Wall clock time and date at job start Mon Mar 30 2020 01:31:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30835 * 1 3 3 Si 1.86803 * 120.00224 * 2 1 4 4 H 1.48500 * 109.46981 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.46923 * 300.00413 * 3 2 1 6 6 H 1.48501 * 109.46901 * 60.00289 * 3 2 1 7 7 C 1.39928 * 119.99910 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00101 * 197.88822 * 7 2 1 9 9 C 1.41408 * 120.00132 * 17.88281 * 7 2 1 10 10 C 1.40784 * 120.21387 * 204.41523 * 9 7 2 11 11 C 1.37641 * 119.89804 * 180.02562 * 10 9 7 12 12 C 1.38525 * 120.32507 * 359.73751 * 11 10 9 13 13 C 1.39293 * 120.42126 * 0.52551 * 12 11 10 14 14 N 1.39686 * 119.94822 * 179.75701 * 13 12 11 15 15 C 1.46496 * 120.00183 * 359.71863 * 14 13 12 16 16 C 1.53005 * 109.46900 * 179.97438 * 15 14 13 17 17 O 1.42900 * 109.46955 * 65.00834 * 16 15 14 18 18 C 1.42893 * 114.00015 * 180.02562 * 17 16 15 19 19 C 1.53000 * 109.47208 * 179.97438 * 18 17 16 20 20 C 1.53777 * 113.61592 * 85.86236 * 19 18 17 21 21 C 1.54048 * 86.98651 * 140.01757 * 20 19 18 22 22 C 1.53773 * 87.07826 * 334.56739 * 21 20 19 23 23 C 1.38314 * 120.09539 * 359.47623 * 13 12 11 24 24 H 0.96998 * 119.99304 * 359.97438 * 1 2 3 25 25 H 1.08005 * 120.04714 * 0.02562 * 10 9 7 26 26 H 1.08002 * 119.83769 * 180.02562 * 11 10 9 27 27 H 1.07995 * 119.78844 * 180.27465 * 12 11 10 28 28 H 0.97007 * 119.99425 * 179.72061 * 14 13 12 29 29 H 1.08998 * 109.46840 * 60.00197 * 15 14 13 30 30 H 1.08995 * 109.47114 * 300.00084 * 15 14 13 31 31 H 1.08994 * 109.47203 * 304.99819 * 16 15 14 32 32 H 1.09004 * 109.46949 * 185.00087 * 16 15 14 33 33 H 1.08998 * 109.47698 * 59.99046 * 18 17 16 34 34 H 1.09003 * 109.47175 * 299.99626 * 18 17 16 35 35 H 1.09000 * 112.85029 * 314.66229 * 19 18 17 36 36 H 1.09003 * 113.61198 * 254.61220 * 20 19 18 37 37 H 1.09001 * 113.61534 * 25.51381 * 20 19 18 38 38 H 1.09003 * 113.62178 * 220.01357 * 21 20 19 39 39 H 1.09002 * 113.61314 * 89.11622 * 21 20 19 40 40 H 1.08998 * 113.61461 * 270.87592 * 22 21 20 41 41 H 1.09001 * 113.68903 * 139.99043 * 22 21 20 42 42 H 1.08006 * 120.16179 * 180.23657 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2424 1.6177 0.0000 4 1 3.7024 1.3463 -0.0006 5 1 1.8836 2.3964 -1.2124 6 1 1.8837 2.3964 1.2126 7 6 2.0080 -1.2118 -0.0005 8 1 3.0488 -1.2346 0.2867 9 6 1.3522 -2.4067 -0.3771 10 6 1.8261 -3.6501 0.0826 11 6 1.1831 -4.8092 -0.2884 12 6 0.0676 -4.7585 -1.1082 13 6 -0.4095 -3.5360 -1.5753 14 7 -1.5321 -3.4968 -2.4056 15 6 -2.2030 -4.7412 -2.7896 16 6 -3.3942 -4.4201 -3.6946 17 8 -2.9232 -3.8516 -4.9181 18 6 -3.9617 -3.5128 -5.8393 19 6 -3.3452 -2.9154 -7.1057 20 6 -2.9213 -3.9703 -8.1413 21 6 -3.4636 -3.0122 -9.2189 22 6 -4.3865 -2.4375 -8.1315 23 6 0.2232 -2.3605 -1.2133 24 1 -0.4849 0.8401 0.0004 25 1 2.6929 -3.6944 0.7254 26 1 1.5472 -5.7625 0.0652 27 1 -0.4328 -5.6730 -1.3904 28 1 -1.8674 -2.6455 -2.7279 29 1 -2.5549 -5.2552 -1.8951 30 1 -1.5020 -5.3818 -3.3247 31 1 -4.0507 -3.7095 -3.1926 32 1 -3.9455 -5.3359 -3.9081 33 1 -4.6297 -2.7831 -5.3817 34 1 -4.5253 -4.4095 -6.0973 35 1 -2.5718 -2.1775 -6.8925 36 1 -1.8433 -4.1227 -8.1931 37 1 -3.4788 -4.9039 -8.0667 38 1 -3.9982 -3.5173 -10.0233 39 1 -2.7225 -2.3007 -9.5834 40 1 -5.3439 -2.9528 -8.0543 41 1 -4.4917 -1.3534 -8.1743 42 1 -0.1482 -1.4118 -1.5717 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000690420122.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:31:13 Heat of formation + Delta-G solvation = -32.734375 kcal Electronic energy + Delta-G solvation = -20385.703822 eV Core-core repulsion = 17329.810584 eV Total energy + Delta-G solvation = -3055.893238 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.13784 -39.61392 -38.38289 -36.39317 -35.06387 -31.70537 -31.32920 -29.35848 -27.81595 -27.11957 -26.48541 -23.80168 -23.61041 -22.57996 -21.62384 -20.30413 -19.10909 -17.74967 -17.69298 -17.07235 -16.63642 -16.47307 -16.27016 -15.99865 -15.55086 -14.84672 -14.64484 -14.48687 -14.19178 -13.92384 -13.54453 -13.35358 -13.33108 -13.03300 -12.81386 -12.73111 -12.52870 -12.39303 -12.14663 -12.00355 -11.51282 -11.45947 -11.31322 -11.22421 -11.15750 -11.06787 -10.53308 -10.47824 -9.24331 -8.61433 -7.88666 -6.31222 1.08523 1.34596 1.38306 1.53380 1.58077 2.23519 2.63704 2.81397 2.89164 3.67745 3.75158 3.84428 3.87736 3.95852 4.09151 4.23594 4.39593 4.41063 4.53259 4.55295 4.58444 4.72982 4.81278 4.82953 4.84665 4.89831 4.94711 5.00765 5.06637 5.11677 5.20851 5.31769 5.33037 5.45798 5.57021 5.60926 5.97219 6.11668 6.22485 6.25805 6.30665 6.59116 6.95259 7.06429 7.07677 7.25749 8.39233 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.015964 B = 0.003748 C = 0.003237 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1753.560640 B = 7469.342520 C = 8648.121489 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.822 5.822 2 C 0.036 3.964 3 Si 0.980 3.020 4 H -0.259 1.259 5 H -0.265 1.265 6 H -0.264 1.264 7 C -0.504 4.504 8 H 0.071 0.929 9 C 0.107 3.893 10 C -0.286 4.286 11 C -0.062 4.062 12 C -0.303 4.303 13 C 0.219 3.781 14 N -0.751 5.751 15 C 0.135 3.865 16 C 0.059 3.941 17 O -0.407 6.407 18 C 0.068 3.932 19 C -0.121 4.121 20 C -0.136 4.136 21 C -0.138 4.138 22 C -0.125 4.125 23 C -0.261 4.261 24 H 0.284 0.716 25 H 0.091 0.909 26 H 0.120 0.880 27 H 0.114 0.886 28 H 0.391 0.609 29 H 0.074 0.926 30 H 0.052 0.948 31 H 0.057 0.943 32 H 0.088 0.912 33 H 0.052 0.948 34 H 0.065 0.935 35 H 0.076 0.924 36 H 0.054 0.946 37 H 0.088 0.912 38 H 0.081 0.919 39 H 0.078 0.922 40 H 0.095 0.905 41 H 0.071 0.929 42 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.654 -5.151 -14.151 19.042 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.449 5.449 2 C -0.179 4.179 3 Si 0.801 3.199 4 H -0.183 1.183 5 H -0.190 1.190 6 H -0.189 1.189 7 C -0.533 4.533 8 H 0.090 0.910 9 C 0.105 3.895 10 C -0.307 4.307 11 C -0.081 4.081 12 C -0.326 4.326 13 C 0.117 3.883 14 N -0.384 5.384 15 C 0.011 3.989 16 C -0.018 4.018 17 O -0.327 6.327 18 C -0.008 4.008 19 C -0.139 4.139 20 C -0.174 4.174 21 C -0.176 4.176 22 C -0.162 4.162 23 C -0.285 4.285 24 H 0.095 0.905 25 H 0.109 0.891 26 H 0.138 0.862 27 H 0.132 0.868 28 H 0.224 0.776 29 H 0.092 0.908 30 H 0.070 0.930 31 H 0.075 0.925 32 H 0.106 0.894 33 H 0.070 0.930 34 H 0.083 0.917 35 H 0.094 0.906 36 H 0.073 0.927 37 H 0.107 0.893 38 H 0.100 0.900 39 H 0.097 0.903 40 H 0.114 0.886 41 H 0.090 0.910 42 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -11.741 -5.199 -14.205 19.149 hybrid contribution 0.180 1.091 0.306 1.147 sum -11.561 -4.109 -13.900 18.540 Atomic orbital electron populations 1.69939 1.08942 1.30000 1.35969 1.26734 0.95493 1.04350 0.91284 0.85202 0.79451 0.76378 0.78880 1.18290 1.19016 1.18910 1.19821 0.98221 0.92726 1.42582 0.91032 1.17729 0.90961 0.92940 0.87915 1.21031 1.05880 0.93349 1.10437 1.20663 0.94583 0.96953 0.95906 1.20230 1.04440 0.95059 1.12886 1.17814 0.86970 0.93876 0.89632 1.44474 1.30875 1.08026 1.54985 1.21302 0.93625 0.87155 0.96842 1.22746 0.95476 0.98965 0.84602 1.87965 1.34243 1.82688 1.27817 1.22665 0.89764 0.98990 0.89337 1.22595 0.99640 0.99053 0.92621 1.23021 1.00847 0.97625 0.95893 1.22846 0.99212 0.98802 0.96694 1.22890 0.97561 1.01339 0.94397 1.20641 1.03738 0.95403 1.08739 0.90515 0.89119 0.86199 0.86776 0.77578 0.90761 0.92968 0.92467 0.89384 0.93022 0.91684 0.90565 0.92674 0.89322 0.89984 0.90301 0.88629 0.90976 0.88503 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -45.07 10.96 21.82 0.24 -44.83 16 2 C 0.04 1.91 5.14 85.25 0.44 2.35 16 3 Si 0.98 40.20 29.60 68.60 2.03 42.23 16 4 H -0.26 -10.45 7.11 99.48 0.71 -9.74 16 5 H -0.27 -10.45 7.11 99.48 0.71 -9.74 16 6 H -0.26 -10.27 7.11 99.48 0.71 -9.56 16 7 C -0.50 -28.98 9.05 23.46 0.21 -28.77 16 8 H 0.07 4.00 7.91 -2.91 -0.02 3.97 16 9 C 0.11 6.25 5.57 -21.31 -0.12 6.13 16 10 C -0.29 -15.20 9.79 22.75 0.22 -14.97 16 11 C -0.06 -2.92 10.02 22.20 0.22 -2.70 16 12 C -0.30 -13.89 9.32 22.59 0.21 -13.68 16 13 C 0.22 10.67 6.64 38.16 0.25 10.92 16 14 N -0.75 -30.03 5.68 -339.59 -1.93 -31.96 16 15 C 0.13 4.09 5.29 86.38 0.46 4.55 16 16 C 0.06 1.39 6.07 71.98 0.44 1.82 16 17 O -0.41 -11.14 10.29 -148.98 -1.53 -12.68 16 18 C 0.07 1.40 5.76 71.98 0.41 1.81 16 19 C -0.12 -2.40 4.00 -10.27 -0.04 -2.44 16 20 C -0.14 -2.45 7.65 31.21 0.24 -2.21 16 21 C -0.14 -1.99 8.09 31.21 0.25 -1.74 16 22 C -0.12 -1.81 7.64 31.12 0.24 -1.57 16 23 C -0.26 -14.62 8.53 22.86 0.20 -14.42 16 24 H 0.28 14.03 8.30 -92.71 -0.77 13.26 16 25 H 0.09 4.58 8.06 -2.91 -0.02 4.56 16 26 H 0.12 4.68 8.06 -2.91 -0.02 4.66 16 27 H 0.11 4.49 6.70 -2.91 -0.02 4.47 16 28 H 0.39 15.64 8.48 -92.70 -0.79 14.86 16 29 H 0.07 2.10 7.93 -2.39 -0.02 2.08 16 30 H 0.05 1.65 7.95 -2.39 -0.02 1.63 16 31 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 32 H 0.09 1.54 8.14 -2.39 -0.02 1.52 16 33 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 34 H 0.07 1.07 7.88 -2.39 -0.02 1.05 16 35 H 0.08 1.85 8.14 -2.39 -0.02 1.83 16 36 H 0.05 1.13 8.14 -2.39 -0.02 1.11 16 37 H 0.09 1.40 7.92 -2.39 -0.02 1.38 16 38 H 0.08 0.94 8.14 -2.39 -0.02 0.92 16 39 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 40 H 0.10 1.11 8.10 -2.39 -0.02 1.09 16 41 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 42 H 0.10 5.69 6.16 -2.91 -0.02 5.67 16 Total: -1.00 -65.41 344.98 2.65 -62.76 By element: Atomic # 1 Polarization: 39.19 SS G_CDS: 0.21 Total: 39.40 kcal Atomic # 6 Polarization: -58.56 SS G_CDS: 3.63 Total: -54.93 kcal Atomic # 7 Polarization: -75.10 SS G_CDS: -1.69 Total: -76.79 kcal Atomic # 8 Polarization: -11.14 SS G_CDS: -1.53 Total: -12.68 kcal Atomic # 14 Polarization: 40.20 SS G_CDS: 2.03 Total: 42.23 kcal Total: -65.41 2.65 -62.76 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000690420122.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.030 kcal (2) G-P(sol) polarization free energy of solvation -65.413 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.384 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.649 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.764 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.734 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds