Wall clock time and date at job start Mon Mar 30 2020 02:02:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.38260 * 120.00543 * 2 1 4 4 C 1.38205 * 120.00239 * 180.27464 * 3 2 1 5 5 C 1.38256 * 120.00174 * 359.75381 * 4 3 2 6 6 C 1.38210 * 119.99918 * 359.97034 * 5 4 3 7 7 C 1.38218 * 120.00299 * 179.75198 * 2 1 3 8 8 C 1.50699 * 119.99465 * 359.97438 * 7 2 1 9 9 C 1.53006 * 109.47053 * 84.73124 * 8 7 2 10 10 H 1.09001 * 109.47002 * 304.99539 * 9 8 7 11 11 C 1.52997 * 109.47164 * 64.99801 * 9 8 7 12 12 C 1.50698 * 109.47184 * 185.00135 * 9 8 7 13 13 O 1.21282 * 120.00025 * 359.97438 * 12 9 8 14 14 N 1.34776 * 120.00035 * 180.02562 * 12 9 8 15 15 C 1.46504 * 119.99735 * 179.97438 * 14 12 9 16 16 C 1.53006 * 109.46883 * 179.97438 * 15 14 12 17 17 C 1.50690 * 109.47292 * 179.97438 * 16 15 14 18 18 H 1.08005 * 119.99710 * 359.97438 * 17 16 15 19 19 C 1.37876 * 120.00510 * 179.97438 * 17 16 15 20 20 N 1.31518 * 119.99589 * 359.97438 * 19 17 16 21 21 Si 1.86798 * 120.00335 * 180.02562 * 19 17 16 22 22 H 1.48492 * 109.47227 * 59.99933 * 21 19 17 23 23 H 1.48506 * 109.46961 * 180.02562 * 21 19 17 24 24 H 1.48503 * 109.46926 * 299.99724 * 21 19 17 25 25 H 1.09003 * 109.47082 * 270.24850 * 1 2 3 26 26 H 1.08998 * 109.46971 * 30.24536 * 1 2 3 27 27 H 1.08992 * 109.47448 * 150.25027 * 1 2 3 28 28 H 1.08004 * 119.99400 * 0.05288 * 3 2 1 29 29 H 1.08009 * 119.99805 * 179.76875 * 4 3 2 30 30 H 1.08003 * 119.99781 * 179.97438 * 5 4 3 31 31 H 1.08000 * 120.00084 * 180.02562 * 6 5 4 32 32 H 1.08997 * 109.47516 * 324.72591 * 8 7 2 33 33 H 1.09004 * 109.47523 * 204.72662 * 8 7 2 34 34 H 1.09002 * 109.46777 * 180.02562 * 11 9 8 35 35 H 1.09000 * 109.47140 * 299.99948 * 11 9 8 36 36 H 1.09001 * 109.47375 * 59.99966 * 11 9 8 37 37 H 0.96998 * 119.99962 * 359.97438 * 14 12 9 38 38 H 1.08998 * 109.47135 * 299.99021 * 15 14 12 39 39 H 1.08993 * 109.47378 * 60.00104 * 15 14 12 40 40 H 1.09001 * 109.46998 * 300.00055 * 16 15 14 41 41 H 1.08996 * 109.46884 * 59.99171 * 16 15 14 42 42 H 0.96997 * 119.99752 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1984 1.1973 0.0000 4 6 3.5804 1.1972 -0.0057 5 6 4.2717 -0.0001 -0.0063 6 6 3.5806 -1.1970 -0.0006 7 6 2.1981 -1.1970 0.0052 8 6 1.4445 -2.5020 0.0114 9 6 1.0743 -2.8840 -1.4232 10 1 0.5225 -2.0658 -1.8861 11 6 2.3493 -3.1566 -2.2237 12 6 0.2163 -4.1228 -1.4077 13 8 -0.0704 -4.6487 -0.3531 14 7 -0.2316 -4.6469 -2.5658 15 6 -1.0652 -5.8515 -2.5506 16 6 -1.4356 -6.2334 -3.9852 17 6 -2.2925 -7.4729 -3.9698 18 1 -2.5471 -7.9416 -3.0307 19 6 -2.7515 -8.0085 -5.1545 20 7 -2.4419 -7.4374 -6.2980 21 14 -3.8143 -9.5445 -5.1353 22 1 -5.0516 -9.2807 -4.3577 23 1 -4.1737 -9.9152 -6.5277 24 1 -3.0620 -10.6592 -4.5053 25 1 -0.3633 0.0045 1.0277 26 1 -0.3633 0.8878 -0.5176 27 1 -0.3634 -0.8921 -0.5099 28 1 1.6583 2.1326 0.0009 29 1 4.1204 2.1326 -0.0095 30 1 5.3517 -0.0001 -0.0112 31 1 4.1206 -2.1323 -0.0006 32 1 0.5365 -2.3945 0.6047 33 1 2.0714 -3.2815 0.4446 34 1 2.0854 -3.4282 -3.2458 35 1 2.9698 -2.2605 -2.2349 36 1 2.9010 -3.9748 -1.7607 37 1 -0.0020 -4.2264 -3.4092 38 1 -0.5133 -6.6695 -2.0876 39 1 -1.9737 -5.6576 -1.9806 40 1 -1.9876 -5.4153 -4.4480 41 1 -0.5272 -6.4271 -4.5557 42 1 -2.7645 -7.8144 -7.1314 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000599750994.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:02:27 Heat of formation + Delta-G solvation = -47.810446 kcal Electronic energy + Delta-G solvation = -20517.114975 eV Core-core repulsion = 17460.567990 eV Total energy + Delta-G solvation = -3056.546985 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.16777 -39.08872 -35.21028 -34.69846 -32.96115 -32.74898 -31.07949 -29.40319 -27.38725 -26.57794 -25.06915 -23.19845 -22.12307 -21.04180 -20.59147 -19.46932 -17.05656 -16.39883 -16.25958 -15.89051 -15.29423 -15.03425 -14.94029 -14.49630 -13.97177 -13.91785 -13.46313 -13.26990 -13.14017 -12.75612 -12.57697 -12.30596 -12.26574 -12.20075 -12.02473 -11.36355 -11.21317 -11.15519 -11.01954 -10.94765 -10.87469 -10.65798 -10.31953 -9.76653 -9.43601 -9.16428 -8.93075 -8.67486 -8.53358 -8.34524 -6.09751 -4.12696 1.19333 1.23362 3.02775 3.30813 3.34595 3.37502 3.53565 3.76097 4.41153 4.64704 4.65638 4.80678 4.83135 4.86957 4.99166 5.06340 5.21148 5.27168 5.31206 5.43377 5.49179 5.51867 5.67380 5.71908 5.75100 5.76987 5.93409 6.02180 6.13436 6.19098 6.33991 6.35020 6.35265 6.37037 6.56633 6.74036 6.87172 6.94089 7.51225 7.61376 7.88369 8.03444 8.27636 8.67270 8.93181 9.52113 11.01830 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.040607 B = 0.002832 C = 0.002811 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 689.372983 B = 9884.836134 C = 9958.625976 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.081 4.081 3 C -0.121 4.121 4 C -0.124 4.124 5 C -0.127 4.127 6 C -0.111 4.111 7 C -0.076 4.076 8 C -0.063 4.063 9 C -0.106 4.106 10 H 0.095 0.905 11 C -0.145 4.145 12 C 0.508 3.492 13 O -0.552 6.552 14 N -0.721 5.721 15 C 0.121 3.879 16 C 0.013 3.987 17 C -0.522 4.522 18 H 0.059 0.941 19 C 0.059 3.941 20 N -0.895 5.895 21 Si 0.897 3.103 22 H -0.276 1.276 23 H -0.287 1.287 24 H -0.276 1.276 25 H 0.071 0.929 26 H 0.065 0.935 27 H 0.072 0.928 28 H 0.119 0.881 29 H 0.118 0.882 30 H 0.119 0.881 31 H 0.122 0.878 32 H 0.083 0.917 33 H 0.078 0.922 34 H 0.062 0.938 35 H 0.067 0.933 36 H 0.060 0.940 37 H 0.397 0.603 38 H 0.055 0.945 39 H 0.055 0.945 40 H 0.022 0.978 41 H 0.022 0.978 42 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.926 17.550 10.062 23.484 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.081 4.081 3 C -0.139 4.139 4 C -0.142 4.142 5 C -0.145 4.145 6 C -0.129 4.129 7 C -0.076 4.076 8 C -0.101 4.101 9 C -0.127 4.127 10 H 0.113 0.887 11 C -0.203 4.203 12 C 0.294 3.706 13 O -0.430 6.430 14 N -0.371 5.371 15 C -0.001 4.001 16 C -0.024 4.024 17 C -0.561 4.561 18 H 0.077 0.923 19 C -0.143 4.143 20 N -0.533 5.533 21 Si 0.725 3.275 22 H -0.201 1.201 23 H -0.212 1.212 24 H -0.201 1.201 25 H 0.090 0.910 26 H 0.084 0.916 27 H 0.091 0.909 28 H 0.137 0.863 29 H 0.136 0.864 30 H 0.137 0.863 31 H 0.140 0.860 32 H 0.101 0.899 33 H 0.097 0.903 34 H 0.081 0.919 35 H 0.086 0.914 36 H 0.079 0.921 37 H 0.231 0.769 38 H 0.074 0.926 39 H 0.074 0.926 40 H 0.040 0.960 41 H 0.040 0.960 42 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 11.668 17.123 10.609 23.279 hybrid contribution -0.411 -0.577 -0.594 0.925 sum 11.256 16.546 10.015 22.378 Atomic orbital electron populations 1.20901 0.91231 1.03111 1.02591 1.19824 0.96096 0.92599 0.99593 1.21013 0.94265 0.97384 1.01202 1.21091 0.94308 0.97958 1.00852 1.21107 0.99723 0.92570 1.01057 1.21085 0.93607 0.98148 1.00072 1.19798 0.93659 0.94551 0.99568 1.20416 1.00693 0.93490 0.95461 1.21290 0.97193 0.96597 0.97664 0.88670 1.21830 0.96221 1.02430 0.99799 1.20528 0.80365 0.85515 0.84207 1.90665 1.58895 1.62593 1.30863 1.46345 1.52389 1.30140 1.08214 1.21714 0.92729 0.84256 1.01416 1.19312 0.97093 0.97060 0.88970 1.21019 1.31646 1.10548 0.92900 0.92323 1.24997 0.96318 0.97492 0.95467 1.69946 1.45520 1.40351 0.97517 0.86570 0.80822 0.83140 0.76993 1.20101 1.21233 1.20109 0.91037 0.91566 0.90909 0.86282 0.86389 0.86308 0.86024 0.89870 0.90336 0.91873 0.91415 0.92064 0.76924 0.92631 0.92634 0.95981 0.95980 0.92784 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.11 9.22 36.00 0.33 -0.78 16 2 C -0.08 -0.82 5.88 -104.62 -0.62 -1.44 16 3 C -0.12 -1.10 9.70 -39.59 -0.38 -1.49 16 4 C -0.12 -1.07 10.05 -39.59 -0.40 -1.47 16 5 C -0.13 -1.12 10.05 -39.59 -0.40 -1.51 16 6 C -0.11 -1.08 8.36 -39.59 -0.33 -1.41 16 7 C -0.08 -0.80 4.56 -104.62 -0.48 -1.28 16 8 C -0.06 -0.75 3.47 -27.88 -0.10 -0.84 16 9 C -0.11 -1.30 2.46 -91.77 -0.23 -1.52 16 10 H 0.10 1.06 7.00 -51.93 -0.36 0.69 16 11 C -0.15 -1.56 8.74 37.16 0.32 -1.23 16 12 C 0.51 8.45 7.15 -10.99 -0.08 8.38 16 13 O -0.55 -11.19 15.92 5.56 0.09 -11.10 16 14 N -0.72 -12.52 5.45 -60.29 -0.33 -12.85 16 15 C 0.12 2.58 5.61 -4.04 -0.02 2.56 16 16 C 0.01 0.32 5.09 -27.88 -0.14 0.18 16 17 C -0.52 -14.53 9.11 -34.45 -0.31 -14.84 16 18 H 0.06 1.60 7.74 -52.48 -0.41 1.19 16 19 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 20 N -0.89 -26.15 13.29 55.43 0.74 -25.41 16 21 Si 0.90 21.40 29.54 -169.99 -5.02 16.38 16 22 H -0.28 -6.48 7.11 56.52 0.40 -6.07 16 23 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 24 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 25 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 26 H 0.07 0.51 8.09 -51.93 -0.42 0.09 16 27 H 0.07 0.72 5.46 -51.93 -0.28 0.43 16 28 H 0.12 0.87 8.06 -52.48 -0.42 0.45 16 29 H 0.12 0.77 8.06 -52.48 -0.42 0.35 16 30 H 0.12 0.81 8.06 -52.48 -0.42 0.39 16 31 H 0.12 1.05 8.06 -52.49 -0.42 0.63 16 32 H 0.08 1.06 6.82 -51.93 -0.35 0.71 16 33 H 0.08 0.97 8.05 -51.93 -0.42 0.55 16 34 H 0.06 0.66 7.56 -51.93 -0.39 0.26 16 35 H 0.07 0.65 6.52 -51.93 -0.34 0.31 16 36 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 37 H 0.40 6.02 7.89 -40.82 -0.32 5.70 16 38 H 0.06 1.24 8.14 -51.93 -0.42 0.81 16 39 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 40 H 0.02 0.57 8.14 -51.93 -0.42 0.14 16 41 H 0.02 0.57 8.14 -51.93 -0.42 0.14 16 42 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 LS Contribution 344.94 15.07 5.20 5.20 Total: -1.00 -31.47 344.94 -8.91 -40.39 By element: Atomic # 1 Polarization: 9.20 SS G_CDS: -6.66 Total: 2.53 kcal Atomic # 6 Polarization: -12.21 SS G_CDS: -2.92 Total: -15.14 kcal Atomic # 7 Polarization: -38.67 SS G_CDS: 0.41 Total: -38.26 kcal Atomic # 8 Polarization: -11.19 SS G_CDS: 0.09 Total: -11.10 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.38 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -31.47 -8.91 -40.39 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599750994.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.424 kcal (2) G-P(sol) polarization free energy of solvation -31.475 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.899 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.911 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.386 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.810 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds