Wall clock time and date at job start Mon Mar 30 2020 02:02:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38258 * 120.00262 * 2 1 4 4 C 1.38203 * 120.00240 * 179.72475 * 3 2 1 5 5 C 1.38264 * 119.99780 * 0.27482 * 4 3 2 6 6 C 1.38213 * 120.00044 * 359.97438 * 5 4 3 7 7 C 1.38214 * 119.99860 * 180.21267 * 2 1 3 8 8 C 1.50698 * 119.99869 * 0.06556 * 7 2 1 9 9 C 1.53000 * 109.47201 * 274.88852 * 8 7 2 10 10 H 1.08998 * 109.46801 * 54.27538 * 9 8 7 11 11 C 1.52998 * 109.47197 * 294.27445 * 9 8 7 12 12 C 1.50706 * 109.47128 * 174.27617 * 9 8 7 13 13 O 1.21282 * 119.99822 * 359.97438 * 12 9 8 14 14 N 1.34779 * 119.99800 * 180.02562 * 12 9 8 15 15 C 1.46496 * 119.99615 * 179.97438 * 14 12 9 16 16 H 1.08999 * 109.47162 * 35.00088 * 15 14 12 17 17 C 1.52994 * 109.47403 * 274.99746 * 15 14 12 18 18 C 1.50706 * 109.46629 * 155.00032 * 15 14 12 19 19 H 1.07996 * 120.00046 * 0.02562 * 18 15 14 20 20 C 1.37873 * 119.99683 * 180.02562 * 18 15 14 21 21 N 1.31520 * 120.00590 * 359.97438 * 20 18 15 22 22 Si 1.86807 * 119.99970 * 180.02562 * 20 18 15 23 23 H 1.48494 * 109.47532 * 89.99560 * 22 20 18 24 24 H 1.48502 * 109.47025 * 209.99864 * 22 20 18 25 25 H 1.48500 * 109.46752 * 329.99536 * 22 20 18 26 26 H 1.09000 * 109.47407 * 88.71881 * 1 2 3 27 27 H 1.08997 * 109.47388 * 208.72397 * 1 2 3 28 28 H 1.09000 * 109.47011 * 328.72194 * 1 2 3 29 29 H 1.08001 * 119.99803 * 0.02562 * 3 2 1 30 30 H 1.08000 * 120.00459 * 180.25630 * 4 3 2 31 31 H 1.08004 * 119.99767 * 179.97438 * 5 4 3 32 32 H 1.07998 * 120.00133 * 179.97438 * 6 5 4 33 33 H 1.08997 * 109.47543 * 34.89028 * 8 7 2 34 34 H 1.09002 * 109.47028 * 154.88891 * 8 7 2 35 35 H 1.09002 * 109.47210 * 66.70893 * 11 9 8 36 36 H 1.08996 * 109.47366 * 186.70927 * 11 9 8 37 37 H 1.09004 * 109.47050 * 306.71349 * 11 9 8 38 38 H 0.97005 * 119.99741 * 0.02562 * 14 12 9 39 39 H 1.09005 * 109.46813 * 60.00533 * 17 15 14 40 40 H 1.09000 * 109.47286 * 180.02562 * 17 15 14 41 41 H 1.08999 * 109.47241 * 300.00294 * 17 15 14 42 42 H 0.96990 * 120.00421 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1984 1.1973 0.0000 4 6 3.5804 1.1973 0.0057 5 6 4.2717 -0.0001 0.0058 6 6 3.5806 -1.1970 0.0006 7 6 2.1981 -1.1970 -0.0044 8 6 1.4445 -2.5020 -0.0108 9 6 1.0816 -2.8884 1.4245 10 1 0.5436 -2.0666 1.8969 11 6 2.3599 -3.1810 2.2126 12 6 0.2089 -4.1169 1.4086 13 8 -0.0934 -4.6324 0.3532 14 7 -0.2364 -4.6422 2.5672 15 6 -1.0852 -5.8361 2.5517 16 1 -0.7764 -6.4908 1.7368 17 6 -2.5440 -5.4222 2.3487 18 6 -0.9481 -6.5668 3.8626 19 1 -0.2945 -6.1802 4.6305 20 6 -1.6572 -7.7288 4.0815 21 7 -2.4535 -8.1994 3.1465 22 14 -1.4879 -8.6342 5.7067 23 1 -2.5039 -8.1276 6.6638 24 1 -1.6960 -10.0881 5.4873 25 1 -0.1290 -8.4068 6.2607 26 1 -0.3634 0.0230 -1.0274 27 1 -0.3634 -0.9012 0.4939 28 1 -0.3633 0.8783 0.5336 29 1 1.6584 2.1326 0.0004 30 1 4.1205 2.1326 0.0099 31 1 5.3517 -0.0001 0.0098 32 1 4.1205 -2.1324 0.0001 33 1 0.5334 -2.3927 -0.5990 34 1 2.0691 -3.2801 -0.4496 35 1 2.9352 -2.2621 2.3261 36 1 2.0990 -3.5702 3.1967 37 1 2.9564 -3.9191 1.6764 38 1 0.0045 -4.2292 3.4112 39 1 -2.6431 -4.8937 1.4004 40 1 -3.1756 -6.3105 2.3376 41 1 -2.8527 -4.7675 3.1636 42 1 -2.9526 -9.0166 3.3007 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000599221560.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:02:52 Heat of formation + Delta-G solvation = -57.796062 kcal Electronic energy + Delta-G solvation = -21105.410240 eV Core-core repulsion = 18048.430246 eV Total energy + Delta-G solvation = -3056.979994 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.13544 -40.11955 -36.85226 -35.85608 -34.32762 -33.54356 -31.96860 -30.44952 -28.12134 -27.37138 -27.33116 -24.88999 -22.95003 -22.50288 -21.33811 -20.70384 -18.87680 -17.65264 -17.20578 -16.92219 -16.72967 -16.20222 -15.81545 -15.68309 -15.05172 -14.65705 -14.52322 -14.30989 -13.97428 -13.88660 -13.58360 -13.47755 -13.14931 -13.02226 -12.98040 -12.85790 -12.80127 -12.69546 -12.29940 -12.16771 -12.15356 -11.99997 -11.70378 -11.66627 -11.10421 -10.65916 -10.51366 -9.73075 -9.62562 -9.40192 -8.17722 -6.35485 0.49028 0.54926 1.44616 1.45408 1.56047 1.83945 2.35527 2.62356 2.92395 3.12535 3.76096 3.87095 3.95496 4.09217 4.10075 4.21798 4.31965 4.44915 4.52102 4.58102 4.74799 4.79813 4.81331 4.86634 4.90268 4.91919 4.96197 5.02860 5.09519 5.13964 5.24356 5.30211 5.39626 5.43931 5.61822 5.66572 5.68778 5.69303 5.84270 5.90988 6.10097 6.20055 6.72771 6.98171 7.32388 7.57410 8.88613 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.034532 B = 0.003562 C = 0.003414 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 810.637225 B = 7859.600693 C = 8198.591100 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.094 4.094 3 C -0.126 4.126 4 C -0.125 4.125 5 C -0.130 4.130 6 C -0.120 4.120 7 C -0.088 4.088 8 C -0.055 4.055 9 C -0.091 4.091 10 H 0.110 0.890 11 C -0.137 4.137 12 C 0.500 3.500 13 O -0.601 6.601 14 N -0.704 5.704 15 C 0.270 3.730 16 H -0.003 1.003 17 C -0.133 4.133 18 C -0.547 4.547 19 H 0.073 0.927 20 C 0.013 3.987 21 N -0.918 5.918 22 Si 0.973 3.027 23 H -0.271 1.271 24 H -0.287 1.287 25 H -0.263 1.263 26 H 0.071 0.929 27 H 0.057 0.943 28 H 0.082 0.918 29 H 0.138 0.862 30 H 0.143 0.857 31 H 0.140 0.860 32 H 0.126 0.874 33 H 0.065 0.935 34 H 0.064 0.936 35 H 0.084 0.916 36 H 0.065 0.935 37 H 0.053 0.947 38 H 0.404 0.596 39 H 0.011 0.989 40 H 0.066 0.934 41 H 0.040 0.960 42 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.525 19.262 -2.084 22.543 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.094 4.094 3 C -0.144 4.144 4 C -0.143 4.143 5 C -0.148 4.148 6 C -0.138 4.138 7 C -0.088 4.088 8 C -0.093 4.093 9 C -0.112 4.112 10 H 0.128 0.872 11 C -0.194 4.194 12 C 0.288 3.712 13 O -0.483 6.483 14 N -0.353 5.353 15 C 0.166 3.834 16 H 0.015 0.985 17 C -0.192 4.192 18 C -0.585 4.585 19 H 0.091 0.909 20 C -0.186 4.186 21 N -0.557 5.557 22 Si 0.797 3.203 23 H -0.196 1.196 24 H -0.213 1.213 25 H -0.187 1.187 26 H 0.090 0.910 27 H 0.076 0.924 28 H 0.100 0.900 29 H 0.156 0.844 30 H 0.161 0.839 31 H 0.158 0.842 32 H 0.144 0.856 33 H 0.083 0.917 34 H 0.083 0.917 35 H 0.103 0.897 36 H 0.084 0.916 37 H 0.073 0.927 38 H 0.239 0.761 39 H 0.030 0.970 40 H 0.085 0.915 41 H 0.059 0.941 42 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 11.174 18.725 -2.843 21.990 hybrid contribution -0.281 -0.873 0.742 1.180 sum 10.892 17.852 -2.101 21.018 Atomic orbital electron populations 1.20897 0.91070 1.03108 1.02691 1.19979 0.96467 0.92910 1.00017 1.21270 0.94820 0.97566 1.00746 1.21438 0.94260 0.98912 0.99658 1.21396 1.00890 0.92160 1.00316 1.21226 0.93256 0.99096 1.00221 1.19698 0.94134 0.93797 1.01199 1.20270 0.99888 0.94244 0.94858 1.21244 0.97001 0.94530 0.98463 0.87224 1.21786 0.95199 1.02882 0.99548 1.21350 0.80281 0.86113 0.83472 1.90622 1.61004 1.64249 1.32432 1.46294 1.50713 1.29864 1.08409 1.18328 0.86922 0.82126 0.96004 0.98540 1.21898 0.99964 1.00498 0.96877 1.21554 1.27222 1.09101 1.00600 0.90859 1.25819 0.94362 0.97809 1.00655 1.70055 1.28261 1.22267 1.35095 0.85333 0.78972 0.77159 0.78804 1.19603 1.21258 1.18750 0.91019 0.92389 0.89952 0.84408 0.83916 0.84178 0.85599 0.91658 0.91740 0.89670 0.91643 0.92739 0.76123 0.96977 0.91523 0.94079 0.92557 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.41 9.24 71.24 0.66 -1.75 16 2 C -0.09 -1.99 5.88 -19.86 -0.12 -2.11 16 3 C -0.13 -2.21 9.71 22.27 0.22 -2.00 16 4 C -0.12 -1.97 10.05 22.27 0.22 -1.75 16 5 C -0.13 -2.19 10.05 22.27 0.22 -1.96 16 6 C -0.12 -2.44 8.54 22.27 0.19 -2.25 16 7 C -0.09 -2.05 4.60 -19.87 -0.09 -2.14 16 8 C -0.05 -1.54 3.48 29.85 0.10 -1.43 16 9 C -0.09 -2.60 2.44 -11.54 -0.03 -2.63 16 10 H 0.11 2.75 7.08 -2.39 -0.02 2.74 16 11 C -0.14 -3.28 8.62 71.98 0.62 -2.66 16 12 C 0.50 20.19 7.12 87.66 0.62 20.81 16 13 O -0.60 -29.90 15.57 -3.04 -0.05 -29.95 16 14 N -0.70 -29.61 4.92 -446.10 -2.19 -31.80 16 15 C 0.27 14.21 2.56 44.25 0.11 14.32 16 16 H 0.00 -0.21 7.58 -2.39 -0.02 -0.22 16 17 C -0.13 -6.88 9.26 71.98 0.67 -6.22 16 18 C -0.55 -29.16 8.73 25.60 0.22 -28.94 16 19 H 0.07 3.64 7.74 -2.91 -0.02 3.61 16 20 C 0.01 0.73 5.30 84.65 0.45 1.18 16 21 N -0.92 -53.17 11.32 21.45 0.24 -52.93 16 22 Si 0.97 42.11 29.54 68.60 2.03 44.13 16 23 H -0.27 -11.28 7.11 99.48 0.71 -10.57 16 24 H -0.29 -12.41 7.11 99.48 0.71 -11.70 16 25 H -0.26 -10.87 7.11 99.48 0.71 -10.16 16 26 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 27 H 0.06 1.32 5.47 -2.39 -0.01 1.31 16 28 H 0.08 1.31 8.09 -2.39 -0.02 1.29 16 29 H 0.14 1.81 8.06 -2.91 -0.02 1.79 16 30 H 0.14 1.49 8.06 -2.91 -0.02 1.47 16 31 H 0.14 1.69 8.06 -2.91 -0.02 1.67 16 32 H 0.13 2.36 8.06 -2.91 -0.02 2.34 16 33 H 0.06 2.03 6.75 -2.39 -0.02 2.01 16 34 H 0.06 1.93 8.05 -2.39 -0.02 1.91 16 35 H 0.08 1.70 6.96 -2.39 -0.02 1.68 16 36 H 0.06 1.54 7.39 -2.39 -0.02 1.52 16 37 H 0.05 1.37 8.14 -2.38 -0.02 1.35 16 38 H 0.40 14.32 7.89 -92.70 -0.73 13.59 16 39 H 0.01 0.57 8.14 -2.38 -0.02 0.56 16 40 H 0.07 3.75 6.07 -2.39 -0.01 3.74 16 41 H 0.04 1.93 8.14 -2.39 -0.02 1.91 16 42 H 0.27 14.51 8.31 -92.72 -0.77 13.74 16 Total: -1.00 -67.52 340.41 4.38 -63.14 By element: Atomic # 1 Polarization: 26.65 SS G_CDS: 0.27 Total: 26.93 kcal Atomic # 6 Polarization: -23.60 SS G_CDS: 4.08 Total: -19.52 kcal Atomic # 7 Polarization: -82.78 SS G_CDS: -1.95 Total: -84.73 kcal Atomic # 8 Polarization: -29.90 SS G_CDS: -0.05 Total: -29.95 kcal Atomic # 14 Polarization: 42.11 SS G_CDS: 2.03 Total: 44.13 kcal Total: -67.52 4.38 -63.14 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599221560.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.342 kcal (2) G-P(sol) polarization free energy of solvation -67.516 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.174 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.378 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.138 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.796 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds