Wall clock time and date at job start Mon Mar 30 2020 01:31:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30835 * 1 3 3 Si 1.86803 * 120.00224 * 2 1 4 4 H 1.48500 * 109.46981 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.46923 * 300.00413 * 3 2 1 6 6 H 1.48501 * 109.46901 * 60.00289 * 3 2 1 7 7 C 1.39928 * 119.99910 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00101 * 197.88822 * 7 2 1 9 9 C 1.41408 * 120.00132 * 17.88281 * 7 2 1 10 10 C 1.40784 * 120.21387 * 204.41523 * 9 7 2 11 11 C 1.37641 * 119.89804 * 180.02562 * 10 9 7 12 12 C 1.38525 * 120.32507 * 359.73751 * 11 10 9 13 13 C 1.39293 * 120.42126 * 0.52551 * 12 11 10 14 14 N 1.39686 * 119.94822 * 179.75701 * 13 12 11 15 15 C 1.46496 * 120.00183 * 359.71863 * 14 13 12 16 16 C 1.53005 * 109.46900 * 179.97438 * 15 14 13 17 17 O 1.42900 * 109.46955 * 65.00834 * 16 15 14 18 18 C 1.42893 * 114.00015 * 180.02562 * 17 16 15 19 19 C 1.53000 * 109.47208 * 179.97438 * 18 17 16 20 20 C 1.53777 * 113.61592 * 85.86236 * 19 18 17 21 21 C 1.54048 * 86.98651 * 140.01757 * 20 19 18 22 22 C 1.53773 * 87.07826 * 334.56739 * 21 20 19 23 23 C 1.38314 * 120.09539 * 359.47623 * 13 12 11 24 24 H 0.96998 * 119.99304 * 359.97438 * 1 2 3 25 25 H 1.08005 * 120.04714 * 0.02562 * 10 9 7 26 26 H 1.08002 * 119.83769 * 180.02562 * 11 10 9 27 27 H 1.07995 * 119.78844 * 180.27465 * 12 11 10 28 28 H 0.97007 * 119.99425 * 179.72061 * 14 13 12 29 29 H 1.08998 * 109.46840 * 60.00197 * 15 14 13 30 30 H 1.08995 * 109.47114 * 300.00084 * 15 14 13 31 31 H 1.08994 * 109.47203 * 304.99819 * 16 15 14 32 32 H 1.09004 * 109.46949 * 185.00087 * 16 15 14 33 33 H 1.08998 * 109.47698 * 59.99046 * 18 17 16 34 34 H 1.09003 * 109.47175 * 299.99626 * 18 17 16 35 35 H 1.09000 * 112.85029 * 314.66229 * 19 18 17 36 36 H 1.09003 * 113.61198 * 254.61220 * 20 19 18 37 37 H 1.09001 * 113.61534 * 25.51381 * 20 19 18 38 38 H 1.09003 * 113.62178 * 220.01357 * 21 20 19 39 39 H 1.09002 * 113.61314 * 89.11622 * 21 20 19 40 40 H 1.08998 * 113.61461 * 270.87592 * 22 21 20 41 41 H 1.09001 * 113.68903 * 139.99043 * 22 21 20 42 42 H 1.08006 * 120.16179 * 180.23657 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2424 1.6177 0.0000 4 1 3.7024 1.3463 -0.0006 5 1 1.8836 2.3964 -1.2124 6 1 1.8837 2.3964 1.2126 7 6 2.0080 -1.2118 -0.0005 8 1 3.0488 -1.2346 0.2867 9 6 1.3522 -2.4067 -0.3771 10 6 1.8261 -3.6501 0.0826 11 6 1.1831 -4.8092 -0.2884 12 6 0.0676 -4.7585 -1.1082 13 6 -0.4095 -3.5360 -1.5753 14 7 -1.5321 -3.4968 -2.4056 15 6 -2.2030 -4.7412 -2.7896 16 6 -3.3942 -4.4201 -3.6946 17 8 -2.9232 -3.8516 -4.9181 18 6 -3.9617 -3.5128 -5.8393 19 6 -3.3452 -2.9154 -7.1057 20 6 -2.9213 -3.9703 -8.1413 21 6 -3.4636 -3.0122 -9.2189 22 6 -4.3865 -2.4375 -8.1315 23 6 0.2232 -2.3605 -1.2133 24 1 -0.4849 0.8401 0.0004 25 1 2.6929 -3.6944 0.7254 26 1 1.5472 -5.7625 0.0652 27 1 -0.4328 -5.6730 -1.3904 28 1 -1.8674 -2.6455 -2.7279 29 1 -2.5549 -5.2552 -1.8951 30 1 -1.5020 -5.3818 -3.3247 31 1 -4.0507 -3.7095 -3.1926 32 1 -3.9455 -5.3359 -3.9081 33 1 -4.6297 -2.7831 -5.3817 34 1 -4.5253 -4.4095 -6.0973 35 1 -2.5718 -2.1775 -6.8925 36 1 -1.8433 -4.1227 -8.1931 37 1 -3.4788 -4.9039 -8.0667 38 1 -3.9982 -3.5173 -10.0233 39 1 -2.7225 -2.3007 -9.5834 40 1 -5.3439 -2.9528 -8.0543 41 1 -4.4917 -1.3534 -8.1743 42 1 -0.1482 -1.4118 -1.5717 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000690420122.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:31:13 Heat of formation + Delta-G solvation = -16.855035 kcal Electronic energy + Delta-G solvation = -20385.015242 eV Core-core repulsion = 17329.810584 eV Total energy + Delta-G solvation = -3055.204658 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -39.30071 -37.96980 -37.19436 -34.72668 -33.19457 -30.30277 -29.35562 -28.27330 -26.32314 -25.78600 -25.13557 -22.84918 -22.38391 -20.74128 -19.79264 -19.55917 -17.21411 -16.77796 -16.02820 -16.00737 -15.42259 -15.18334 -14.65368 -14.61593 -14.07800 -13.66197 -13.10164 -12.90689 -12.71880 -12.67295 -12.39098 -12.17435 -11.95834 -11.67444 -11.47339 -11.20651 -10.99158 -10.87536 -10.72124 -10.55666 -10.47024 -10.42058 -10.32484 -9.63297 -9.51605 -9.36471 -9.17519 -8.67926 -7.23548 -6.66421 -6.06549 -4.24211 2.91157 3.14178 3.20157 3.30430 3.40381 3.58831 4.03115 4.39558 4.40447 4.47071 4.59685 4.69849 4.79580 5.09861 5.17843 5.31406 5.37389 5.40150 5.43447 5.47846 5.51646 5.66975 5.69302 5.84368 5.87882 5.99542 6.06289 6.15067 6.29553 6.34285 6.65524 6.95066 7.18278 7.20323 7.23416 7.45985 7.52864 7.89650 8.04022 8.18630 8.25303 8.56726 8.81839 8.92177 9.08733 9.20235 10.32236 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.015964 B = 0.003748 C = 0.003237 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1753.560640 B = 7469.342520 C = 8648.121489 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.793 5.793 2 C 0.078 3.922 3 Si 0.903 3.097 4 H -0.261 1.261 5 H -0.274 1.274 6 H -0.276 1.276 7 C -0.464 4.464 8 H 0.076 0.924 9 C 0.138 3.862 10 C -0.258 4.258 11 C -0.067 4.067 12 C -0.300 4.300 13 C 0.217 3.783 14 N -0.755 5.755 15 C 0.140 3.860 16 C 0.052 3.948 17 O -0.378 6.378 18 C 0.071 3.929 19 C -0.109 4.109 20 C -0.134 4.134 21 C -0.143 4.143 22 C -0.134 4.134 23 C -0.231 4.231 24 H 0.276 0.724 25 H 0.087 0.913 26 H 0.085 0.915 27 H 0.084 0.916 28 H 0.392 0.608 29 H 0.062 0.938 30 H 0.056 0.944 31 H 0.052 0.948 32 H 0.055 0.945 33 H 0.047 0.953 34 H 0.046 0.954 35 H 0.100 0.900 36 H 0.069 0.931 37 H 0.079 0.921 38 H 0.066 0.934 39 H 0.080 0.920 40 H 0.080 0.920 41 H 0.069 0.931 42 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.278 -4.486 -13.182 17.306 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.419 5.419 2 C -0.139 4.139 3 Si 0.728 3.272 4 H -0.185 1.185 5 H -0.199 1.199 6 H -0.202 1.202 7 C -0.495 4.495 8 H 0.094 0.906 9 C 0.135 3.865 10 C -0.279 4.279 11 C -0.085 4.085 12 C -0.323 4.323 13 C 0.118 3.882 14 N -0.389 5.389 15 C 0.015 3.985 16 C -0.024 4.024 17 O -0.297 6.297 18 C -0.006 4.006 19 C -0.128 4.128 20 C -0.171 4.171 21 C -0.180 4.180 22 C -0.171 4.171 23 C -0.255 4.255 24 H 0.087 0.913 25 H 0.106 0.894 26 H 0.103 0.897 27 H 0.103 0.897 28 H 0.225 0.775 29 H 0.080 0.920 30 H 0.074 0.926 31 H 0.070 0.930 32 H 0.073 0.927 33 H 0.065 0.935 34 H 0.064 0.936 35 H 0.118 0.882 36 H 0.088 0.912 37 H 0.097 0.903 38 H 0.085 0.915 39 H 0.099 0.901 40 H 0.098 0.902 41 H 0.088 0.912 42 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -10.330 -4.507 -13.217 17.370 hybrid contribution -0.174 0.999 0.045 1.015 sum -10.504 -3.509 -13.172 17.209 Atomic orbital electron populations 1.69885 1.07498 1.28563 1.35933 1.25870 0.94657 1.01051 0.92363 0.86357 0.81122 0.81386 0.78360 1.18469 1.19880 1.20172 1.19572 0.98068 0.91321 1.40498 0.90599 1.17327 0.90112 0.91835 0.87216 1.20855 1.04884 0.92943 1.09192 1.20275 0.95130 0.96224 0.96919 1.19873 1.04554 0.94356 1.13549 1.17661 0.86349 0.94330 0.89856 1.44319 1.32024 1.06315 1.56286 1.21054 0.92787 0.89029 0.95659 1.22781 0.96963 0.97354 0.85342 1.88001 1.32349 1.82279 1.27048 1.22496 0.90248 0.98008 0.89835 1.22547 0.99146 0.99003 0.92058 1.22984 1.01565 0.97118 0.95443 1.22857 0.99303 0.99273 0.96609 1.22899 0.97521 1.00975 0.95731 1.20716 1.02604 0.95065 1.07100 0.91339 0.89440 0.89686 0.89736 0.77460 0.91985 0.92575 0.92967 0.92656 0.93501 0.93629 0.88218 0.91176 0.90284 0.91524 0.90096 0.90171 0.91231 0.86571 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -21.15 10.96 55.55 0.61 -20.54 16 2 C 0.08 2.02 5.14 -17.34 -0.09 1.93 16 3 Si 0.90 19.30 29.60 -169.99 -5.03 14.27 16 4 H -0.26 -5.53 7.11 56.52 0.40 -5.13 16 5 H -0.27 -5.75 7.11 56.52 0.40 -5.34 16 6 H -0.28 -5.78 7.11 56.52 0.40 -5.38 16 7 C -0.46 -12.86 9.05 -37.74 -0.34 -13.20 16 8 H 0.08 2.03 7.91 -52.49 -0.42 1.61 16 9 C 0.14 3.87 5.57 -106.85 -0.60 3.27 16 10 C -0.26 -6.72 9.79 -38.84 -0.38 -7.10 16 11 C -0.07 -1.59 10.02 -39.69 -0.40 -1.99 16 12 C -0.30 -7.08 9.32 -39.08 -0.36 -7.44 16 13 C 0.22 5.27 6.64 -83.86 -0.56 4.72 16 14 N -0.76 -15.23 5.68 -58.69 -0.33 -15.57 16 15 C 0.14 2.26 5.29 -4.04 -0.02 2.24 16 16 C 0.05 0.68 6.07 37.16 0.23 0.91 16 17 O -0.38 -5.41 10.29 -35.23 -0.36 -5.77 16 18 C 0.07 0.78 5.76 37.16 0.21 1.00 16 19 C -0.11 -1.13 4.00 -89.81 -0.36 -1.49 16 20 C -0.13 -1.27 7.65 -25.78 -0.20 -1.47 16 21 C -0.14 -1.15 8.09 -25.78 -0.21 -1.36 16 22 C -0.13 -1.09 7.64 -25.92 -0.20 -1.29 16 23 C -0.23 -6.25 8.53 -38.67 -0.33 -6.58 16 24 H 0.28 6.69 8.30 -40.82 -0.34 6.35 16 25 H 0.09 2.15 8.06 -52.48 -0.42 1.73 16 26 H 0.08 1.77 8.06 -52.49 -0.42 1.34 16 27 H 0.08 1.78 6.70 -52.49 -0.35 1.43 16 28 H 0.39 7.76 8.48 -40.82 -0.35 7.41 16 29 H 0.06 0.96 7.93 -51.93 -0.41 0.55 16 30 H 0.06 0.94 7.95 -51.93 -0.41 0.53 16 31 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 33 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 34 H 0.05 0.44 7.88 -51.93 -0.41 0.03 16 35 H 0.10 1.17 8.14 -51.93 -0.42 0.75 16 36 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 37 H 0.08 0.70 7.92 -51.93 -0.41 0.29 16 38 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 39 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 40 H 0.08 0.58 8.10 -51.93 -0.42 0.16 16 41 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 42 H 0.12 3.25 6.16 -52.48 -0.32 2.93 16 LS Contribution 344.98 15.07 5.20 5.20 Total: -1.00 -29.49 344.98 -10.38 -39.88 By element: Atomic # 1 Polarization: 17.25 SS G_CDS: -6.86 Total: 10.39 kcal Atomic # 6 Polarization: -24.25 SS G_CDS: -3.60 Total: -27.85 kcal Atomic # 7 Polarization: -36.38 SS G_CDS: 0.28 Total: -36.11 kcal Atomic # 8 Polarization: -5.41 SS G_CDS: -0.36 Total: -5.77 kcal Atomic # 14 Polarization: 19.30 SS G_CDS: -5.03 Total: 14.27 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -29.49 -10.38 -39.88 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000690420122.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.021 kcal (2) G-P(sol) polarization free energy of solvation -29.493 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.472 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.383 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.876 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.855 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds