Wall clock time and date at job start Mon Mar 30 2020 02:02:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.38253 * 120.00638 * 2 1 4 4 C 1.38210 * 120.00061 * 179.97438 * 3 2 1 5 5 C 1.38255 * 120.00549 * 0.02583 * 4 3 2 6 6 C 1.38218 * 119.99703 * 359.95494 * 5 4 3 7 7 C 1.38224 * 119.99545 * 179.72453 * 2 1 3 8 8 C 1.50703 * 119.99841 * 359.97438 * 7 2 1 9 9 C 1.52996 * 109.47157 * 277.75877 * 8 7 2 10 10 H 1.08997 * 109.47182 * 54.78554 * 9 8 7 11 11 C 1.53004 * 109.46789 * 294.78884 * 9 8 7 12 12 C 1.50699 * 109.47217 * 174.79215 * 9 8 7 13 13 O 1.21285 * 119.99609 * 359.97438 * 12 9 8 14 14 N 1.34775 * 120.00037 * 180.02562 * 12 9 8 15 15 C 1.46498 * 119.99951 * 179.97438 * 14 12 9 16 16 C 1.52995 * 109.47466 * 179.97438 * 15 14 12 17 17 C 1.50699 * 109.47552 * 180.02562 * 16 15 14 18 18 H 1.08001 * 120.00070 * 359.97438 * 17 16 15 19 19 C 1.37878 * 119.99931 * 180.02562 * 17 16 15 20 20 N 1.31512 * 120.00108 * 359.97438 * 19 17 16 21 21 Si 1.86801 * 119.99562 * 180.02562 * 19 17 16 22 22 H 1.48490 * 109.47634 * 59.99533 * 21 19 17 23 23 H 1.48502 * 109.46836 * 179.97438 * 21 19 17 24 24 H 1.48501 * 109.46785 * 299.99123 * 21 19 17 25 25 H 1.09000 * 109.47394 * 85.10736 * 1 2 3 26 26 H 1.09004 * 109.46989 * 325.11386 * 1 2 3 27 27 H 1.08997 * 109.47620 * 205.11035 * 1 2 3 28 28 H 1.08003 * 119.99660 * 0.02562 * 3 2 1 29 29 H 1.08005 * 119.99967 * 179.97438 * 4 3 2 30 30 H 1.07998 * 120.00442 * 179.97438 * 5 4 3 31 31 H 1.07994 * 120.00131 * 180.02562 * 6 5 4 32 32 H 1.09002 * 109.46844 * 37.75815 * 8 7 2 33 33 H 1.09004 * 109.46439 * 157.75633 * 8 7 2 34 34 H 1.09009 * 109.46665 * 175.52525 * 11 9 8 35 35 H 1.09000 * 109.47430 * 295.51955 * 11 9 8 36 36 H 1.09001 * 109.47044 * 55.52654 * 11 9 8 37 37 H 0.96998 * 120.00181 * 359.97438 * 14 12 9 38 38 H 1.09001 * 109.46896 * 299.99903 * 15 14 12 39 39 H 1.09002 * 109.47175 * 59.99706 * 15 14 12 40 40 H 1.09001 * 109.47206 * 299.99985 * 16 15 14 41 41 H 1.09002 * 109.46940 * 59.99835 * 16 15 14 42 42 H 0.97000 * 119.99795 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1983 1.1972 0.0000 4 6 3.5804 1.1971 0.0005 5 6 4.2717 -0.0002 0.0005 6 6 3.5805 -1.1972 0.0009 7 6 2.1980 -1.1971 0.0058 8 6 1.4443 -2.5021 0.0126 9 6 1.0212 -2.8392 1.4437 10 1 0.4566 -2.0057 1.8616 11 6 2.2656 -3.0912 2.2975 12 6 0.1594 -4.0754 1.4348 13 8 -0.0920 -4.6318 0.3869 14 7 -0.3328 -4.5621 2.5913 15 6 -1.1710 -5.7636 2.5825 16 6 -1.5940 -6.1008 4.0136 17 6 -2.4558 -7.3371 4.0047 18 1 -2.6797 -7.8325 3.0716 19 6 -2.9592 -7.8350 5.1878 20 7 -2.6869 -7.2315 6.3241 21 14 -4.0267 -9.3679 5.1767 22 1 -3.2569 -10.5033 4.6083 23 1 -4.4374 -9.6951 6.5658 24 1 -5.2343 -9.1241 4.3475 25 1 -0.3634 0.0876 -1.0239 26 1 -0.3633 0.8430 0.5878 27 1 -0.3634 -0.9305 0.4361 28 1 1.6584 2.1326 0.0004 29 1 4.1205 2.1324 0.0001 30 1 5.3517 -0.0003 0.0005 31 1 4.1204 -2.1325 0.0013 32 1 0.5588 -2.4136 -0.6168 33 1 2.0863 -3.2943 -0.3727 34 1 1.9686 -3.2529 3.3338 35 1 2.7877 -3.9735 1.9273 36 1 2.9270 -2.2266 2.2398 37 1 -0.1320 -4.1170 3.4293 38 1 -2.0573 -5.5838 1.9741 39 1 -0.6066 -6.5974 2.1649 40 1 -0.7075 -6.2807 4.6218 41 1 -2.1583 -5.2671 4.4316 42 1 -3.0408 -7.5820 7.1564 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000599750995.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:02:30 Heat of formation + Delta-G solvation = -65.022810 kcal Electronic energy + Delta-G solvation = -20524.316785 eV Core-core repulsion = 17467.023416 eV Total energy + Delta-G solvation = -3057.293369 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.22636 -40.16773 -36.70230 -35.94151 -34.82491 -33.55800 -32.15601 -31.05580 -28.16093 -27.39055 -26.91155 -24.47103 -22.94748 -22.70224 -21.58930 -20.67297 -18.60683 -18.10568 -17.06389 -16.84345 -16.76431 -16.46749 -16.27587 -15.74033 -15.23018 -15.06277 -14.55850 -14.35606 -14.27215 -13.96301 -13.72958 -13.50446 -13.24998 -13.18889 -13.00889 -12.91941 -12.78678 -12.55772 -12.25504 -12.18800 -12.04030 -11.72140 -11.69436 -11.64754 -11.47179 -10.70208 -10.60729 -10.00971 -9.63488 -9.41266 -8.24714 -6.35390 0.47858 0.53844 1.41275 1.43501 1.51536 1.65916 2.26120 2.45361 2.90041 3.09898 3.63682 3.84392 3.92995 4.05796 4.07232 4.19422 4.29933 4.36229 4.48084 4.50419 4.53836 4.58625 4.79542 4.80023 4.84293 4.84865 4.88742 4.95155 5.02039 5.12110 5.22261 5.27894 5.30417 5.39146 5.49410 5.57437 5.65543 5.68155 5.78079 5.82417 6.15624 6.19040 6.63090 6.77673 7.28207 7.33952 8.86911 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.040713 B = 0.002832 C = 0.002817 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 687.575745 B = 9883.552710 C = 9936.340628 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.093 4.093 3 C -0.127 4.127 4 C -0.126 4.126 5 C -0.131 4.131 6 C -0.120 4.120 7 C -0.089 4.089 8 C -0.056 4.056 9 C -0.094 4.094 10 H 0.112 0.888 11 C -0.141 4.141 12 C 0.509 3.491 13 O -0.589 6.589 14 N -0.717 5.717 15 C 0.140 3.860 16 C 0.024 3.976 17 C -0.549 4.549 18 H 0.058 0.942 19 C 0.008 3.992 20 N -0.926 5.926 21 Si 0.964 3.036 22 H -0.269 1.269 23 H -0.280 1.280 24 H -0.268 1.268 25 H 0.073 0.927 26 H 0.080 0.920 27 H 0.060 0.940 28 H 0.136 0.864 29 H 0.141 0.859 30 H 0.139 0.861 31 H 0.128 0.872 32 H 0.068 0.932 33 H 0.068 0.932 34 H 0.068 0.932 35 H 0.055 0.945 36 H 0.083 0.917 37 H 0.410 0.590 38 H 0.045 0.955 39 H 0.044 0.956 40 H 0.008 0.992 41 H 0.008 0.992 42 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.093 18.290 -10.162 24.682 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.093 4.093 3 C -0.145 4.145 4 C -0.143 4.143 5 C -0.149 4.149 6 C -0.138 4.138 7 C -0.089 4.089 8 C -0.093 4.093 9 C -0.115 4.115 10 H 0.130 0.870 11 C -0.199 4.199 12 C 0.296 3.704 13 O -0.470 6.470 14 N -0.367 5.367 15 C 0.016 3.984 16 C -0.014 4.014 17 C -0.587 4.587 18 H 0.076 0.924 19 C -0.191 4.191 20 N -0.566 5.566 21 Si 0.789 3.211 22 H -0.194 1.194 23 H -0.205 1.205 24 H -0.193 1.193 25 H 0.092 0.908 26 H 0.098 0.902 27 H 0.079 0.921 28 H 0.154 0.846 29 H 0.159 0.841 30 H 0.157 0.843 31 H 0.146 0.854 32 H 0.087 0.913 33 H 0.087 0.913 34 H 0.087 0.913 35 H 0.074 0.926 36 H 0.102 0.898 37 H 0.245 0.755 38 H 0.063 0.937 39 H 0.063 0.937 40 H 0.027 0.973 41 H 0.027 0.973 42 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 12.870 17.870 -10.699 24.483 hybrid contribution -0.628 -0.828 0.580 1.190 sum 12.242 17.042 -10.119 23.296 Atomic orbital electron populations 1.20924 0.90971 1.03165 1.02861 1.19983 0.96522 0.92897 0.99924 1.21267 0.94796 0.97684 1.00782 1.21433 0.94309 0.98922 0.99670 1.21396 1.00884 0.92238 1.00341 1.21246 0.93319 0.99065 1.00177 1.19704 0.94071 0.93891 1.01220 1.20284 0.99945 0.94331 0.94770 1.21278 0.97124 0.94553 0.98508 0.87020 1.21819 0.95833 1.02991 0.99216 1.21307 0.79777 0.86336 0.82933 1.90648 1.61462 1.62351 1.32551 1.46179 1.51306 1.29345 1.09899 1.21211 0.92652 0.85732 0.98787 1.19119 0.95686 0.95938 0.90627 1.21448 1.31816 1.11871 0.93600 0.92382 1.25867 0.97640 1.00571 0.95037 1.70047 1.46175 1.41802 0.98536 0.85508 0.79065 0.79214 0.77333 1.19362 1.20518 1.19338 0.90829 0.90155 0.92078 0.84576 0.84119 0.84284 0.85394 0.91293 0.91283 0.91261 0.92611 0.89805 0.75462 0.93665 0.93715 0.97322 0.97338 0.92499 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.12 9.33 71.23 0.66 -1.46 16 2 C -0.09 -1.76 5.88 -19.87 -0.12 -1.88 16 3 C -0.13 -2.04 9.72 22.27 0.22 -1.83 16 4 C -0.13 -1.82 10.05 22.27 0.22 -1.60 16 5 C -0.13 -1.99 10.05 22.27 0.22 -1.76 16 6 C -0.12 -2.15 8.47 22.27 0.19 -1.96 16 7 C -0.09 -1.80 4.48 -19.86 -0.09 -1.89 16 8 C -0.06 -1.31 3.47 29.85 0.10 -1.21 16 9 C -0.09 -2.22 2.41 -11.54 -0.03 -2.25 16 10 H 0.11 2.34 6.88 -2.39 -0.02 2.33 16 11 C -0.14 -2.84 8.86 71.98 0.64 -2.20 16 12 C 0.51 16.97 7.15 87.66 0.63 17.59 16 13 O -0.59 -24.37 15.92 -3.05 -0.05 -24.42 16 14 N -0.72 -24.96 5.46 -463.07 -2.53 -27.49 16 15 C 0.14 6.09 5.61 86.38 0.48 6.57 16 16 C 0.02 1.20 5.09 29.85 0.15 1.35 16 17 C -0.55 -30.85 9.11 25.60 0.23 -30.62 16 18 H 0.06 3.19 7.74 -2.91 -0.02 3.17 16 19 C 0.01 0.43 5.46 84.66 0.46 0.90 16 20 N -0.93 -54.38 13.29 21.45 0.28 -54.09 16 21 Si 0.96 43.68 29.54 68.60 2.03 45.71 16 22 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 23 H -0.28 -12.29 7.11 99.48 0.71 -11.58 16 24 H -0.27 -11.78 7.11 99.48 0.71 -11.08 16 25 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 26 H 0.08 1.13 8.12 -2.39 -0.02 1.11 16 27 H 0.06 1.19 5.12 -2.39 -0.01 1.18 16 28 H 0.14 1.64 8.06 -2.91 -0.02 1.62 16 29 H 0.14 1.35 8.06 -2.91 -0.02 1.33 16 30 H 0.14 1.49 8.06 -2.91 -0.02 1.46 16 31 H 0.13 2.04 8.05 -2.91 -0.02 2.01 16 32 H 0.07 1.80 6.86 -2.39 -0.02 1.79 16 33 H 0.07 1.72 8.03 -2.38 -0.02 1.70 16 34 H 0.07 1.31 7.69 -2.38 -0.02 1.29 16 35 H 0.05 1.19 8.14 -2.39 -0.02 1.17 16 36 H 0.08 1.46 6.40 -2.39 -0.02 1.44 16 37 H 0.41 12.26 7.98 -92.71 -0.74 11.52 16 38 H 0.04 2.05 8.14 -2.39 -0.02 2.03 16 39 H 0.04 2.03 8.14 -2.39 -0.02 2.01 16 40 H 0.01 0.45 8.14 -2.39 -0.02 0.43 16 41 H 0.01 0.44 8.14 -2.39 -0.02 0.42 16 42 H 0.27 14.70 8.31 -92.71 -0.77 13.93 16 Total: -1.00 -67.12 344.85 3.98 -63.14 By element: Atomic # 1 Polarization: 19.12 SS G_CDS: 0.26 Total: 19.38 kcal Atomic # 6 Polarization: -26.22 SS G_CDS: 3.98 Total: -22.23 kcal Atomic # 7 Polarization: -79.34 SS G_CDS: -2.24 Total: -81.58 kcal Atomic # 8 Polarization: -24.37 SS G_CDS: -0.05 Total: -24.42 kcal Atomic # 14 Polarization: 43.68 SS G_CDS: 2.03 Total: 45.71 kcal Total: -67.12 3.98 -63.14 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599750995.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.881 kcal (2) G-P(sol) polarization free energy of solvation -67.120 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.002 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.979 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.141 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.023 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds