Wall clock time and date at job start Mon Mar 30 2020 01:27:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86807 * 119.99748 * 2 1 4 4 H 1.48502 * 109.47008 * 270.00339 * 3 2 1 5 5 H 1.48491 * 109.47176 * 30.00315 * 3 2 1 6 6 H 1.48495 * 109.46916 * 150.00419 * 3 2 1 7 7 C 1.38812 * 120.00061 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99510 * 204.35482 * 7 2 1 9 9 N 1.36930 * 119.99979 * 24.35552 * 7 2 1 10 10 C 1.46500 * 120.00190 * 34.57854 * 9 7 2 11 11 C 1.50706 * 109.46655 * 94.42118 * 10 9 7 12 12 C 1.38232 * 119.99783 * 96.21310 * 11 10 9 13 13 C 1.38234 * 119.99681 * 179.97438 * 12 11 10 14 14 C 1.38236 * 120.00258 * 0.02562 * 13 12 11 15 15 C 1.38233 * 119.99872 * 0.25933 * 14 13 12 16 16 C 1.38234 * 119.99824 * 276.22656 * 11 10 9 17 17 C 1.46502 * 119.99891 * 214.58176 * 9 7 2 18 18 C 1.53005 * 110.43369 * 290.74371 * 17 9 7 19 19 O 1.42895 * 109.47249 * 301.63607 * 18 17 9 20 20 C 1.54893 * 110.48854 * 168.06139 * 17 9 7 21 21 C 1.54888 * 102.74704 * 279.26342 * 20 17 9 22 22 C 1.54270 * 104.19762 * 322.05790 * 21 20 17 23 23 C 1.53877 * 106.59737 * 23.60950 * 22 21 20 24 24 H 0.97004 * 119.99848 * 359.97438 * 1 2 3 25 25 H 1.08997 * 109.47306 * 334.42020 * 10 9 7 26 26 H 1.09003 * 109.47230 * 214.41624 * 10 9 7 27 27 H 1.07995 * 120.00542 * 359.97438 * 12 11 10 28 28 H 1.08007 * 120.00235 * 179.97438 * 13 12 11 29 29 H 1.08001 * 119.99954 * 179.97438 * 14 13 12 30 30 H 1.07999 * 120.00010 * 179.72704 * 15 14 13 31 31 H 1.07993 * 120.00110 * 0.02562 * 16 11 10 32 32 H 1.09000 * 109.47168 * 61.63853 * 18 17 9 33 33 H 1.08995 * 109.47052 * 181.63404 * 18 17 9 34 34 H 0.96701 * 114.00298 * 179.97438 * 19 18 17 35 35 H 1.08995 * 110.75315 * 37.57535 * 20 17 9 36 36 H 1.08996 * 110.75545 * 160.94696 * 20 17 9 37 37 H 1.08996 * 110.48713 * 203.37575 * 21 20 17 38 38 H 1.09001 * 110.48584 * 80.73365 * 21 20 17 39 39 H 1.08995 * 110.02864 * 264.32753 * 22 21 20 40 40 H 1.08998 * 110.03583 * 142.89257 * 22 21 20 41 41 H 1.08998 * 110.03148 * 240.71725 * 23 22 21 42 42 H 1.08996 * 110.03201 * 119.28634 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4976 2.0466 -1.4001 5 1 1.4477 2.6527 0.7001 6 1 3.5477 1.4403 0.6999 7 6 2.0103 -1.2021 -0.0005 8 1 3.0183 -1.2438 0.3852 9 7 1.4170 -2.3350 -0.4901 10 6 0.4924 -2.2467 -1.6230 11 6 1.2425 -2.5038 -2.9046 12 6 1.2456 -3.7689 -3.4616 13 6 1.9332 -4.0047 -4.6375 14 6 2.6180 -2.9754 -5.2560 15 6 2.6197 -1.7117 -4.6959 16 6 1.9275 -1.4746 -3.5230 17 6 1.7069 -3.6354 0.1192 18 6 3.1486 -4.0541 -0.1760 19 8 3.3475 -4.1135 -1.5898 20 6 0.7126 -4.7074 -0.3922 21 6 -0.5410 -4.4554 0.4819 22 6 0.0306 -4.1070 1.8718 23 6 1.4599 -3.5857 1.6411 24 1 -0.4850 0.8401 0.0004 25 1 0.0502 -1.2509 -1.6543 26 1 -0.2957 -2.9908 -1.5077 27 1 0.7110 -4.5732 -2.9783 28 1 1.9360 -4.9932 -5.0725 29 1 3.1555 -3.1597 -6.1745 30 1 3.1583 -0.9086 -5.1767 31 1 1.9255 -0.4864 -3.0874 32 1 3.8344 -3.3259 0.2571 33 1 3.3383 -5.0353 0.2592 34 1 4.2418 -4.3729 -1.8507 35 1 0.4857 -4.5519 -1.4469 36 1 1.1055 -5.7101 -0.2242 37 1 -1.1550 -5.3543 0.5363 38 1 -1.1197 -3.6203 0.0872 39 1 0.0549 -4.9978 2.4994 40 1 -0.5772 -3.3344 2.3426 41 1 2.1777 -4.2234 2.1569 42 1 1.5457 -2.5601 2.0000 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000599433616.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:27:32 Heat of formation + Delta-G solvation = 2.805104 kcal Electronic energy + Delta-G solvation = -23198.061009 eV Core-core repulsion = 20143.708879 eV Total energy + Delta-G solvation = -3054.352130 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -39.03664 -37.78394 -35.32910 -34.08988 -31.49393 -30.39714 -30.03882 -28.17441 -27.94150 -25.18798 -23.66670 -22.71702 -21.67189 -20.35658 -19.70261 -18.29985 -16.46350 -16.44353 -15.85275 -15.45116 -14.75293 -14.38094 -14.15593 -13.96193 -13.73733 -13.32545 -12.96689 -12.63723 -12.37414 -12.22297 -11.77141 -11.62931 -11.19381 -11.08776 -10.89228 -10.69738 -10.50443 -10.42228 -10.32309 -10.06814 -10.01883 -9.82212 -9.72895 -9.66600 -9.53689 -9.03160 -8.40962 -8.02164 -7.72379 -6.54315 -5.78793 -3.26712 2.29661 2.31026 3.36274 3.44738 3.46177 4.46358 4.70547 4.99010 5.28591 5.35351 5.50145 5.55580 5.63961 5.68985 5.73527 5.81643 6.01918 6.06676 6.12008 6.17226 6.28750 6.36208 6.38695 6.44116 6.48070 6.61349 6.63996 6.69985 6.74107 6.85315 6.94640 7.00658 7.04275 7.09042 7.29679 7.34547 7.38214 7.60964 7.80387 7.85117 7.96392 8.39495 8.53283 9.20710 9.85905 10.44848 11.21418 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.012712 B = 0.010978 C = 0.007213 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2202.083035 B = 2549.909276 C = 3880.688623 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.880 5.880 2 C 0.013 3.987 3 Si 0.887 3.113 4 H -0.286 1.286 5 H -0.293 1.293 6 H -0.279 1.279 7 C -0.242 4.242 8 H 0.056 0.944 9 N -0.548 5.548 10 C 0.172 3.828 11 C -0.055 4.055 12 C -0.101 4.101 13 C -0.128 4.128 14 C -0.147 4.147 15 C -0.132 4.132 16 C -0.099 4.099 17 C 0.203 3.797 18 C 0.073 3.927 19 O -0.542 6.542 20 C -0.133 4.133 21 C -0.120 4.120 22 C -0.109 4.109 23 C -0.123 4.123 24 H 0.254 0.746 25 H 0.098 0.902 26 H 0.039 0.961 27 H 0.109 0.891 28 H 0.102 0.898 29 H 0.101 0.899 30 H 0.103 0.897 31 H 0.113 0.887 32 H 0.035 0.965 33 H 0.021 0.979 34 H 0.353 0.647 35 H 0.083 0.917 36 H 0.053 0.947 37 H 0.047 0.953 38 H 0.073 0.927 39 H 0.044 0.956 40 H 0.058 0.942 41 H 0.041 0.959 42 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.427 -8.419 -3.169 9.318 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C -0.188 4.188 3 Si 0.717 3.283 4 H -0.213 1.213 5 H -0.219 1.219 6 H -0.205 1.205 7 C -0.372 4.372 8 H 0.074 0.926 9 N -0.266 5.266 10 C 0.046 3.954 11 C -0.057 4.057 12 C -0.119 4.119 13 C -0.147 4.147 14 C -0.165 4.165 15 C -0.150 4.150 16 C -0.118 4.118 17 C 0.114 3.886 18 C -0.007 4.007 19 O -0.343 6.343 20 C -0.170 4.170 21 C -0.158 4.158 22 C -0.147 4.147 23 C -0.162 4.162 24 H 0.064 0.936 25 H 0.116 0.884 26 H 0.057 0.943 27 H 0.127 0.873 28 H 0.120 0.880 29 H 0.120 0.880 30 H 0.121 0.879 31 H 0.131 0.869 32 H 0.054 0.946 33 H 0.039 0.961 34 H 0.196 0.804 35 H 0.101 0.899 36 H 0.071 0.929 37 H 0.065 0.935 38 H 0.092 0.908 39 H 0.063 0.937 40 H 0.077 0.923 41 H 0.060 0.940 42 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 1.636 -8.079 -3.086 8.802 hybrid contribution 1.396 0.735 0.068 1.579 sum 3.032 -7.344 -3.018 8.499 Atomic orbital electron populations 1.70048 1.05374 1.25610 1.51190 1.24989 0.94836 0.98330 1.00617 0.86533 0.79600 0.84282 0.77863 1.21348 1.21930 1.20470 1.18842 0.95139 0.86180 1.37030 0.92637 1.43508 1.52384 1.00740 1.29983 1.20080 0.90405 1.03006 0.81918 1.21071 0.96464 0.92229 0.95984 1.20937 0.99473 0.96479 0.95037 1.20847 0.99322 0.97727 0.96773 1.20763 1.01947 0.93757 1.00042 1.20965 1.00532 0.96432 0.97053 1.21002 0.96857 0.99515 0.94401 1.20492 0.90029 0.86976 0.91086 1.22724 0.99718 0.96487 0.81759 1.86753 1.33247 1.92242 1.22079 1.22953 0.95746 0.97409 1.00916 1.22340 0.97422 1.00153 0.95836 1.21927 0.97026 0.99047 0.96707 1.22413 0.95005 1.02210 0.96576 0.93632 0.88423 0.94254 0.87310 0.88025 0.88043 0.87886 0.86932 0.94633 0.96081 0.80387 0.89863 0.92860 0.93458 0.90844 0.93730 0.92277 0.93998 0.89603 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -23.94 11.52 55.49 0.64 -23.30 16 2 C 0.01 0.33 4.86 -17.43 -0.08 0.25 16 3 Si 0.89 21.09 29.62 -169.99 -5.03 16.06 16 4 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 5 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 6 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 7 C -0.24 -6.19 7.83 -15.06 -0.12 -6.31 16 8 H 0.06 1.47 7.40 -52.48 -0.39 1.08 16 9 N -0.55 -12.55 2.23 -157.92 -0.35 -12.90 16 10 C 0.17 3.90 4.76 -5.19 -0.02 3.88 16 11 C -0.05 -1.14 4.58 -104.62 -0.48 -1.62 16 12 C -0.10 -1.87 7.53 -39.59 -0.30 -2.17 16 13 C -0.13 -2.16 10.05 -39.58 -0.40 -2.56 16 14 C -0.15 -2.45 10.05 -39.58 -0.40 -2.85 16 15 C -0.13 -2.41 10.05 -39.58 -0.40 -2.80 16 16 C -0.10 -2.08 9.73 -39.58 -0.39 -2.46 16 17 C 0.20 4.03 0.62 -130.15 -0.08 3.95 16 18 C 0.07 1.34 5.79 37.16 0.22 1.56 16 19 O -0.54 -9.79 10.67 -35.23 -0.38 -10.17 16 20 C -0.13 -2.38 5.12 -24.74 -0.13 -2.51 16 21 C -0.12 -2.11 6.49 -25.07 -0.16 -2.28 16 22 C -0.11 -1.94 6.80 -25.61 -0.17 -2.11 16 23 C -0.12 -2.38 5.97 -25.61 -0.15 -2.53 16 24 H 0.25 6.77 8.31 -40.82 -0.34 6.43 16 25 H 0.10 2.53 5.45 -51.93 -0.28 2.25 16 26 H 0.04 0.86 4.41 -51.93 -0.23 0.64 16 27 H 0.11 1.94 5.58 -52.49 -0.29 1.65 16 28 H 0.10 1.46 8.06 -52.48 -0.42 1.04 16 29 H 0.10 1.43 8.06 -52.49 -0.42 1.01 16 30 H 0.10 1.67 8.06 -52.49 -0.42 1.25 16 31 H 0.11 2.56 8.06 -52.49 -0.42 2.14 16 32 H 0.04 0.69 7.54 -51.93 -0.39 0.30 16 33 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 34 H 0.35 5.05 9.12 45.56 0.42 5.47 16 35 H 0.08 1.54 2.71 -51.93 -0.14 1.40 16 36 H 0.05 0.88 8.06 -51.93 -0.42 0.46 16 37 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 38 H 0.07 1.46 6.77 -51.93 -0.35 1.11 16 39 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 40 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 41 H 0.04 0.72 7.84 -51.93 -0.41 0.31 16 42 H 0.09 1.92 6.86 -51.93 -0.36 1.57 16 LS Contribution 320.41 15.07 4.83 4.83 Total: -1.00 -27.41 320.41 -8.72 -36.13 By element: Atomic # 1 Polarization: 15.29 SS G_CDS: -5.36 Total: 9.93 kcal Atomic # 6 Polarization: -17.50 SS G_CDS: -3.06 Total: -20.57 kcal Atomic # 7 Polarization: -36.50 SS G_CDS: 0.29 Total: -36.21 kcal Atomic # 8 Polarization: -9.79 SS G_CDS: -0.38 Total: -10.17 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.03 Total: 16.06 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -27.41 -8.72 -36.13 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599433616.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.935 kcal (2) G-P(sol) polarization free energy of solvation -27.410 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.525 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.720 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.130 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.805 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds