Wall clock time and date at job start Mon Mar 30 2020 01:27:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86807 * 119.99748 * 2 1 4 4 H 1.48502 * 109.47008 * 270.00339 * 3 2 1 5 5 H 1.48491 * 109.47176 * 30.00315 * 3 2 1 6 6 H 1.48495 * 109.46916 * 150.00419 * 3 2 1 7 7 C 1.38812 * 120.00061 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99510 * 204.35482 * 7 2 1 9 9 N 1.36930 * 119.99979 * 24.35552 * 7 2 1 10 10 C 1.46500 * 120.00190 * 34.57854 * 9 7 2 11 11 C 1.50706 * 109.46655 * 94.42118 * 10 9 7 12 12 C 1.38232 * 119.99783 * 96.21310 * 11 10 9 13 13 C 1.38234 * 119.99681 * 179.97438 * 12 11 10 14 14 C 1.38236 * 120.00258 * 0.02562 * 13 12 11 15 15 C 1.38233 * 119.99872 * 0.25933 * 14 13 12 16 16 C 1.38234 * 119.99824 * 276.22656 * 11 10 9 17 17 C 1.46502 * 119.99891 * 214.58176 * 9 7 2 18 18 C 1.53005 * 110.43369 * 290.74371 * 17 9 7 19 19 O 1.42895 * 109.47249 * 301.63607 * 18 17 9 20 20 C 1.54893 * 110.48854 * 168.06139 * 17 9 7 21 21 C 1.54888 * 102.74704 * 279.26342 * 20 17 9 22 22 C 1.54270 * 104.19762 * 322.05790 * 21 20 17 23 23 C 1.53877 * 106.59737 * 23.60950 * 22 21 20 24 24 H 0.97004 * 119.99848 * 359.97438 * 1 2 3 25 25 H 1.08997 * 109.47306 * 334.42020 * 10 9 7 26 26 H 1.09003 * 109.47230 * 214.41624 * 10 9 7 27 27 H 1.07995 * 120.00542 * 359.97438 * 12 11 10 28 28 H 1.08007 * 120.00235 * 179.97438 * 13 12 11 29 29 H 1.08001 * 119.99954 * 179.97438 * 14 13 12 30 30 H 1.07999 * 120.00010 * 179.72704 * 15 14 13 31 31 H 1.07993 * 120.00110 * 0.02562 * 16 11 10 32 32 H 1.09000 * 109.47168 * 61.63853 * 18 17 9 33 33 H 1.08995 * 109.47052 * 181.63404 * 18 17 9 34 34 H 0.96701 * 114.00298 * 179.97438 * 19 18 17 35 35 H 1.08995 * 110.75315 * 37.57535 * 20 17 9 36 36 H 1.08996 * 110.75545 * 160.94696 * 20 17 9 37 37 H 1.08996 * 110.48713 * 203.37575 * 21 20 17 38 38 H 1.09001 * 110.48584 * 80.73365 * 21 20 17 39 39 H 1.08995 * 110.02864 * 264.32753 * 22 21 20 40 40 H 1.08998 * 110.03583 * 142.89257 * 22 21 20 41 41 H 1.08998 * 110.03148 * 240.71725 * 23 22 21 42 42 H 1.08996 * 110.03201 * 119.28634 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4976 2.0466 -1.4001 5 1 1.4477 2.6527 0.7001 6 1 3.5477 1.4403 0.6999 7 6 2.0103 -1.2021 -0.0005 8 1 3.0183 -1.2438 0.3852 9 7 1.4170 -2.3350 -0.4901 10 6 0.4924 -2.2467 -1.6230 11 6 1.2425 -2.5038 -2.9046 12 6 1.2456 -3.7689 -3.4616 13 6 1.9332 -4.0047 -4.6375 14 6 2.6180 -2.9754 -5.2560 15 6 2.6197 -1.7117 -4.6959 16 6 1.9275 -1.4746 -3.5230 17 6 1.7069 -3.6354 0.1192 18 6 3.1486 -4.0541 -0.1760 19 8 3.3475 -4.1135 -1.5898 20 6 0.7126 -4.7074 -0.3922 21 6 -0.5410 -4.4554 0.4819 22 6 0.0306 -4.1070 1.8718 23 6 1.4599 -3.5857 1.6411 24 1 -0.4850 0.8401 0.0004 25 1 0.0502 -1.2509 -1.6543 26 1 -0.2957 -2.9908 -1.5077 27 1 0.7110 -4.5732 -2.9783 28 1 1.9360 -4.9932 -5.0725 29 1 3.1555 -3.1597 -6.1745 30 1 3.1583 -0.9086 -5.1767 31 1 1.9255 -0.4864 -3.0874 32 1 3.8344 -3.3259 0.2571 33 1 3.3383 -5.0353 0.2592 34 1 4.2418 -4.3729 -1.8507 35 1 0.4857 -4.5519 -1.4469 36 1 1.1055 -5.7101 -0.2242 37 1 -1.1550 -5.3543 0.5363 38 1 -1.1197 -3.6203 0.0872 39 1 0.0549 -4.9978 2.4994 40 1 -0.5772 -3.3344 2.3426 41 1 2.1777 -4.2234 2.1569 42 1 1.5457 -2.5601 2.0000 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000599433616.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:27:31 Heat of formation + Delta-G solvation = -12.351887 kcal Electronic energy + Delta-G solvation = -23198.718265 eV Core-core repulsion = 20143.708879 eV Total energy + Delta-G solvation = -3055.009387 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.58203 -39.24569 -36.74729 -35.83742 -33.26612 -32.01448 -31.48714 -29.70726 -29.48399 -26.97821 -25.16492 -24.45163 -23.11997 -21.86336 -21.16508 -19.99415 -18.18581 -17.89701 -17.40311 -17.04681 -16.45428 -15.89963 -15.75896 -15.48600 -15.21773 -15.12323 -14.46959 -14.11672 -13.86306 -13.76672 -13.33341 -13.23697 -12.91127 -12.81284 -12.65721 -12.31335 -12.23630 -12.01125 -11.83485 -11.69254 -11.61066 -11.50723 -11.23495 -11.14750 -11.09472 -10.48981 -10.37308 -9.46805 -9.21710 -8.44705 -7.76002 -5.26449 0.84308 0.86013 1.40484 1.45339 1.50169 2.51974 3.17811 3.31800 3.60554 3.78853 4.00046 4.13164 4.22669 4.30956 4.36603 4.46130 4.51295 4.61046 4.67505 4.73570 4.78220 4.85212 4.92496 4.94976 5.03731 5.09339 5.17870 5.22472 5.26540 5.35977 5.45588 5.50528 5.56223 5.56602 5.72440 5.76513 5.83481 5.88611 5.96153 6.23192 6.46834 6.57322 7.17560 7.25043 8.00595 8.52178 9.19292 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.012712 B = 0.010978 C = 0.007213 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2202.083035 B = 2549.909276 C = 3880.688623 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.907 5.907 2 C -0.030 4.030 3 Si 0.932 3.068 4 H -0.292 1.292 5 H -0.296 1.296 6 H -0.275 1.275 7 C -0.232 4.232 8 H 0.042 0.958 9 N -0.555 5.555 10 C 0.180 3.820 11 C -0.069 4.069 12 C -0.101 4.101 13 C -0.119 4.119 14 C -0.137 4.137 15 C -0.135 4.135 16 C -0.127 4.127 17 C 0.189 3.811 18 C 0.081 3.919 19 O -0.554 6.554 20 C -0.125 4.125 21 C -0.116 4.116 22 C -0.106 4.106 23 C -0.123 4.123 24 H 0.247 0.753 25 H 0.058 0.942 26 H 0.041 0.959 27 H 0.118 0.882 28 H 0.138 0.862 29 H 0.138 0.862 30 H 0.120 0.880 31 H 0.077 0.923 32 H 0.014 0.986 33 H 0.053 0.947 34 H 0.371 0.629 35 H 0.077 0.923 36 H 0.080 0.920 37 H 0.078 0.922 38 H 0.039 0.961 39 H 0.078 0.922 40 H 0.036 0.964 41 H 0.067 0.933 42 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.658 -11.581 -4.532 12.963 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.552 5.552 2 C -0.227 4.227 3 Si 0.763 3.237 4 H -0.219 1.219 5 H -0.223 1.223 6 H -0.200 1.200 7 C -0.363 4.363 8 H 0.060 0.940 9 N -0.274 5.274 10 C 0.054 3.946 11 C -0.072 4.072 12 C -0.120 4.120 13 C -0.137 4.137 14 C -0.155 4.155 15 C -0.153 4.153 16 C -0.146 4.146 17 C 0.101 3.899 18 C 0.001 3.999 19 O -0.358 6.358 20 C -0.162 4.162 21 C -0.154 4.154 22 C -0.144 4.144 23 C -0.162 4.162 24 H 0.056 0.944 25 H 0.076 0.924 26 H 0.060 0.940 27 H 0.136 0.864 28 H 0.156 0.844 29 H 0.156 0.844 30 H 0.138 0.862 31 H 0.096 0.904 32 H 0.032 0.968 33 H 0.071 0.929 34 H 0.216 0.784 35 H 0.095 0.905 36 H 0.098 0.902 37 H 0.097 0.903 38 H 0.058 0.942 39 H 0.097 0.903 40 H 0.055 0.945 41 H 0.086 0.914 42 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 2.896 -11.260 -4.455 12.451 hybrid contribution 1.058 1.636 0.429 1.995 sum 3.954 -9.624 -4.027 11.156 Atomic orbital electron populations 1.70150 1.06274 1.25379 1.53366 1.25429 0.95304 1.00314 1.01684 0.85804 0.78762 0.81908 0.77271 1.21907 1.22336 1.20006 1.18850 0.94431 0.87458 1.35566 0.94011 1.43579 1.51953 1.01304 1.30527 1.19813 0.90723 1.00746 0.83333 1.20813 0.97180 0.93550 0.95628 1.21005 0.99777 0.95361 0.95809 1.21231 0.97562 0.99388 0.95553 1.21161 1.00990 0.92555 1.00769 1.21163 0.99978 0.98138 0.95984 1.20879 0.99227 0.98225 0.96315 1.20792 0.91797 0.86072 0.91227 1.22547 0.97792 0.97395 0.82146 1.86704 1.34882 1.92449 1.21741 1.22909 0.95031 0.97829 1.00415 1.22290 0.97498 1.00225 0.95380 1.21914 0.95497 0.99687 0.97279 1.22387 0.96881 1.00375 0.96577 0.94357 0.92427 0.94038 0.86410 0.84443 0.84377 0.86225 0.90441 0.96752 0.92900 0.78361 0.90453 0.90164 0.90299 0.94207 0.90329 0.94512 0.91407 0.93752 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -52.38 11.52 21.65 0.25 -52.13 16 2 C -0.03 -1.65 4.86 84.86 0.41 -1.23 16 3 Si 0.93 45.42 29.62 68.60 2.03 47.45 16 4 H -0.29 -14.29 7.11 99.48 0.71 -13.58 16 5 H -0.30 -14.51 7.11 99.48 0.71 -13.80 16 6 H -0.27 -13.03 7.11 99.48 0.71 -12.33 16 7 C -0.23 -12.40 7.83 84.03 0.66 -11.74 16 8 H 0.04 2.32 7.40 -2.91 -0.02 2.30 16 9 N -0.55 -26.12 2.23 -653.54 -1.46 -27.58 16 10 C 0.18 8.48 4.76 85.63 0.41 8.88 16 11 C -0.07 -2.90 4.58 -19.87 -0.09 -2.99 16 12 C -0.10 -3.53 7.53 22.27 0.17 -3.36 16 13 C -0.12 -3.52 10.05 22.27 0.22 -3.29 16 14 C -0.14 -4.01 10.05 22.27 0.22 -3.79 16 15 C -0.13 -4.71 10.05 22.27 0.22 -4.48 16 16 C -0.13 -5.46 9.73 22.27 0.22 -5.25 16 17 C 0.19 7.35 0.62 4.68 0.00 7.35 16 18 C 0.08 2.82 5.79 71.98 0.42 3.23 16 19 O -0.55 -18.67 10.67 -148.98 -1.59 -20.25 16 20 C -0.12 -4.18 5.12 31.89 0.16 -4.02 16 21 C -0.12 -3.93 6.49 31.67 0.21 -3.73 16 22 C -0.11 -3.64 6.80 31.32 0.21 -3.42 16 23 C -0.12 -4.69 5.97 31.32 0.19 -4.50 16 24 H 0.25 14.02 8.31 -92.71 -0.77 13.25 16 25 H 0.06 3.20 5.45 -2.39 -0.01 3.19 16 26 H 0.04 1.88 4.41 -2.39 -0.01 1.87 16 27 H 0.12 3.88 5.58 -2.91 -0.02 3.86 16 28 H 0.14 3.12 8.06 -2.91 -0.02 3.10 16 29 H 0.14 3.10 8.06 -2.91 -0.02 3.08 16 30 H 0.12 3.69 8.06 -2.91 -0.02 3.66 16 31 H 0.08 3.78 8.06 -2.91 -0.02 3.75 16 32 H 0.01 0.55 7.54 -2.39 -0.02 0.53 16 33 H 0.05 1.51 8.14 -2.39 -0.02 1.49 16 34 H 0.37 9.48 9.12 -74.06 -0.68 8.80 16 35 H 0.08 2.71 2.71 -2.39 -0.01 2.71 16 36 H 0.08 2.28 8.06 -2.39 -0.02 2.26 16 37 H 0.08 2.16 8.14 -2.39 -0.02 2.14 16 38 H 0.04 1.60 6.77 -2.39 -0.02 1.59 16 39 H 0.08 2.16 8.14 -2.39 -0.02 2.14 16 40 H 0.04 1.40 8.14 -2.39 -0.02 1.38 16 41 H 0.07 2.18 7.84 -2.39 -0.02 2.17 16 42 H 0.04 2.05 6.86 -2.39 -0.02 2.03 16 Total: -1.00 -62.46 320.41 3.21 -59.25 By element: Atomic # 1 Polarization: 25.25 SS G_CDS: 0.35 Total: 25.60 kcal Atomic # 6 Polarization: -35.96 SS G_CDS: 3.63 Total: -32.33 kcal Atomic # 7 Polarization: -78.50 SS G_CDS: -1.21 Total: -79.71 kcal Atomic # 8 Polarization: -18.67 SS G_CDS: -1.59 Total: -20.25 kcal Atomic # 14 Polarization: 45.42 SS G_CDS: 2.03 Total: 47.45 kcal Total: -62.46 3.21 -59.25 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599433616.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.899 kcal (2) G-P(sol) polarization free energy of solvation -62.463 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.564 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.212 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.251 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.352 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds