Wall clock time and date at job start Mon Mar 30 2020 02:33:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38258 * 120.00171 * 2 1 4 4 C 1.38210 * 119.99971 * 179.97438 * 3 2 1 5 5 C 1.38249 * 120.00135 * 0.02562 * 4 3 2 6 6 C 1.38210 * 120.00001 * 359.70241 * 5 4 3 7 7 C 1.38210 * 120.00100 * 179.97438 * 2 1 3 8 8 C 1.50705 * 119.99635 * 359.97438 * 7 2 1 9 9 H 1.08996 * 109.47542 * 327.00970 * 8 7 2 10 10 C 1.52999 * 109.46793 * 87.00988 * 8 7 2 11 11 O 1.42901 * 109.47200 * 54.99750 * 10 8 7 12 12 N 1.46903 * 109.46830 * 207.00540 * 8 7 2 13 13 C 1.46901 * 110.99820 * 156.25165 * 12 8 7 14 14 C 1.52996 * 109.47545 * 183.35686 * 13 12 8 15 15 C 1.50700 * 115.56204 * 268.61052 * 14 13 12 16 16 H 1.07995 * 120.00348 * 142.11040 * 15 14 13 17 17 C 1.37884 * 119.99987 * 322.10794 * 15 14 13 18 18 N 1.31510 * 119.99801 * 344.18860 * 17 15 14 19 19 Si 1.86798 * 119.99923 * 164.18539 * 17 15 14 20 20 H 1.48491 * 109.47279 * 60.00312 * 19 17 15 21 21 H 1.48501 * 109.46897 * 180.02562 * 19 17 15 22 22 H 1.48498 * 109.47140 * 299.99918 * 19 17 15 23 23 C 1.52994 * 117.50079 * 122.91670 * 14 13 12 24 24 C 1.52999 * 117.49582 * 54.29275 * 14 13 12 25 25 H 1.08996 * 109.46753 * 270.02165 * 1 2 3 26 26 H 1.09004 * 109.46782 * 30.01603 * 1 2 3 27 27 H 1.08999 * 109.47158 * 150.01390 * 1 2 3 28 28 H 1.08006 * 119.99750 * 0.02562 * 3 2 1 29 29 H 1.08002 * 119.99751 * 180.02562 * 4 3 2 30 30 H 1.08004 * 120.00034 * 179.97438 * 5 4 3 31 31 H 1.08003 * 120.00173 * 180.29759 * 6 5 4 32 32 H 1.09002 * 109.47330 * 174.99611 * 10 8 7 33 33 H 1.08998 * 109.47427 * 295.00018 * 10 8 7 34 34 H 0.96704 * 114.00604 * 179.97438 * 11 10 8 35 35 H 1.00902 * 111.00031 * 32.30179 * 12 8 7 36 36 H 1.09007 * 109.46968 * 63.35748 * 13 12 8 37 37 H 1.08997 * 109.47466 * 303.35856 * 13 12 8 38 38 H 0.96995 * 120.00012 * 185.02661 * 18 17 15 39 39 H 1.08995 * 117.49752 * 359.97438 * 23 14 13 40 40 H 1.09004 * 117.50013 * 145.02635 * 23 14 13 41 41 H 1.09006 * 117.50090 * 214.98245 * 24 14 13 42 42 H 1.08995 * 117.50422 * 359.97438 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1984 1.1973 0.0000 4 6 3.5805 1.1973 0.0005 5 6 4.2717 0.0000 0.0005 6 6 3.5806 -1.1969 0.0062 7 6 2.1981 -1.1969 0.0005 8 6 1.4445 -2.5020 0.0017 9 1 0.5166 -2.3854 0.5615 10 6 1.1238 -2.9070 -1.4385 11 8 2.3310 -2.9466 -2.2022 12 7 2.2686 -3.5427 0.6310 13 6 1.4322 -4.6285 1.1595 14 6 2.3161 -5.6493 1.8789 15 6 2.8201 -6.7868 1.0285 16 1 3.8210 -7.1661 1.1721 17 6 2.0033 -7.3433 0.0671 18 7 0.7089 -7.1123 0.0901 19 14 2.7355 -8.4253 -1.2681 20 1 3.4051 -9.5952 -0.6454 21 1 1.6551 -8.8957 -2.1717 22 1 3.7283 -7.6444 -2.0490 23 6 1.9983 -5.9502 3.3449 24 6 3.2387 -5.1305 2.9837 25 1 -0.3633 0.0004 1.0276 26 1 -0.3633 0.8899 -0.5141 27 1 -0.3633 -0.8901 -0.5136 28 1 1.6583 2.1327 0.0004 29 1 4.1205 2.1326 0.0010 30 1 5.3517 0.0000 0.0005 31 1 4.1206 -2.1323 0.0111 32 1 0.6581 -3.8924 -1.4437 33 1 0.4404 -2.1797 -1.8768 34 1 2.2031 -3.1972 -3.1274 35 1 2.8539 -3.1523 1.3543 36 1 0.9085 -5.1167 0.3376 37 1 0.7055 -4.2189 1.8610 38 1 0.1248 -7.5611 -0.5410 39 1 1.1598 -5.4206 3.7970 40 1 2.1538 -6.9709 3.6944 41 1 4.2102 -5.6120 3.0955 42 1 3.2163 -4.0621 3.1977 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602807369.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:33:10 Heat of formation + Delta-G solvation = 4.198595 kcal Electronic energy + Delta-G solvation = -21901.848812 eV Core-core repulsion = 18847.557109 eV Total energy + Delta-G solvation = -3054.291704 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -39.62185 -37.26408 -36.24175 -34.13283 -32.66612 -32.11991 -30.52200 -27.76760 -26.74088 -25.67773 -24.25369 -22.74111 -21.24997 -20.94771 -19.66352 -18.87395 -17.08697 -16.69042 -15.86638 -15.37034 -14.90551 -14.61858 -14.30931 -14.29068 -13.64938 -13.37172 -13.34037 -12.92234 -12.89100 -12.49001 -12.30950 -12.22109 -11.84651 -11.53026 -11.19344 -11.11102 -10.84059 -10.76717 -10.54229 -10.44945 -10.26145 -10.17782 -9.41594 -9.19611 -9.04845 -8.66956 -8.51218 -8.33505 -7.99328 -7.40191 -6.00959 -3.98340 1.57014 1.67525 3.34311 3.38137 3.45547 4.00014 4.43927 4.64950 4.87540 4.99823 5.01498 5.11264 5.14963 5.33675 5.39221 5.60735 5.62690 5.70297 5.72330 5.81193 5.91296 5.97299 6.07535 6.17894 6.18973 6.31755 6.37988 6.45631 6.60785 6.67988 6.71044 6.77250 6.81223 6.89684 7.01441 7.13683 7.28073 7.37314 7.71176 8.04205 8.06718 8.20281 8.29552 8.56019 8.94707 9.58447 11.02656 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.019977 B = 0.005564 C = 0.005180 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1401.269213 B = 5031.476699 C = 5403.662490 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.089 4.089 3 C -0.129 4.129 4 C -0.126 4.126 5 C -0.132 4.132 6 C -0.080 4.080 7 C -0.070 4.070 8 C 0.127 3.873 9 H 0.055 0.945 10 C 0.096 3.904 11 O -0.549 6.549 12 N -0.661 5.661 13 C 0.087 3.913 14 C 0.066 3.934 15 C -0.473 4.473 16 H 0.058 0.942 17 C 0.073 3.927 18 N -0.882 5.882 19 Si 0.891 3.109 20 H -0.279 1.279 21 H -0.289 1.289 22 H -0.273 1.273 23 C -0.206 4.206 24 C -0.210 4.210 25 H 0.068 0.932 26 H 0.063 0.937 27 H 0.068 0.932 28 H 0.115 0.885 29 H 0.114 0.886 30 H 0.117 0.883 31 H 0.137 0.863 32 H 0.055 0.945 33 H 0.032 0.968 34 H 0.365 0.635 35 H 0.328 0.672 36 H 0.124 0.876 37 H -0.008 1.008 38 H 0.261 0.739 39 H 0.060 0.940 40 H 0.077 0.923 41 H 0.075 0.925 42 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.400 14.074 -2.237 14.256 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.089 4.089 3 C -0.147 4.147 4 C -0.144 4.144 5 C -0.150 4.150 6 C -0.098 4.098 7 C -0.070 4.070 8 C 0.017 3.983 9 H 0.073 0.927 10 C 0.017 3.983 11 O -0.352 6.352 12 N -0.293 5.293 13 C -0.040 4.040 14 C 0.065 3.935 15 C -0.510 4.510 16 H 0.076 0.924 17 C -0.128 4.128 18 N -0.520 5.520 19 Si 0.719 3.281 20 H -0.205 1.205 21 H -0.215 1.215 22 H -0.199 1.199 23 C -0.244 4.244 24 C -0.248 4.248 25 H 0.086 0.914 26 H 0.082 0.918 27 H 0.087 0.913 28 H 0.133 0.867 29 H 0.132 0.868 30 H 0.135 0.865 31 H 0.155 0.845 32 H 0.073 0.927 33 H 0.050 0.950 34 H 0.210 0.790 35 H 0.147 0.853 36 H 0.142 0.858 37 H 0.010 0.990 38 H 0.071 0.929 39 H 0.079 0.921 40 H 0.095 0.905 41 H 0.093 0.907 42 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -0.189 13.915 -2.394 14.120 hybrid contribution -0.305 -0.291 -0.287 0.510 sum -0.494 13.624 -2.682 13.894 Atomic orbital electron populations 1.20856 0.91772 1.02623 1.02193 1.19734 0.95712 0.92783 1.00692 1.20858 0.94250 0.96933 1.02685 1.21026 0.94237 0.97781 1.01369 1.21145 0.99668 0.92629 1.01519 1.21168 0.93778 0.98520 0.96355 1.19773 0.94164 0.93568 0.99516 1.20465 0.94810 0.88356 0.94668 0.92705 1.22095 0.86263 0.99180 0.90771 1.86603 1.31626 1.92376 1.24589 1.60594 1.22920 1.09615 1.36144 1.21943 0.92809 0.89409 0.99871 1.18895 0.94299 0.94822 0.85489 1.20444 0.99423 1.15144 1.16034 0.92393 1.24882 0.94596 0.96206 0.97142 1.69823 1.02632 1.42457 1.37131 0.86674 0.78969 0.80278 0.82168 1.20498 1.21471 1.19889 1.23030 0.97187 0.98955 1.05258 1.22777 0.94709 0.96818 1.10448 0.91367 0.91829 0.91312 0.86733 0.86782 0.86499 0.84486 0.92658 0.94968 0.79012 0.85340 0.85828 0.99023 0.92941 0.92101 0.90476 0.90671 0.91914 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.38 9.21 36.01 0.33 -1.05 16 2 C -0.09 -1.25 5.88 -104.62 -0.62 -1.87 16 3 C -0.13 -1.65 9.70 -39.58 -0.38 -2.04 16 4 C -0.13 -1.60 10.05 -39.59 -0.40 -1.99 16 5 C -0.13 -1.83 10.05 -39.59 -0.40 -2.23 16 6 C -0.08 -1.30 8.52 -39.59 -0.34 -1.64 16 7 C -0.07 -1.13 4.53 -104.62 -0.47 -1.60 16 8 C 0.13 2.23 1.92 -68.86 -0.13 2.10 16 9 H 0.06 0.95 6.50 -51.93 -0.34 0.61 16 10 C 0.10 1.62 6.65 37.16 0.25 1.87 16 11 O -0.55 -9.59 12.80 -35.23 -0.45 -10.04 16 12 N -0.66 -13.55 5.50 -107.95 -0.59 -14.14 16 13 C 0.09 2.04 5.30 -3.83 -0.02 2.02 16 14 C 0.07 1.63 2.00 -155.67 -0.31 1.32 16 15 C -0.47 -12.99 9.00 -34.44 -0.31 -13.30 16 16 H 0.06 1.61 7.86 -52.49 -0.41 1.19 16 17 C 0.07 1.99 5.07 -17.82 -0.09 1.90 16 18 N -0.88 -24.17 11.01 55.43 0.61 -23.56 16 19 Si 0.89 21.17 29.57 -169.99 -5.03 16.15 16 20 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 21 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 22 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 23 C -0.21 -4.78 9.88 -26.73 -0.26 -5.04 16 24 C -0.21 -4.62 9.39 -26.73 -0.25 -4.87 16 25 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 26 H 0.06 0.62 8.09 -51.93 -0.42 0.20 16 27 H 0.07 0.82 5.55 -51.93 -0.29 0.53 16 28 H 0.11 1.19 8.06 -52.48 -0.42 0.77 16 29 H 0.11 1.15 8.06 -52.49 -0.42 0.73 16 30 H 0.12 1.39 8.06 -52.48 -0.42 0.97 16 31 H 0.14 2.43 7.09 -52.48 -0.37 2.06 16 32 H 0.06 1.05 7.32 -51.93 -0.38 0.67 16 33 H 0.03 0.47 7.02 -51.93 -0.36 0.10 16 34 H 0.37 4.81 9.12 45.56 0.42 5.23 16 35 H 0.33 6.52 6.02 -39.29 -0.24 6.29 16 36 H 0.12 3.20 4.52 -51.93 -0.23 2.97 16 37 H -0.01 -0.19 7.71 -51.93 -0.40 -0.59 16 38 H 0.26 6.84 8.32 -40.82 -0.34 6.50 16 39 H 0.06 1.33 8.03 -51.93 -0.42 0.92 16 40 H 0.08 1.82 8.14 -51.93 -0.42 1.39 16 41 H 0.07 1.64 8.14 -51.93 -0.42 1.21 16 42 H 0.06 1.26 7.33 -51.93 -0.38 0.88 16 LS Contribution 336.43 15.07 5.07 5.07 Total: -1.00 -29.41 336.43 -9.30 -38.71 By element: Atomic # 1 Polarization: 19.74 SS G_CDS: -5.50 Total: 14.24 kcal Atomic # 6 Polarization: -23.01 SS G_CDS: -3.41 Total: -26.42 kcal Atomic # 7 Polarization: -37.72 SS G_CDS: 0.02 Total: -37.71 kcal Atomic # 8 Polarization: -9.59 SS G_CDS: -0.45 Total: -10.04 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.03 Total: 16.15 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -29.41 -9.30 -38.71 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602807369.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.908 kcal (2) G-P(sol) polarization free energy of solvation -29.411 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.497 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.298 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.709 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.199 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds