Wall clock time and date at job start Mon Mar 30 2020 02:33:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38258 * 120.00171 * 2 1 4 4 C 1.38210 * 119.99971 * 179.97438 * 3 2 1 5 5 C 1.38249 * 120.00135 * 0.02562 * 4 3 2 6 6 C 1.38210 * 120.00001 * 359.70241 * 5 4 3 7 7 C 1.38210 * 120.00100 * 179.97438 * 2 1 3 8 8 C 1.50705 * 119.99635 * 359.97438 * 7 2 1 9 9 H 1.08996 * 109.47542 * 327.00970 * 8 7 2 10 10 C 1.52999 * 109.46793 * 87.00988 * 8 7 2 11 11 O 1.42901 * 109.47200 * 54.99750 * 10 8 7 12 12 N 1.46903 * 109.46830 * 207.00540 * 8 7 2 13 13 C 1.46901 * 110.99820 * 156.25165 * 12 8 7 14 14 C 1.52996 * 109.47545 * 183.35686 * 13 12 8 15 15 C 1.50700 * 115.56204 * 268.61052 * 14 13 12 16 16 H 1.07995 * 120.00348 * 142.11040 * 15 14 13 17 17 C 1.37884 * 119.99987 * 322.10794 * 15 14 13 18 18 N 1.31510 * 119.99801 * 344.18860 * 17 15 14 19 19 Si 1.86798 * 119.99923 * 164.18539 * 17 15 14 20 20 H 1.48491 * 109.47279 * 60.00312 * 19 17 15 21 21 H 1.48501 * 109.46897 * 180.02562 * 19 17 15 22 22 H 1.48498 * 109.47140 * 299.99918 * 19 17 15 23 23 C 1.52994 * 117.50079 * 122.91670 * 14 13 12 24 24 C 1.52999 * 117.49582 * 54.29275 * 14 13 12 25 25 H 1.08996 * 109.46753 * 270.02165 * 1 2 3 26 26 H 1.09004 * 109.46782 * 30.01603 * 1 2 3 27 27 H 1.08999 * 109.47158 * 150.01390 * 1 2 3 28 28 H 1.08006 * 119.99750 * 0.02562 * 3 2 1 29 29 H 1.08002 * 119.99751 * 180.02562 * 4 3 2 30 30 H 1.08004 * 120.00034 * 179.97438 * 5 4 3 31 31 H 1.08003 * 120.00173 * 180.29759 * 6 5 4 32 32 H 1.09002 * 109.47330 * 174.99611 * 10 8 7 33 33 H 1.08998 * 109.47427 * 295.00018 * 10 8 7 34 34 H 0.96704 * 114.00604 * 179.97438 * 11 10 8 35 35 H 1.00902 * 111.00031 * 32.30179 * 12 8 7 36 36 H 1.09007 * 109.46968 * 63.35748 * 13 12 8 37 37 H 1.08997 * 109.47466 * 303.35856 * 13 12 8 38 38 H 0.96995 * 120.00012 * 185.02661 * 18 17 15 39 39 H 1.08995 * 117.49752 * 359.97438 * 23 14 13 40 40 H 1.09004 * 117.50013 * 145.02635 * 23 14 13 41 41 H 1.09006 * 117.50090 * 214.98245 * 24 14 13 42 42 H 1.08995 * 117.50422 * 359.97438 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1984 1.1973 0.0000 4 6 3.5805 1.1973 0.0005 5 6 4.2717 0.0000 0.0005 6 6 3.5806 -1.1969 0.0062 7 6 2.1981 -1.1969 0.0005 8 6 1.4445 -2.5020 0.0017 9 1 0.5166 -2.3854 0.5615 10 6 1.1238 -2.9070 -1.4385 11 8 2.3310 -2.9466 -2.2022 12 7 2.2686 -3.5427 0.6310 13 6 1.4322 -4.6285 1.1595 14 6 2.3161 -5.6493 1.8789 15 6 2.8201 -6.7868 1.0285 16 1 3.8210 -7.1661 1.1721 17 6 2.0033 -7.3433 0.0671 18 7 0.7089 -7.1123 0.0901 19 14 2.7355 -8.4253 -1.2681 20 1 3.4051 -9.5952 -0.6454 21 1 1.6551 -8.8957 -2.1717 22 1 3.7283 -7.6444 -2.0490 23 6 1.9983 -5.9502 3.3449 24 6 3.2387 -5.1305 2.9837 25 1 -0.3633 0.0004 1.0276 26 1 -0.3633 0.8899 -0.5141 27 1 -0.3633 -0.8901 -0.5136 28 1 1.6583 2.1327 0.0004 29 1 4.1205 2.1326 0.0010 30 1 5.3517 0.0000 0.0005 31 1 4.1206 -2.1323 0.0111 32 1 0.6581 -3.8924 -1.4437 33 1 0.4404 -2.1797 -1.8768 34 1 2.2031 -3.1972 -3.1274 35 1 2.8539 -3.1523 1.3543 36 1 0.9085 -5.1167 0.3376 37 1 0.7055 -4.2189 1.8610 38 1 0.1248 -7.5611 -0.5410 39 1 1.1598 -5.4206 3.7970 40 1 2.1538 -6.9709 3.6944 41 1 4.2102 -5.6120 3.0955 42 1 3.2163 -4.0621 3.1977 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602807369.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:33:09 Heat of formation + Delta-G solvation = -14.077609 kcal Electronic energy + Delta-G solvation = -21902.641328 eV Core-core repulsion = 18847.557109 eV Total energy + Delta-G solvation = -3055.084220 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.78447 -38.91105 -37.70576 -35.59301 -34.17618 -33.72345 -31.79540 -29.10657 -27.78055 -27.65791 -25.95005 -23.96818 -22.96698 -22.17017 -20.94870 -20.77256 -18.54676 -18.24435 -17.35466 -16.75878 -16.46620 -16.17785 -15.72650 -15.52342 -15.18256 -15.06461 -14.55256 -14.32319 -14.05813 -13.89673 -13.74110 -13.29928 -13.24929 -13.03319 -12.84652 -12.81240 -12.43788 -12.30633 -12.24261 -12.09097 -11.79206 -11.54367 -11.12547 -10.99863 -10.74072 -10.58212 -9.96506 -9.58853 -9.41227 -9.02636 -8.06223 -6.09636 0.50865 0.60176 1.41817 1.45975 1.53188 2.45074 2.92513 3.01958 3.27675 3.52202 3.73053 3.84081 4.04893 4.14288 4.28299 4.30899 4.36077 4.47529 4.53112 4.56812 4.63669 4.72492 4.75371 4.80018 4.81527 4.89771 4.92869 4.98098 5.02674 5.12567 5.23770 5.27453 5.37389 5.53282 5.65689 5.65946 5.72308 5.83027 6.12173 6.21977 6.42627 6.45587 6.74858 6.86910 7.01085 7.48693 8.95938 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.019977 B = 0.005564 C = 0.005180 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1401.269213 B = 5031.476699 C = 5403.662490 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.095 4.095 3 C -0.128 4.128 4 C -0.122 4.122 5 C -0.138 4.138 6 C -0.101 4.101 7 C -0.087 4.087 8 C 0.128 3.872 9 H 0.056 0.944 10 C 0.100 3.900 11 O -0.567 6.567 12 N -0.667 5.667 13 C 0.102 3.898 14 C 0.034 3.966 15 C -0.498 4.498 16 H 0.045 0.955 17 C 0.035 3.965 18 N -0.899 5.899 19 Si 0.946 3.054 20 H -0.275 1.275 21 H -0.281 1.281 22 H -0.278 1.278 23 C -0.206 4.206 24 C -0.187 4.187 25 H 0.074 0.926 26 H 0.087 0.913 27 H 0.060 0.940 28 H 0.145 0.855 29 H 0.146 0.854 30 H 0.133 0.867 31 H 0.111 0.889 32 H 0.027 0.973 33 H 0.061 0.939 34 H 0.382 0.618 35 H 0.329 0.671 36 H 0.098 0.902 37 H -0.011 1.011 38 H 0.262 0.738 39 H 0.072 0.928 40 H 0.068 0.932 41 H 0.075 0.925 42 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.341 16.386 -2.577 16.591 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.096 4.096 3 C -0.146 4.146 4 C -0.139 4.139 5 C -0.156 4.156 6 C -0.120 4.120 7 C -0.088 4.088 8 C 0.018 3.982 9 H 0.074 0.926 10 C 0.021 3.979 11 O -0.372 6.372 12 N -0.299 5.299 13 C -0.026 4.026 14 C 0.033 3.967 15 C -0.535 4.535 16 H 0.063 0.937 17 C -0.165 4.165 18 N -0.538 5.538 19 Si 0.773 3.227 20 H -0.201 1.201 21 H -0.206 1.206 22 H -0.203 1.203 23 C -0.244 4.244 24 C -0.225 4.225 25 H 0.092 0.908 26 H 0.105 0.895 27 H 0.079 0.921 28 H 0.163 0.837 29 H 0.163 0.837 30 H 0.150 0.850 31 H 0.129 0.871 32 H 0.045 0.955 33 H 0.079 0.921 34 H 0.229 0.771 35 H 0.148 0.852 36 H 0.116 0.884 37 H 0.007 0.993 38 H 0.071 0.929 39 H 0.091 0.909 40 H 0.086 0.914 41 H 0.094 0.906 42 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -0.131 16.226 -2.740 16.456 hybrid contribution -0.302 -0.947 -0.182 1.010 sum -0.432 15.279 -2.921 15.561 Atomic orbital electron populations 1.20897 0.90254 1.03428 1.02824 1.20008 0.96970 0.92467 1.00127 1.21252 0.94567 0.97565 1.01229 1.21412 0.94523 0.98407 0.99602 1.21359 1.00632 0.92382 1.01241 1.21059 0.94028 0.98513 0.98351 1.19669 0.94121 0.93439 1.01531 1.20486 0.94655 0.88589 0.94491 0.92594 1.22044 0.86410 0.98418 0.91000 1.86560 1.32167 1.92455 1.26041 1.60496 1.23175 1.10250 1.35948 1.21590 0.92598 0.89849 0.98572 1.19026 0.96265 0.95243 0.86135 1.20662 0.99035 1.16378 1.17460 0.93704 1.25470 0.94925 0.97503 0.98580 1.69925 1.03299 1.43009 1.37528 0.85807 0.78260 0.78809 0.79847 1.20086 1.20646 1.20333 1.23003 0.98358 0.98973 1.04107 1.22756 0.94074 0.97819 1.07827 0.90782 0.89468 0.92071 0.83719 0.83661 0.84951 0.87060 0.95469 0.92094 0.77111 0.85154 0.88423 0.99315 0.92880 0.90914 0.91370 0.90638 0.89822 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.46 9.21 71.24 0.66 -1.80 16 2 C -0.10 -2.47 5.88 -19.87 -0.12 -2.59 16 3 C -0.13 -2.83 9.70 22.27 0.22 -2.61 16 4 C -0.12 -2.67 10.05 22.27 0.22 -2.44 16 5 C -0.14 -3.61 10.05 22.27 0.22 -3.38 16 6 C -0.10 -3.25 8.52 22.27 0.19 -3.06 16 7 C -0.09 -2.75 4.53 -19.87 -0.09 -2.84 16 8 C 0.13 4.50 1.92 44.17 0.08 4.59 16 9 H 0.06 1.94 6.50 -2.39 -0.02 1.92 16 10 C 0.10 3.42 6.65 71.98 0.48 3.90 16 11 O -0.57 -19.90 12.80 -148.98 -1.91 -21.81 16 12 N -0.67 -27.88 5.50 -495.44 -2.72 -30.60 16 13 C 0.10 4.88 5.30 86.30 0.46 5.34 16 14 C 0.03 1.72 2.00 -52.93 -0.11 1.61 16 15 C -0.50 -27.93 9.00 25.60 0.23 -27.70 16 16 H 0.04 2.55 7.86 -2.91 -0.02 2.53 16 17 C 0.04 1.94 5.07 84.66 0.43 2.37 16 18 N -0.90 -50.23 11.01 21.45 0.24 -50.00 16 19 Si 0.95 44.10 29.57 68.60 2.03 46.13 16 20 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 21 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 22 H -0.28 -13.03 7.11 99.48 0.71 -12.32 16 23 C -0.21 -9.58 9.88 30.59 0.30 -9.28 16 24 C -0.19 -8.18 9.39 30.59 0.29 -7.90 16 25 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 26 H 0.09 1.39 8.09 -2.38 -0.02 1.37 16 27 H 0.06 1.36 5.55 -2.39 -0.01 1.35 16 28 H 0.15 2.30 8.06 -2.91 -0.02 2.27 16 29 H 0.15 2.26 8.06 -2.91 -0.02 2.24 16 30 H 0.13 2.92 8.06 -2.91 -0.02 2.90 16 31 H 0.11 4.08 7.09 -2.91 -0.02 4.06 16 32 H 0.03 1.07 7.32 -2.39 -0.02 1.05 16 33 H 0.06 1.71 7.02 -2.39 -0.02 1.69 16 34 H 0.38 10.01 9.12 -74.05 -0.68 9.33 16 35 H 0.33 13.32 6.02 -89.69 -0.54 12.78 16 36 H 0.10 5.23 4.52 -2.38 -0.01 5.22 16 37 H -0.01 -0.52 7.71 -2.39 -0.02 -0.54 16 38 H 0.26 13.94 8.32 -92.71 -0.77 13.17 16 39 H 0.07 3.16 8.03 -2.39 -0.02 3.14 16 40 H 0.07 3.24 8.14 -2.38 -0.02 3.22 16 41 H 0.08 3.27 8.14 -2.38 -0.02 3.25 16 42 H 0.08 3.27 7.33 -2.39 -0.02 3.26 16 Total: -1.00 -63.47 336.43 0.92 -62.55 By element: Atomic # 1 Polarization: 39.72 SS G_CDS: -0.19 Total: 39.53 kcal Atomic # 6 Polarization: -49.27 SS G_CDS: 3.47 Total: -45.81 kcal Atomic # 7 Polarization: -78.11 SS G_CDS: -2.49 Total: -80.60 kcal Atomic # 8 Polarization: -19.90 SS G_CDS: -1.91 Total: -21.81 kcal Atomic # 14 Polarization: 44.10 SS G_CDS: 2.03 Total: 46.13 kcal Total: -63.47 0.92 -62.55 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602807369.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.474 kcal (2) G-P(sol) polarization free energy of solvation -63.467 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.993 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.915 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.551 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.078 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds