 -6.3573 -2.3356 41 1 -2.6193 -4.9371 -1.3956 42 1 -2.8843 -9.0581 -3.3074 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000599221559.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:02:49 Heat of formation + Delta-G solvation = -57.248366 kcal Electronic energy + Delta-G solvation = -21102.895056 eV Core-core repulsion = 18045.938812 eV Total energy + Delta-G solvation = -3056.956244 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.12577 -40.12347 -36.84911 -35.84234 -34.32735 -33.55808 -31.96231 -30.44662 -28.11371 -27.37271 -27.33530 -24.90018 -22.94919 -22.51677 -21.32610 -20.67684 -18.86785 -17.65276 -17.20253 -16.93127 -16.74497 -16.21046 -15.82523 -15.68014 -15.06889 -14.68089 -14.49299 -14.24555 -13.99691 -13.90037 -13.61661 -13.50169 -13.11769 -13.06714 -12.97152 -12.87988 -12.81037 -12.69283 -12.28960 -12.13066 -12.12664 -11.99766 -11.72783 -11.58815 -11.09515 -10.66641 -10.51509 -9.72947 -9.61963 -9.41063 -8.17949 -6.35485 0.49427 0.54701 1.43997 1.44893 1.57109 1.84497 2.35603 2.62860 2.92927 3.12514 3.75691 3.87569 3.95615 4.09082 4.11249 4.21962 4.30553 4.45917 4.49336 4.60257 4.74833 4.76415 4.82221 4.89389 4.91719 4.92638 4.96861 5.01755 5.09602 5.13884 5.24257 5.29365 5.41789 5.44119 5.62105 5.66313 5.68728 5.69450 5.85356 5.91050 6.10177 6.20198 6.73046 6.98483 7.32424 7.57721 8.88615 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.034514 B = 0.003561 C = 0.003414 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 811.058928 B = 7862.044941 C = 8199.894952 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.093 4.093 3 C -0.126 4.126 4 C -0.125 4.125 5 C -0.130 4.130 6 C -0.120 4.120 7 C -0.088 4.088 8 C -0.057 4.057 9 C -0.090 4.090 10 H 0.109 0.891 11 C -0.138 4.138 12 C 0.501 3.499 13 O -0.601 6.601 14 N -0.704 5.704 15 C 0.269 3.731 16 H -0.003 1.003 17 C -0.133 4.133 18 C -0.546 4.546 19 H 0.073 0.927 20 C 0.013 3.987 21 N -0.918 5.918 22 Si 0.973 3.027 23 H -0.259 1.259 24 H -0.284 1.284 25 H -0.278 1.278 26 H 0.075 0.925 27 H 0.079 0.921 28 H 0.058 0.942 29 H 0.138 0.862 30 H 0.143 0.857 31 H 0.140 0.860 32 H 0.126 0.874 33 H 0.063 0.937 34 H 0.068 0.932 35 H 0.085 0.915 36 H 0.051 0.949 37 H 0.067 0.933 38 H 0.404 0.596 39 H 0.040 0.960 40 H 0.066 0.934 41 H 0.011 0.989 42 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.318 19.415 2.079 22.569 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.094 4.094 3 C -0.144 4.144 4 C -0.143 4.143 5 C -0.148 4.148 6 C -0.138 4.138 7 C -0.088 4.088 8 C -0.094 4.094 9 C -0.111 4.111 10 H 0.127 0.873 11 C -0.195 4.195 12 C 0.288 3.712 13 O -0.484 6.484 14 N -0.353 5.353 15 C 0.166 3.834 16 H 0.014 0.986 17 C -0.192 4.192 18 C -0.584 4.584 19 H 0.091 0.909 20 C -0.187 4.187 21 N -0.557 5.557 22 Si 0.798 3.202 23 H -0.183 1.183 24 H -0.210 1.210 25 H -0.204 1.204 26 H 0.094 0.906 27 H 0.098 0.902 28 H 0.076 0.924 29 H 0.156 0.844 30 H 0.161 0.839 31 H 0.158 0.842 32 H 0.144 0.856 33 H 0.081 0.919 34 H 0.086 0.914 35 H 0.103 0.897 36 H 0.070 0.930 37 H 0.086 0.914 38 H 0.239 0.761 39 H 0.059 0.941 40 H 0.085 0.915 41 H 0.030 0.970 42 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 10.976 18.878 2.837 22.021 hybrid contribution -0.264 -0.896 -0.748 1.197 sum 10.712 17.982 2.088 21.035 Atomic orbital electron populations 1.20911 0.91034 1.03044 1.02823 1.19973 0.96506 0.92883 0.99989 1.21275 0.94810 0.97572 1.00735 1.21439 0.94272 0.98901 0.99660 1.21391 1.00886 0.92163 1.00331 1.21224 0.93277 0.99084 1.00257 1.19689 0.94116 0.93823 1.01201 1.20296 0.99971 0.94198 0.94957 1.21203 0.97098 0.94388 0.98414 0.87263 1.21794 0.95324 1.02783 0.99606 1.21347 0.80065 0.86312 0.83457 1.90620 1.60885 1.64336 1.32511 1.46289 1.51387 1.29154 1.08425 1.18335 0.87132 0.81950 0.96010 0.98559 1.21896 0.99886 1.00560 0.96877 1.21583 1.27794 1.08576 1.00415 0.90853 1.25819 0.94361 0.97808 1.00697 1.70067 1.28942 1.21627 1.35040 0.85282 0.78148 0.77990 0.78824 1.18288 1.20980 1.20417 0.90647 0.90181 0.92362 0.84403 0.83921 0.84194 0.85630 0.91858 0.91384 0.89655 0.93014 0.91408 0.76130 0.94061 0.91544 0.96970 0.92570 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.39 9.41 71.24 0.67 -1.72 16 2 C -0.09 -1.97 5.88 -19.87 -0.12 -2.09 16 3 C -0.13 -2.20 9.70 22.27 0.22 -1.99 16 4 C -0.12 -1.97 10.05 22.27 0.22 -1.75 16 5 C -0.13 -2.19 10.05 22.27 0.22 -1.97 16 6 C -0.12 -2.46 8.33 22.27 0.19 -2.27 16 7 C -0.09 -2.04 4.57 -19.87 -0.09 -2.14 16 8 C -0.06 -1.58 3.67 29.85 0.11 -1.47 16 9 C -0.09 -2.56 2.71 -11.54 -0.03 -2.59 16 10 H 0.11 2.72 7.94 -2.39 -0.02 2.70 16 11 C -0.14 -3.31 8.73 71.98 0.63 -2.68 16 12 C 0.50 20.19 7.12 87.66 0.62 20.81 16 13 O -0.60 -29.91 15.58 -3.02 -0.05 -29.96 16 14 N -0.70 -29.57 4.96 -446.09 -2.21 -31.79 16 15 C 0.27 14.18 2.56 44.25 0.11 14.29 16 16 H 0.00 -0.22 7.58 -2.38 -0.02 -0.24 16 17 C -0.13 -6.87 9.26 71.98 0.67 -6.20 16 18 C -0.55 -29.09 8.73 25.60 0.22 -28.87 16 19 H 0.07 3.65 7.74 -2.92 -0.02 3.62 16 20 C 0.01 0.70 5.30 84.66 0.45 1.15 16 21 N -0.92 -53.15 11.32 21.45 0.24 -52.90 16 22 Si 0.97 42.13 29.54 68.60 2.03 44.15 16 23 H -0.26 -10.56 7.11 99.48 0.71 -9.85 16 24 H -0.28 -12.26 7.11 99.48 0.71 -11.56 16 25 H -0.28 -11.80 7.11 99.48 0.71 -11.09 16 26 H 0.07 1.39 8.14 -2.39 -0.02 1.38 16 27 H 0.08 1.27 8.09 -2.39 -0.02 1.25 16 28 H 0.06 1.33 6.02 -2.38 -0.01 1.32 16 29 H 0.14 1.81 8.06 -2.91 -0.02 1.78 16 30 H 0.14 1.49 8.06 -2.91 -0.02 1.47 16 31 H 0.14 1.70 8.06 -2.91 -0.02 1.67 16 32 H 0.13 2.37 8.06 -2.91 -0.02 2.35 16 33 H 0.06 1.90 8.05 -2.38 -0.02 1.88 16 34 H 0.07 2.10 5.97 -2.39 -0.01 2.09 16 35 H 0.08 1.72 6.50 -2.39 -0.02 1.70 16 36 H 0.05 1.33 8.14 -2.38 -0.02 1.31 16 37 H 0.07 1.55 7.56 -2.39 -0.02 1.53 16 38 H 0.40 14.30 7.95 -92.71 -0.74 13.57 16 39 H 0.04 1.94 8.14 -2.39 -0.02 1.92 16 40 H 0.07 3.74 6.07 -2.39 -0.01 3.72 16 41 H 0.01 0.58 8.14 -2.39 -0.02 0.56 16 42 H 0.27 14.46 8.31 -92.70 -0.77 13.69 16 Total: -1.00 -67.56 341.38 4.37 -63.19 By element: Atomic # 1 Polarization: 26.52 SS G_CDS: 0.27 Total: 26.79 kcal Atomic # 6 Polarization: -23.57 SS G_CDS: 4.09 Total: -19.48 kcal Atomic # 7 Polarization: -82.72 SS G_CDS: -1.97 Total: -84.69 kcal Atomic # 8 Polarization: -29.91 SS G_CDS: -0.05 Total: -29.96 kcal Atomic # 14 Polarization: 42.13 SS G_CDS: 2.03 Total: 44.15 kcal Total: -67.56 4.37 -63.19 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599221559.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.938 kcal (2) G-P(sol) polarization free energy of solvation -67.556 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.619 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.370 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.186 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.248 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds