Wall clock time and date at job start Mon Mar 30 2020 02:02:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38258 * 120.00262 * 2 1 4 4 C 1.38203 * 120.00240 * 179.72475 * 3 2 1 5 5 C 1.38264 * 119.99780 * 0.27482 * 4 3 2 6 6 C 1.38213 * 120.00044 * 359.97438 * 5 4 3 7 7 C 1.38214 * 119.99860 * 180.21267 * 2 1 3 8 8 C 1.50698 * 119.99869 * 0.06556 * 7 2 1 9 9 C 1.53000 * 109.47201 * 274.88852 * 8 7 2 10 10 H 1.08998 * 109.46801 * 54.27538 * 9 8 7 11 11 C 1.52998 * 109.47197 * 294.27445 * 9 8 7 12 12 C 1.50706 * 109.47128 * 174.27617 * 9 8 7 13 13 O 1.21282 * 119.99822 * 359.97438 * 12 9 8 14 14 N 1.34779 * 119.99800 * 180.02562 * 12 9 8 15 15 C 1.46496 * 119.99615 * 179.97438 * 14 12 9 16 16 H 1.08999 * 109.47162 * 35.00088 * 15 14 12 17 17 C 1.52994 * 109.47403 * 274.99746 * 15 14 12 18 18 C 1.50706 * 109.46629 * 155.00032 * 15 14 12 19 19 H 1.07996 * 120.00046 * 0.02562 * 18 15 14 20 20 C 1.37873 * 119.99683 * 180.02562 * 18 15 14 21 21 N 1.31520 * 120.00590 * 359.97438 * 20 18 15 22 22 Si 1.86807 * 119.99970 * 180.02562 * 20 18 15 23 23 H 1.48494 * 109.47532 * 89.99560 * 22 20 18 24 24 H 1.48502 * 109.47025 * 209.99864 * 22 20 18 25 25 H 1.48500 * 109.46752 * 329.99536 * 22 20 18 26 26 H 1.09000 * 109.47407 * 88.71881 * 1 2 3 27 27 H 1.08997 * 109.47388 * 208.72397 * 1 2 3 28 28 H 1.09000 * 109.47011 * 328.72194 * 1 2 3 29 29 H 1.08001 * 119.99803 * 0.02562 * 3 2 1 30 30 H 1.08000 * 120.00459 * 180.25630 * 4 3 2 31 31 H 1.08004 * 119.99767 * 179.97438 * 5 4 3 32 32 H 1.07998 * 120.00133 * 179.97438 * 6 5 4 33 33 H 1.08997 * 109.47543 * 34.89028 * 8 7 2 34 34 H 1.09002 * 109.47028 * 154.88891 * 8 7 2 35 35 H 1.09002 * 109.47210 * 66.70893 * 11 9 8 36 36 H 1.08996 * 109.47366 * 186.70927 * 11 9 8 37 37 H 1.09004 * 109.47050 * 306.71349 * 11 9 8 38 38 H 0.97005 * 119.99741 * 0.02562 * 14 12 9 39 39 H 1.09005 * 109.46813 * 60.00533 * 17 15 14 40 40 H 1.09000 * 109.47286 * 180.02562 * 17 15 14 41 41 H 1.08999 * 109.47241 * 300.00294 * 17 15 14 42 42 H 0.96990 * 120.00421 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1984 1.1973 0.0000 4 6 3.5804 1.1973 0.0057 5 6 4.2717 -0.0001 0.0058 6 6 3.5806 -1.1970 0.0006 7 6 2.1981 -1.1970 -0.0044 8 6 1.4445 -2.5020 -0.0108 9 6 1.0816 -2.8884 1.4245 10 1 0.5436 -2.0666 1.8969 11 6 2.3599 -3.1810 2.2126 12 6 0.2089 -4.1169 1.4086 13 8 -0.0934 -4.6324 0.3532 14 7 -0.2364 -4.6422 2.5672 15 6 -1.0852 -5.8361 2.5517 16 1 -0.7764 -6.4908 1.7368 17 6 -2.5440 -5.4222 2.3487 18 6 -0.9481 -6.5668 3.8626 19 1 -0.2945 -6.1802 4.6305 20 6 -1.6572 -7.7288 4.0815 21 7 -2.4535 -8.1994 3.1465 22 14 -1.4879 -8.6342 5.7067 23 1 -2.5039 -8.1276 6.6638 24 1 -1.6960 -10.0881 5.4873 25 1 -0.1290 -8.4068 6.2607 26 1 -0.3634 0.0230 -1.0274 27 1 -0.3634 -0.9012 0.4939 28 1 -0.3633 0.8783 0.5336 29 1 1.6584 2.1326 0.0004 30 1 4.1205 2.1326 0.0099 31 1 5.3517 -0.0001 0.0098 32 1 4.1205 -2.1324 0.0001 33 1 0.5334 -2.3927 -0.5990 34 1 2.0691 -3.2801 -0.4496 35 1 2.9352 -2.2621 2.3261 36 1 2.0990 -3.5702 3.1967 37 1 2.9564 -3.9191 1.6764 38 1 0.0045 -4.2292 3.4112 39 1 -2.6431 -4.8937 1.4004 40 1 -3.1756 -6.3105 2.3376 41 1 -2.8527 -4.7675 3.1636 42 1 -2.9526 -9.0166 3.3007 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000599221560.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:02:53 Heat of formation + Delta-G solvation = -40.831020 kcal Electronic energy + Delta-G solvation = -21104.674580 eV Core-core repulsion = 18048.430246 eV Total energy + Delta-G solvation = -3056.244334 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -39.97351 -38.79966 -35.15449 -34.45351 -32.78731 -32.33533 -30.85969 -28.66466 -27.22636 -26.41662 -25.25246 -23.50710 -22.05032 -21.04475 -20.06970 -19.13690 -17.19259 -16.39301 -15.81500 -15.61125 -15.30760 -14.83006 -14.53550 -14.43110 -13.75465 -13.34635 -13.22817 -13.09038 -12.82106 -12.53197 -12.38861 -12.11633 -12.06978 -11.86696 -11.65317 -11.20652 -11.13136 -10.98358 -10.89919 -10.81105 -10.70842 -10.67789 -10.30458 -10.22810 -9.03252 -8.94091 -8.82380 -8.56539 -8.51860 -7.86893 -6.11453 -4.20724 1.29914 1.33470 3.24437 3.31292 3.33450 3.44830 3.67424 4.12970 4.38663 4.75689 4.81399 4.93254 4.97846 5.06890 5.19135 5.21225 5.23805 5.37653 5.43874 5.59230 5.62299 5.71214 5.82647 5.88082 5.89648 5.96518 6.09128 6.15601 6.32378 6.37171 6.43858 6.46896 6.69520 6.83992 6.97517 6.98314 7.17026 7.49385 7.58483 7.71150 7.93394 8.16616 8.70565 8.79965 9.17207 9.47207 10.94505 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.034532 B = 0.003562 C = 0.003414 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 810.637225 B = 7859.600693 C = 8198.591100 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.082 4.082 3 C -0.121 4.121 4 C -0.126 4.126 5 C -0.127 4.127 6 C -0.111 4.111 7 C -0.073 4.073 8 C -0.063 4.063 9 C -0.107 4.107 10 H 0.091 0.909 11 C -0.142 4.142 12 C 0.504 3.496 13 O -0.556 6.556 14 N -0.708 5.708 15 C 0.264 3.736 16 H 0.048 0.952 17 C -0.147 4.147 18 C -0.533 4.533 19 H 0.061 0.939 20 C 0.066 3.934 21 N -0.884 5.884 22 Si 0.901 3.099 23 H -0.280 1.280 24 H -0.285 1.285 25 H -0.274 1.274 26 H 0.071 0.929 27 H 0.073 0.927 28 H 0.064 0.936 29 H 0.118 0.882 30 H 0.117 0.883 31 H 0.118 0.882 32 H 0.122 0.878 33 H 0.083 0.917 34 H 0.077 0.923 35 H 0.062 0.938 36 H 0.062 0.938 37 H 0.059 0.941 38 H 0.388 0.612 39 H 0.014 0.986 40 H 0.090 0.910 41 H 0.025 0.975 42 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.901 17.116 -3.727 20.121 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.082 4.082 3 C -0.139 4.139 4 C -0.144 4.144 5 C -0.145 4.145 6 C -0.129 4.129 7 C -0.073 4.073 8 C -0.101 4.101 9 C -0.128 4.128 10 H 0.109 0.891 11 C -0.200 4.200 12 C 0.289 3.711 13 O -0.436 6.436 14 N -0.356 5.356 15 C 0.162 3.838 16 H 0.066 0.934 17 C -0.205 4.205 18 C -0.571 4.571 19 H 0.079 0.921 20 C -0.137 4.137 21 N -0.521 5.521 22 Si 0.728 3.272 23 H -0.206 1.206 24 H -0.211 1.211 25 H -0.199 1.199 26 H 0.089 0.911 27 H 0.092 0.908 28 H 0.083 0.917 29 H 0.136 0.864 30 H 0.135 0.865 31 H 0.136 0.864 32 H 0.140 0.860 33 H 0.101 0.899 34 H 0.096 0.904 35 H 0.081 0.919 36 H 0.081 0.919 37 H 0.078 0.922 38 H 0.220 0.780 39 H 0.033 0.967 40 H 0.108 0.892 41 H 0.045 0.955 42 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 9.527 16.542 -4.506 19.613 hybrid contribution 0.201 -0.255 1.340 1.378 sum 9.727 16.287 -3.166 19.233 Atomic orbital electron populations 1.20902 0.91244 1.03145 1.02550 1.19827 0.96106 0.92592 0.99632 1.20995 0.94248 0.97346 1.01351 1.21068 0.94302 0.97891 1.01151 1.21098 0.99650 0.92591 1.01174 1.21092 0.93653 0.98111 1.00065 1.19855 0.93668 0.94698 0.99079 1.20425 1.00608 0.93230 0.95797 1.21298 0.97136 0.97161 0.97223 0.89122 1.21802 0.96249 1.01892 1.00050 1.20398 0.80729 0.85241 0.84740 1.90645 1.59457 1.62597 1.30867 1.46525 1.51053 1.30961 1.07040 1.18724 0.86180 0.81041 0.97855 0.93430 1.22075 1.00466 1.01449 0.96545 1.21229 1.27005 1.08659 1.00255 0.92122 1.24892 0.94836 0.96937 0.97067 1.69903 1.27442 1.21837 1.32955 0.86457 0.78481 0.78911 0.83305 1.20559 1.21074 1.19856 0.91078 0.90772 0.91671 0.86367 0.86483 0.86386 0.86042 0.89898 0.90409 0.91935 0.91923 0.92156 0.77984 0.96688 0.89192 0.95540 0.92595 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.27 9.24 36.01 0.33 -0.94 16 2 C -0.08 -0.93 5.88 -104.62 -0.62 -1.55 16 3 C -0.12 -1.24 9.71 -39.59 -0.38 -1.62 16 4 C -0.13 -1.21 10.05 -39.58 -0.40 -1.61 16 5 C -0.13 -1.26 10.05 -39.58 -0.40 -1.65 16 6 C -0.11 -1.23 8.54 -39.58 -0.34 -1.57 16 7 C -0.07 -0.88 4.60 -104.63 -0.48 -1.37 16 8 C -0.06 -0.87 3.48 -27.88 -0.10 -0.97 16 9 C -0.11 -1.55 2.44 -91.77 -0.22 -1.77 16 10 H 0.09 1.20 7.08 -51.93 -0.37 0.83 16 11 C -0.14 -1.82 8.62 37.16 0.32 -1.50 16 12 C 0.50 9.96 7.12 -10.98 -0.08 9.88 16 13 O -0.56 -13.21 15.57 5.56 0.09 -13.12 16 14 N -0.71 -14.76 4.92 -54.93 -0.27 -15.03 16 15 C 0.26 6.75 2.56 -69.08 -0.18 6.58 16 16 H 0.05 1.41 7.58 -51.93 -0.39 1.02 16 17 C -0.15 -3.68 9.26 37.15 0.34 -3.34 16 18 C -0.53 -14.18 8.73 -34.44 -0.30 -14.49 16 19 H 0.06 1.54 7.74 -52.49 -0.41 1.13 16 20 C 0.07 1.78 5.30 -17.82 -0.09 1.68 16 21 N -0.88 -25.03 11.32 55.43 0.63 -24.40 16 22 Si 0.90 20.68 29.54 -169.99 -5.02 15.66 16 23 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 24 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 25 H -0.27 -6.18 7.11 56.52 0.40 -5.77 16 26 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 27 H 0.07 0.86 5.47 -51.93 -0.28 0.57 16 28 H 0.06 0.58 8.09 -51.93 -0.42 0.16 16 29 H 0.12 0.97 8.06 -52.49 -0.42 0.55 16 30 H 0.12 0.86 8.06 -52.49 -0.42 0.44 16 31 H 0.12 0.92 8.06 -52.48 -0.42 0.50 16 32 H 0.12 1.22 8.06 -52.49 -0.42 0.80 16 33 H 0.08 1.23 6.75 -51.93 -0.35 0.88 16 34 H 0.08 1.12 8.05 -51.93 -0.42 0.70 16 35 H 0.06 0.70 6.96 -51.93 -0.36 0.34 16 36 H 0.06 0.80 7.39 -51.93 -0.38 0.41 16 37 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 38 H 0.39 7.05 7.89 -40.82 -0.32 6.73 16 39 H 0.01 0.35 8.14 -51.93 -0.42 -0.07 16 40 H 0.09 2.45 6.07 -51.93 -0.32 2.13 16 41 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 42 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 LS Contribution 340.41 15.07 5.13 5.13 Total: -1.00 -30.56 340.41 -8.58 -39.13 By element: Atomic # 1 Polarization: 13.39 SS G_CDS: -6.54 Total: 6.85 kcal Atomic # 6 Polarization: -11.63 SS G_CDS: -2.59 Total: -14.22 kcal Atomic # 7 Polarization: -39.79 SS G_CDS: 0.36 Total: -39.43 kcal Atomic # 8 Polarization: -13.21 SS G_CDS: 0.09 Total: -13.12 kcal Atomic # 14 Polarization: 20.68 SS G_CDS: -5.02 Total: 15.66 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -30.56 -8.58 -39.13 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599221560.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.700 kcal (2) G-P(sol) polarization free energy of solvation -30.556 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.256 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.575 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.131 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.831 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds