Wall clock time and date at job start Mon Mar 30 2020 01:23:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86800 * 120.00027 * 2 1 4 4 H 1.48499 * 109.47360 * 270.00365 * 3 2 1 5 5 H 1.48502 * 109.47183 * 30.00220 * 3 2 1 6 6 H 1.48501 * 109.47218 * 150.00106 * 3 2 1 7 7 C 1.37874 * 120.00171 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99974 * 359.97438 * 7 2 1 9 9 C 1.50697 * 120.00278 * 179.97438 * 7 2 1 10 10 N 1.46902 * 109.47518 * 185.07513 * 9 7 2 11 11 C 1.46896 * 111.00109 * 195.60295 * 10 9 7 12 12 C 1.50704 * 109.47393 * 72.51173 * 11 10 9 13 13 C 1.38166 * 120.02902 * 254.73317 * 12 11 10 14 14 C 1.38244 * 120.05452 * 179.97438 * 13 12 11 15 15 C 1.38281 * 120.11415 * 0.02562 * 14 13 12 16 16 C 1.38132 * 120.05707 * 0.02562 * 15 14 13 17 17 C 1.38713 * 120.02738 * 74.45214 * 12 11 10 18 18 O 1.35905 * 120.05761 * 359.97438 * 17 12 11 19 19 C 1.46894 * 110.99889 * 71.64647 * 10 9 7 20 20 C 1.54963 * 110.92299 * 76.85617 * 19 10 9 21 21 C 1.54269 * 104.16070 * 156.29498 * 20 19 10 22 22 C 1.53879 * 106.64118 * 336.44827 * 21 20 19 23 23 C 1.54275 * 106.59670 * 359.97184 * 22 21 20 24 24 H 0.97003 * 119.99923 * 359.97438 * 1 2 3 25 25 H 1.09000 * 109.47210 * 65.07349 * 9 7 2 26 26 H 1.09000 * 109.47085 * 305.07309 * 9 7 2 27 27 H 1.09002 * 109.47105 * 192.51060 * 11 10 9 28 28 H 1.08999 * 109.47450 * 312.50901 * 11 10 9 29 29 H 1.08000 * 119.97058 * 359.97353 * 13 12 11 30 30 H 1.08001 * 119.94140 * 179.97438 * 14 13 12 31 31 H 1.08001 * 119.97671 * 180.02562 * 15 14 13 32 32 H 1.07996 * 120.03039 * 179.97438 * 16 15 14 33 33 H 0.96704 * 113.99301 * 89.99628 * 18 17 12 34 34 H 1.09007 * 110.67440 * 313.54932 * 19 10 9 35 35 H 1.08993 * 110.47667 * 37.64176 * 20 19 10 36 36 H 1.08999 * 110.53250 * 274.97238 * 20 19 10 37 37 H 1.08997 * 110.03259 * 217.13744 * 21 20 19 38 38 H 1.09001 * 110.03369 * 95.74959 * 21 20 19 39 39 H 1.08994 * 110.03696 * 119.26097 * 22 21 20 40 40 H 1.09004 * 110.03192 * 240.64610 * 22 21 20 41 41 H 1.08999 * 110.48358 * 142.28793 * 23 22 21 42 42 H 1.08996 * 110.48443 * 264.80146 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 1.4646 -2.1294 -0.0005 9 6 3.5115 -1.1940 -0.0011 10 7 4.0012 -2.5736 -0.1241 11 6 5.4221 -2.6620 0.2378 12 6 5.5711 -2.5095 1.7296 13 6 6.0551 -1.3286 2.2590 14 6 6.1914 -1.1879 3.6275 15 6 5.8445 -2.2282 4.4699 16 6 5.3611 -3.4112 3.9456 17 6 5.2169 -3.5524 2.5728 18 8 4.7347 -4.7127 2.0550 19 6 3.7691 -3.0958 -1.4773 20 6 4.8053 -2.5228 -2.4770 21 6 4.8427 -3.5604 -3.6180 22 6 4.3594 -4.8926 -3.0182 23 6 4.0455 -4.6189 -1.5327 24 1 -0.4850 0.8401 0.0004 25 1 3.8752 -0.7611 0.9308 26 1 3.8745 -0.6033 -0.8422 27 1 5.8157 -3.6310 -0.0694 28 1 5.9754 -1.8691 -0.2656 29 1 6.3271 -0.5148 1.6032 30 1 6.5703 -0.2642 4.0393 31 1 5.9515 -2.1157 5.5387 32 1 5.0907 -4.2235 4.6039 33 1 5.4173 -5.3679 1.8553 34 1 2.7534 -2.8754 -1.8059 35 1 5.7842 -2.4391 -2.0053 36 1 4.4779 -1.5537 -2.8534 37 1 5.8608 -3.6671 -3.9924 38 1 4.1786 -3.2518 -4.4253 39 1 3.4604 -5.2300 -3.5338 40 1 5.1428 -5.6459 -3.1023 41 1 3.1638 -5.1782 -1.2199 42 1 4.9009 -4.8764 -0.9083 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000731848129.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:23:18 Heat of formation + Delta-G solvation = -17.000676 kcal Electronic energy + Delta-G solvation = -22137.670418 eV Core-core repulsion = 19082.459445 eV Total energy + Delta-G solvation = -3055.210973 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -39.75141 -38.35698 -36.27829 -34.86595 -32.50104 -31.08760 -29.53979 -28.40798 -28.05003 -26.60453 -24.31695 -22.34284 -21.47444 -21.10471 -19.84918 -18.69976 -17.90579 -16.68899 -16.07357 -15.68408 -15.44055 -15.13517 -14.69884 -14.23257 -13.88006 -13.53018 -13.19770 -13.12228 -12.73574 -12.48020 -12.34758 -11.95167 -11.84048 -11.58279 -11.32774 -10.95843 -10.93954 -10.80055 -10.69968 -10.57179 -10.21845 -10.09308 -9.98713 -9.81567 -9.78194 -9.20488 -8.57593 -8.48700 -8.22013 -7.21239 -5.98265 -3.93592 1.56762 1.60631 3.30041 3.38009 3.40229 3.90821 4.47015 4.52088 4.77091 5.04237 5.05704 5.11884 5.17050 5.28069 5.33832 5.39884 5.53208 5.72445 5.76666 5.83247 5.88285 5.91994 5.99231 6.03683 6.09836 6.20179 6.22373 6.26434 6.30507 6.41010 6.58284 6.60381 6.70969 6.71812 6.83024 6.90678 6.97638 7.08024 7.10748 7.72462 8.00653 8.03083 8.15856 8.75319 9.13857 9.64560 11.15318 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.010503 B = 0.009177 C = 0.005797 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2665.260596 B = 3050.351979 C = 4829.158865 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.067 3.933 3 Si 0.871 3.129 4 H -0.279 1.279 5 H -0.287 1.287 6 H -0.268 1.268 7 C -0.500 4.500 8 H 0.080 0.920 9 C 0.162 3.838 10 N -0.502 5.502 11 C 0.095 3.905 12 C -0.089 4.089 13 C -0.099 4.099 14 C -0.133 4.133 15 C -0.112 4.112 16 C -0.152 4.152 17 C 0.132 3.868 18 O -0.478 6.478 19 C 0.093 3.907 20 C -0.162 4.162 21 C -0.118 4.118 22 C -0.124 4.124 23 C -0.113 4.113 24 H 0.262 0.738 25 H 0.027 0.973 26 H -0.016 1.016 27 H 0.075 0.925 28 H 0.032 0.968 29 H 0.119 0.881 30 H 0.119 0.881 31 H 0.120 0.880 32 H 0.123 0.877 33 H 0.376 0.624 34 H 0.101 0.899 35 H 0.062 0.938 36 H 0.063 0.937 37 H 0.053 0.947 38 H 0.059 0.941 39 H 0.060 0.940 40 H 0.055 0.945 41 H 0.066 0.934 42 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.293 -7.581 1.173 17.110 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.134 4.134 3 Si 0.698 3.302 4 H -0.205 1.205 5 H -0.213 1.213 6 H -0.193 1.193 7 C -0.538 4.538 8 H 0.099 0.901 9 C 0.036 3.964 10 N -0.224 5.224 11 C -0.033 4.033 12 C -0.090 4.090 13 C -0.118 4.118 14 C -0.151 4.151 15 C -0.130 4.130 16 C -0.171 4.171 17 C 0.087 3.913 18 O -0.286 6.286 19 C -0.016 4.016 20 C -0.202 4.202 21 C -0.157 4.157 22 C -0.162 4.162 23 C -0.151 4.151 24 H 0.072 0.928 25 H 0.045 0.955 26 H 0.002 0.998 27 H 0.093 0.907 28 H 0.050 0.950 29 H 0.137 0.863 30 H 0.137 0.863 31 H 0.138 0.862 32 H 0.141 0.859 33 H 0.230 0.770 34 H 0.119 0.881 35 H 0.080 0.920 36 H 0.081 0.919 37 H 0.072 0.928 38 H 0.078 0.922 39 H 0.079 0.921 40 H 0.074 0.926 41 H 0.085 0.915 42 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 14.299 -7.466 1.567 16.206 hybrid contribution 1.164 1.403 -0.587 1.915 sum 15.463 -6.063 0.979 16.638 Atomic orbital electron populations 1.69898 1.06049 1.26578 1.51616 1.24882 0.94679 0.98615 0.95179 0.86926 0.80466 0.84450 0.78313 1.20471 1.21253 1.19271 1.21033 0.88789 0.94595 1.49400 0.90148 1.20195 0.97090 0.84050 0.95059 1.61997 1.12543 1.24016 1.23810 1.20915 0.91980 1.00299 0.90131 1.20254 0.98206 0.94175 0.96414 1.20981 0.99090 0.96432 0.95252 1.21042 1.01785 0.98824 0.93480 1.20906 0.99500 0.93228 0.99389 1.21375 1.01973 0.99047 0.94706 1.18210 0.95437 0.87410 0.90262 1.84998 1.34912 1.24395 1.84312 1.22678 0.99444 0.92790 0.86721 1.23103 1.00483 0.98980 0.97616 1.22018 1.00221 0.95367 0.98050 1.22128 1.00374 0.96909 0.96807 1.22380 1.01378 0.96773 0.94553 0.92832 0.95467 0.99818 0.90708 0.95014 0.86290 0.86328 0.86234 0.85906 0.76998 0.88107 0.91959 0.91867 0.92772 0.92175 0.92110 0.92600 0.91484 0.91867 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -28.22 13.96 55.43 0.77 -27.45 16 2 C 0.07 1.99 5.47 -17.82 -0.10 1.90 16 3 Si 0.87 22.03 27.37 -169.99 -4.65 17.38 16 4 H -0.28 -6.91 7.11 56.52 0.40 -6.50 16 5 H -0.29 -7.21 7.11 56.52 0.40 -6.80 16 6 H -0.27 -6.53 6.69 56.52 0.38 -6.15 16 7 C -0.50 -14.52 8.92 -34.44 -0.31 -14.83 16 8 H 0.08 2.58 8.01 -52.48 -0.42 2.16 16 9 C 0.16 3.99 3.57 -4.98 -0.02 3.97 16 10 N -0.50 -10.46 4.39 -227.09 -1.00 -11.46 16 11 C 0.09 1.62 3.30 -4.98 -0.02 1.60 16 12 C -0.09 -1.53 4.73 -104.47 -0.49 -2.02 16 13 C -0.10 -1.60 8.80 -39.61 -0.35 -1.94 16 14 C -0.13 -1.91 10.04 -39.56 -0.40 -2.30 16 15 C -0.11 -1.52 10.04 -39.60 -0.40 -1.92 16 16 C -0.15 -2.22 9.99 -39.43 -0.39 -2.61 16 17 C 0.13 2.14 6.68 -39.22 -0.26 1.88 16 18 O -0.48 -7.31 12.85 -19.44 -0.25 -7.56 16 19 C 0.09 1.75 2.80 -65.68 -0.18 1.57 16 20 C -0.16 -2.65 5.56 -25.03 -0.14 -2.79 16 21 C -0.12 -1.61 6.80 -25.61 -0.17 -1.78 16 22 C -0.12 -1.63 6.80 -25.61 -0.17 -1.80 16 23 C -0.11 -1.75 6.33 -25.07 -0.16 -1.90 16 24 H 0.26 7.69 8.31 -40.82 -0.34 7.35 16 25 H 0.03 0.70 5.92 -51.93 -0.31 0.39 16 26 H -0.02 -0.39 6.52 -51.93 -0.34 -0.73 16 27 H 0.07 1.13 5.83 -51.93 -0.30 0.83 16 28 H 0.03 0.54 6.66 -51.93 -0.35 0.19 16 29 H 0.12 1.82 8.00 -52.49 -0.42 1.40 16 30 H 0.12 1.41 8.06 -52.49 -0.42 0.98 16 31 H 0.12 1.29 8.06 -52.49 -0.42 0.87 16 32 H 0.12 1.54 8.06 -52.49 -0.42 1.11 16 33 H 0.38 3.68 9.06 45.56 0.41 4.09 16 34 H 0.10 2.23 7.25 -51.93 -0.38 1.86 16 35 H 0.06 0.96 5.78 -51.93 -0.30 0.66 16 36 H 0.06 1.11 7.93 -51.93 -0.41 0.70 16 37 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 38 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 39 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 40 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 41 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 42 H 0.06 0.91 6.10 -51.93 -0.32 0.59 16 LS Contribution 329.56 15.07 4.97 4.97 Total: -1.00 -32.88 329.56 -9.39 -42.27 By element: Atomic # 1 Polarization: 10.51 SS G_CDS: -5.67 Total: 4.84 kcal Atomic # 6 Polarization: -19.42 SS G_CDS: -3.56 Total: -22.99 kcal Atomic # 7 Polarization: -38.69 SS G_CDS: -0.22 Total: -38.91 kcal Atomic # 8 Polarization: -7.31 SS G_CDS: -0.25 Total: -7.56 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -4.65 Total: 17.38 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -32.88 -9.39 -42.27 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000731848129.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.270 kcal (2) G-P(sol) polarization free energy of solvation -32.881 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.611 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.390 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.271 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.001 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds