Wall clock time and date at job start Mon Mar 30 2020 02:02:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.38260 * 120.00543 * 2 1 4 4 C 1.38205 * 120.00239 * 180.27464 * 3 2 1 5 5 C 1.38256 * 120.00174 * 359.75381 * 4 3 2 6 6 C 1.38210 * 119.99918 * 359.97034 * 5 4 3 7 7 C 1.38218 * 120.00299 * 179.75198 * 2 1 3 8 8 C 1.50699 * 119.99465 * 359.97438 * 7 2 1 9 9 C 1.53006 * 109.47053 * 84.73124 * 8 7 2 10 10 H 1.09001 * 109.47002 * 304.99539 * 9 8 7 11 11 C 1.52997 * 109.47164 * 64.99801 * 9 8 7 12 12 C 1.50698 * 109.47184 * 185.00135 * 9 8 7 13 13 O 1.21282 * 120.00025 * 359.97438 * 12 9 8 14 14 N 1.34776 * 120.00035 * 180.02562 * 12 9 8 15 15 C 1.46504 * 119.99735 * 179.97438 * 14 12 9 16 16 C 1.53006 * 109.46883 * 179.97438 * 15 14 12 17 17 C 1.50690 * 109.47292 * 179.97438 * 16 15 14 18 18 H 1.08005 * 119.99710 * 359.97438 * 17 16 15 19 19 C 1.37876 * 120.00510 * 179.97438 * 17 16 15 20 20 N 1.31518 * 119.99589 * 359.97438 * 19 17 16 21 21 Si 1.86798 * 120.00335 * 180.02562 * 19 17 16 22 22 H 1.48492 * 109.47227 * 59.99933 * 21 19 17 23 23 H 1.48506 * 109.46961 * 180.02562 * 21 19 17 24 24 H 1.48503 * 109.46926 * 299.99724 * 21 19 17 25 25 H 1.09003 * 109.47082 * 270.24850 * 1 2 3 26 26 H 1.08998 * 109.46971 * 30.24536 * 1 2 3 27 27 H 1.08992 * 109.47448 * 150.25027 * 1 2 3 28 28 H 1.08004 * 119.99400 * 0.05288 * 3 2 1 29 29 H 1.08009 * 119.99805 * 179.76875 * 4 3 2 30 30 H 1.08003 * 119.99781 * 179.97438 * 5 4 3 31 31 H 1.08000 * 120.00084 * 180.02562 * 6 5 4 32 32 H 1.08997 * 109.47516 * 324.72591 * 8 7 2 33 33 H 1.09004 * 109.47523 * 204.72662 * 8 7 2 34 34 H 1.09002 * 109.46777 * 180.02562 * 11 9 8 35 35 H 1.09000 * 109.47140 * 299.99948 * 11 9 8 36 36 H 1.09001 * 109.47375 * 59.99966 * 11 9 8 37 37 H 0.96998 * 119.99962 * 359.97438 * 14 12 9 38 38 H 1.08998 * 109.47135 * 299.99021 * 15 14 12 39 39 H 1.08993 * 109.47378 * 60.00104 * 15 14 12 40 40 H 1.09001 * 109.46998 * 300.00055 * 16 15 14 41 41 H 1.08996 * 109.46884 * 59.99171 * 16 15 14 42 42 H 0.96997 * 119.99752 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1984 1.1973 0.0000 4 6 3.5804 1.1972 -0.0057 5 6 4.2717 -0.0001 -0.0063 6 6 3.5806 -1.1970 -0.0006 7 6 2.1981 -1.1970 0.0052 8 6 1.4445 -2.5020 0.0114 9 6 1.0743 -2.8840 -1.4232 10 1 0.5225 -2.0658 -1.8861 11 6 2.3493 -3.1566 -2.2237 12 6 0.2163 -4.1228 -1.4077 13 8 -0.0704 -4.6487 -0.3531 14 7 -0.2316 -4.6469 -2.5658 15 6 -1.0652 -5.8515 -2.5506 16 6 -1.4356 -6.2334 -3.9852 17 6 -2.2925 -7.4729 -3.9698 18 1 -2.5471 -7.9416 -3.0307 19 6 -2.7515 -8.0085 -5.1545 20 7 -2.4419 -7.4374 -6.2980 21 14 -3.8143 -9.5445 -5.1353 22 1 -5.0516 -9.2807 -4.3577 23 1 -4.1737 -9.9152 -6.5277 24 1 -3.0620 -10.6592 -4.5053 25 1 -0.3633 0.0045 1.0277 26 1 -0.3633 0.8878 -0.5176 27 1 -0.3634 -0.8921 -0.5099 28 1 1.6583 2.1326 0.0009 29 1 4.1204 2.1326 -0.0095 30 1 5.3517 -0.0001 -0.0112 31 1 4.1206 -2.1323 -0.0006 32 1 0.5365 -2.3945 0.6047 33 1 2.0714 -3.2815 0.4446 34 1 2.0854 -3.4282 -3.2458 35 1 2.9698 -2.2605 -2.2349 36 1 2.9010 -3.9748 -1.7607 37 1 -0.0020 -4.2264 -3.4092 38 1 -0.5133 -6.6695 -2.0876 39 1 -1.9737 -5.6576 -1.9806 40 1 -1.9876 -5.4153 -4.4480 41 1 -0.5272 -6.4271 -4.5557 42 1 -2.7645 -7.8144 -7.1314 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000599750994.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:02:26 Heat of formation + Delta-G solvation = -65.299146 kcal Electronic energy + Delta-G solvation = -20517.873342 eV Core-core repulsion = 17460.567990 eV Total energy + Delta-G solvation = -3057.305352 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.22011 -40.16800 -36.70028 -35.93496 -34.82481 -33.57577 -32.14660 -31.04835 -28.16709 -27.38236 -26.91112 -24.47367 -22.94928 -22.69983 -21.58822 -20.67084 -18.60619 -18.10580 -17.06101 -16.83787 -16.76768 -16.46804 -16.27311 -15.74455 -15.22903 -15.05253 -14.55559 -14.35544 -14.27023 -13.96237 -13.72920 -13.50075 -13.24449 -13.18148 -13.02336 -12.92144 -12.79274 -12.55770 -12.25587 -12.18926 -12.04473 -11.72367 -11.68865 -11.64865 -11.47194 -10.70177 -10.60712 -10.00938 -9.63339 -9.41334 -8.24746 -6.35422 0.47876 0.54038 1.41254 1.43490 1.51530 1.65963 2.26108 2.45349 2.90118 3.09859 3.64149 3.85027 3.92434 4.06135 4.07358 4.19604 4.29874 4.36259 4.48103 4.50866 4.53734 4.58783 4.79579 4.79964 4.84237 4.84806 4.88636 4.95577 5.02107 5.11930 5.22275 5.28454 5.30410 5.38827 5.49388 5.57399 5.65746 5.68247 5.78077 5.82495 6.15622 6.19144 6.63101 6.77657 7.28274 7.33920 8.86895 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.040607 B = 0.002832 C = 0.002811 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 689.372983 B = 9884.836134 C = 9958.625976 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.094 4.094 3 C -0.128 4.128 4 C -0.126 4.126 5 C -0.131 4.131 6 C -0.120 4.120 7 C -0.089 4.089 8 C -0.056 4.056 9 C -0.093 4.093 10 H 0.111 0.889 11 C -0.141 4.141 12 C 0.509 3.491 13 O -0.589 6.589 14 N -0.717 5.717 15 C 0.140 3.860 16 C 0.024 3.976 17 C -0.549 4.549 18 H 0.058 0.942 19 C 0.008 3.992 20 N -0.926 5.926 21 Si 0.965 3.035 22 H -0.268 1.268 23 H -0.280 1.280 24 H -0.269 1.269 25 H 0.072 0.928 26 H 0.079 0.921 27 H 0.060 0.940 28 H 0.136 0.864 29 H 0.141 0.859 30 H 0.139 0.861 31 H 0.128 0.872 32 H 0.069 0.931 33 H 0.068 0.932 34 H 0.067 0.933 35 H 0.083 0.917 36 H 0.056 0.944 37 H 0.409 0.591 38 H 0.045 0.955 39 H 0.045 0.955 40 H 0.008 0.992 41 H 0.008 0.992 42 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.683 18.623 10.115 24.698 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.094 4.094 3 C -0.145 4.145 4 C -0.143 4.143 5 C -0.149 4.149 6 C -0.137 4.137 7 C -0.089 4.089 8 C -0.093 4.093 9 C -0.114 4.114 10 H 0.129 0.871 11 C -0.198 4.198 12 C 0.296 3.704 13 O -0.470 6.470 14 N -0.368 5.368 15 C 0.016 3.984 16 C -0.014 4.014 17 C -0.587 4.587 18 H 0.076 0.924 19 C -0.191 4.191 20 N -0.566 5.566 21 Si 0.789 3.211 22 H -0.193 1.193 23 H -0.205 1.205 24 H -0.194 1.194 25 H 0.091 0.909 26 H 0.098 0.902 27 H 0.079 0.921 28 H 0.154 0.846 29 H 0.159 0.841 30 H 0.157 0.843 31 H 0.146 0.854 32 H 0.087 0.913 33 H 0.087 0.913 34 H 0.086 0.914 35 H 0.102 0.898 36 H 0.075 0.925 37 H 0.245 0.755 38 H 0.063 0.937 39 H 0.063 0.937 40 H 0.027 0.973 41 H 0.027 0.973 42 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 12.441 18.220 10.657 24.501 hybrid contribution -0.606 -0.846 -0.583 1.193 sum 11.835 17.374 10.073 23.311 Atomic orbital electron populations 1.20901 0.90959 1.03184 1.02735 1.19990 0.96525 0.92903 0.99934 1.21276 0.94802 0.97669 1.00795 1.21434 0.94311 0.98926 0.99671 1.21396 1.00885 0.92243 1.00351 1.21239 0.93322 0.99057 1.00130 1.19700 0.94079 0.93889 1.01240 1.20287 1.00100 0.94228 0.94717 1.21262 0.97148 0.94354 0.98658 0.87070 1.21823 0.95376 1.03088 0.99552 1.21307 0.79819 0.86206 0.83024 1.90647 1.60246 1.63967 1.32145 1.46182 1.52020 1.29135 1.09414 1.21212 0.92790 0.85587 0.98788 1.19119 0.95833 0.95811 0.90609 1.21446 1.32380 1.11748 0.93154 0.92381 1.25870 0.97534 1.00692 0.95028 1.70050 1.46509 1.41881 0.98128 0.85507 0.79101 0.79180 0.77324 1.19340 1.20518 1.19356 0.90925 0.90178 0.92079 0.84578 0.84124 0.84289 0.85382 0.91288 0.91293 0.91415 0.89781 0.92462 0.75464 0.93700 0.93675 0.97345 0.97325 0.92501 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.10 9.22 71.23 0.66 -1.44 16 2 C -0.09 -1.77 5.88 -19.87 -0.12 -1.88 16 3 C -0.13 -2.05 9.70 22.27 0.22 -1.83 16 4 C -0.13 -1.82 10.05 22.27 0.22 -1.60 16 5 C -0.13 -1.99 10.05 22.27 0.22 -1.77 16 6 C -0.12 -2.14 8.36 22.27 0.19 -1.95 16 7 C -0.09 -1.80 4.56 -19.87 -0.09 -1.89 16 8 C -0.06 -1.31 3.47 29.85 0.10 -1.20 16 9 C -0.09 -2.21 2.46 -11.54 -0.03 -2.24 16 10 H 0.11 2.33 7.00 -2.39 -0.02 2.31 16 11 C -0.14 -2.83 8.74 71.98 0.63 -2.20 16 12 C 0.51 16.96 7.15 87.66 0.63 17.59 16 13 O -0.59 -24.36 15.92 -3.04 -0.05 -24.40 16 14 N -0.72 -24.97 5.45 -463.05 -2.52 -27.49 16 15 C 0.14 6.09 5.61 86.38 0.48 6.57 16 16 C 0.02 1.20 5.09 29.85 0.15 1.35 16 17 C -0.55 -30.85 9.11 25.60 0.23 -30.62 16 18 H 0.06 3.19 7.74 -2.91 -0.02 3.17 16 19 C 0.01 0.43 5.46 84.65 0.46 0.89 16 20 N -0.93 -54.39 13.29 21.45 0.28 -54.11 16 21 Si 0.96 43.69 29.54 68.60 2.03 45.71 16 22 H -0.27 -11.78 7.11 99.48 0.71 -11.08 16 23 H -0.28 -12.29 7.11 99.48 0.71 -11.58 16 24 H -0.27 -11.79 7.11 99.48 0.71 -11.09 16 25 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 26 H 0.08 1.12 8.09 -2.39 -0.02 1.10 16 27 H 0.06 1.18 5.46 -2.39 -0.01 1.17 16 28 H 0.14 1.64 8.06 -2.91 -0.02 1.62 16 29 H 0.14 1.35 8.06 -2.91 -0.02 1.33 16 30 H 0.14 1.49 8.06 -2.91 -0.02 1.46 16 31 H 0.13 2.03 8.06 -2.91 -0.02 2.01 16 32 H 0.07 1.80 6.82 -2.39 -0.02 1.78 16 33 H 0.07 1.72 8.05 -2.39 -0.02 1.70 16 34 H 0.07 1.30 7.56 -2.39 -0.02 1.28 16 35 H 0.08 1.45 6.52 -2.39 -0.02 1.43 16 36 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 37 H 0.41 12.26 7.89 -92.71 -0.73 11.53 16 38 H 0.04 2.04 8.14 -2.39 -0.02 2.02 16 39 H 0.04 2.05 8.14 -2.39 -0.02 2.03 16 40 H 0.01 0.44 8.14 -2.39 -0.02 0.42 16 41 H 0.01 0.45 8.14 -2.39 -0.02 0.43 16 42 H 0.27 14.70 8.31 -92.71 -0.77 13.93 16 Total: -1.00 -67.13 344.94 3.97 -63.16 By element: Atomic # 1 Polarization: 19.07 SS G_CDS: 0.27 Total: 19.34 kcal Atomic # 6 Polarization: -26.17 SS G_CDS: 3.96 Total: -22.21 kcal Atomic # 7 Polarization: -79.36 SS G_CDS: -2.24 Total: -81.60 kcal Atomic # 8 Polarization: -24.36 SS G_CDS: -0.05 Total: -24.40 kcal Atomic # 14 Polarization: 43.69 SS G_CDS: 2.03 Total: 45.71 kcal Total: -67.13 3.97 -63.16 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599750994.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.139 kcal (2) G-P(sol) polarization free energy of solvation -67.130 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.269 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.970 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.160 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.299 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds