Wall clock time and date at job start Mon Mar 30 2020 01:23:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86800 * 120.00027 * 2 1 4 4 H 1.48499 * 109.47360 * 270.00365 * 3 2 1 5 5 H 1.48502 * 109.47183 * 30.00220 * 3 2 1 6 6 H 1.48501 * 109.47218 * 150.00106 * 3 2 1 7 7 C 1.37874 * 120.00171 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99974 * 359.97438 * 7 2 1 9 9 C 1.50697 * 120.00278 * 179.97438 * 7 2 1 10 10 N 1.46902 * 109.47518 * 185.07513 * 9 7 2 11 11 C 1.46896 * 111.00109 * 195.60295 * 10 9 7 12 12 C 1.50704 * 109.47393 * 72.51173 * 11 10 9 13 13 C 1.38166 * 120.02902 * 254.73317 * 12 11 10 14 14 C 1.38244 * 120.05452 * 179.97438 * 13 12 11 15 15 C 1.38281 * 120.11415 * 0.02562 * 14 13 12 16 16 C 1.38132 * 120.05707 * 0.02562 * 15 14 13 17 17 C 1.38713 * 120.02738 * 74.45214 * 12 11 10 18 18 O 1.35905 * 120.05761 * 359.97438 * 17 12 11 19 19 C 1.46894 * 110.99889 * 71.64647 * 10 9 7 20 20 C 1.54963 * 110.92299 * 76.85617 * 19 10 9 21 21 C 1.54269 * 104.16070 * 156.29498 * 20 19 10 22 22 C 1.53879 * 106.64118 * 336.44827 * 21 20 19 23 23 C 1.54275 * 106.59670 * 359.97184 * 22 21 20 24 24 H 0.97003 * 119.99923 * 359.97438 * 1 2 3 25 25 H 1.09000 * 109.47210 * 65.07349 * 9 7 2 26 26 H 1.09000 * 109.47085 * 305.07309 * 9 7 2 27 27 H 1.09002 * 109.47105 * 192.51060 * 11 10 9 28 28 H 1.08999 * 109.47450 * 312.50901 * 11 10 9 29 29 H 1.08000 * 119.97058 * 359.97353 * 13 12 11 30 30 H 1.08001 * 119.94140 * 179.97438 * 14 13 12 31 31 H 1.08001 * 119.97671 * 180.02562 * 15 14 13 32 32 H 1.07996 * 120.03039 * 179.97438 * 16 15 14 33 33 H 0.96704 * 113.99301 * 89.99628 * 18 17 12 34 34 H 1.09007 * 110.67440 * 313.54932 * 19 10 9 35 35 H 1.08993 * 110.47667 * 37.64176 * 20 19 10 36 36 H 1.08999 * 110.53250 * 274.97238 * 20 19 10 37 37 H 1.08997 * 110.03259 * 217.13744 * 21 20 19 38 38 H 1.09001 * 110.03369 * 95.74959 * 21 20 19 39 39 H 1.08994 * 110.03696 * 119.26097 * 22 21 20 40 40 H 1.09004 * 110.03192 * 240.64610 * 22 21 20 41 41 H 1.08999 * 110.48358 * 142.28793 * 23 22 21 42 42 H 1.08996 * 110.48443 * 264.80146 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 1.4646 -2.1294 -0.0005 9 6 3.5115 -1.1940 -0.0011 10 7 4.0012 -2.5736 -0.1241 11 6 5.4221 -2.6620 0.2378 12 6 5.5711 -2.5095 1.7296 13 6 6.0551 -1.3286 2.2590 14 6 6.1914 -1.1879 3.6275 15 6 5.8445 -2.2282 4.4699 16 6 5.3611 -3.4112 3.9456 17 6 5.2169 -3.5524 2.5728 18 8 4.7347 -4.7127 2.0550 19 6 3.7691 -3.0958 -1.4773 20 6 4.8053 -2.5228 -2.4770 21 6 4.8427 -3.5604 -3.6180 22 6 4.3594 -4.8926 -3.0182 23 6 4.0455 -4.6189 -1.5327 24 1 -0.4850 0.8401 0.0004 25 1 3.8752 -0.7611 0.9308 26 1 3.8745 -0.6033 -0.8422 27 1 5.8157 -3.6310 -0.0694 28 1 5.9754 -1.8691 -0.2656 29 1 6.3271 -0.5148 1.6032 30 1 6.5703 -0.2642 4.0393 31 1 5.9515 -2.1157 5.5387 32 1 5.0907 -4.2235 4.6039 33 1 5.4173 -5.3679 1.8553 34 1 2.7534 -2.8754 -1.8059 35 1 5.7842 -2.4391 -2.0053 36 1 4.4779 -1.5537 -2.8534 37 1 5.8608 -3.6671 -3.9924 38 1 4.1786 -3.2518 -4.4253 39 1 3.4604 -5.2300 -3.5338 40 1 5.1428 -5.6459 -3.1023 41 1 3.1638 -5.1782 -1.2199 42 1 4.9009 -4.8764 -0.9083 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000731848129.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:23:17 Heat of formation + Delta-G solvation = -39.618293 kcal Electronic energy + Delta-G solvation = -22138.651192 eV Core-core repulsion = 19082.459445 eV Total energy + Delta-G solvation = -3056.191747 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.98484 -39.68217 -37.41702 -36.32458 -34.62049 -32.44179 -30.73747 -30.01038 -29.49671 -27.92602 -25.93472 -23.59069 -23.16312 -22.38224 -21.01774 -20.15550 -19.10702 -18.86251 -17.43081 -16.89290 -16.74115 -16.40974 -16.21501 -15.83647 -15.41664 -14.76405 -14.56349 -14.45307 -14.36597 -14.20266 -13.68528 -13.51058 -13.11939 -12.84254 -12.70561 -12.62562 -12.43097 -12.16742 -12.03122 -11.86896 -11.83008 -11.75011 -11.49074 -11.32193 -11.16722 -11.07801 -10.78155 -9.72122 -9.37401 -8.81678 -8.28581 -6.29775 0.43698 0.46164 1.28291 1.30844 1.41936 2.31882 2.76118 3.04952 3.33673 3.46361 3.80518 3.85225 3.94728 4.03166 4.13259 4.24847 4.35315 4.48632 4.56253 4.59553 4.65522 4.70172 4.75334 4.77854 4.82679 4.94163 4.99884 5.08755 5.09577 5.14089 5.15793 5.24462 5.40105 5.42041 5.52028 5.56157 5.59500 5.62623 5.68911 6.04223 6.07214 6.51167 6.72380 6.76844 7.05882 7.33059 8.88852 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.010503 B = 0.009177 C = 0.005797 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2665.260596 B = 3050.351979 C = 4829.158865 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.950 5.950 2 C 0.006 3.994 3 Si 0.942 3.058 4 H -0.267 1.267 5 H -0.280 1.280 6 H -0.250 1.250 7 C -0.506 4.506 8 H 0.029 0.971 9 C 0.179 3.821 10 N -0.519 5.519 11 C 0.101 3.899 12 C -0.118 4.118 13 C -0.116 4.116 14 C -0.139 4.139 15 C -0.108 4.108 16 C -0.162 4.162 17 C 0.118 3.882 18 O -0.496 6.496 19 C 0.083 3.917 20 C -0.157 4.157 21 C -0.113 4.113 22 C -0.117 4.117 23 C -0.104 4.104 24 H 0.265 0.735 25 H 0.022 0.978 26 H -0.016 1.016 27 H 0.096 0.904 28 H 0.036 0.964 29 H 0.121 0.879 30 H 0.144 0.856 31 H 0.151 0.849 32 H 0.141 0.859 33 H 0.398 0.602 34 H 0.051 0.949 35 H 0.077 0.923 36 H 0.042 0.958 37 H 0.082 0.918 38 H 0.057 0.943 39 H 0.060 0.940 40 H 0.086 0.914 41 H 0.049 0.951 42 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.303 -7.523 1.537 19.848 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.591 5.591 2 C -0.190 4.190 3 Si 0.766 3.234 4 H -0.192 1.192 5 H -0.206 1.206 6 H -0.174 1.174 7 C -0.544 4.544 8 H 0.048 0.952 9 C 0.052 3.948 10 N -0.241 5.241 11 C -0.026 4.026 12 C -0.119 4.119 13 C -0.135 4.135 14 C -0.157 4.157 15 C -0.126 4.126 16 C -0.180 4.180 17 C 0.073 3.927 18 O -0.307 6.307 19 C -0.026 4.026 20 C -0.196 4.196 21 C -0.151 4.151 22 C -0.155 4.155 23 C -0.142 4.142 24 H 0.074 0.926 25 H 0.040 0.960 26 H 0.002 0.998 27 H 0.114 0.886 28 H 0.054 0.946 29 H 0.139 0.861 30 H 0.162 0.838 31 H 0.169 0.831 32 H 0.158 0.842 33 H 0.255 0.745 34 H 0.069 0.931 35 H 0.095 0.905 36 H 0.061 0.939 37 H 0.100 0.900 38 H 0.076 0.924 39 H 0.079 0.921 40 H 0.104 0.896 41 H 0.068 0.932 42 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 17.338 -7.443 1.920 18.965 hybrid contribution 0.166 1.263 -0.646 1.428 sum 17.504 -6.180 1.275 18.607 Atomic orbital electron populations 1.70063 1.08064 1.27872 1.53111 1.25825 0.95581 1.02947 0.94675 0.85781 0.79577 0.78958 0.79097 1.19229 1.20585 1.17375 1.21239 0.91375 0.92782 1.49020 0.95221 1.19828 0.93854 0.86616 0.94490 1.61863 1.15482 1.21483 1.25271 1.20926 0.89362 1.01550 0.90769 1.20368 1.00034 0.95177 0.96308 1.21184 0.99572 0.96283 0.96414 1.21389 1.01312 1.00089 0.92870 1.21321 0.97890 0.92401 1.01023 1.21668 1.01847 1.00170 0.94320 1.18433 0.95578 0.87577 0.91075 1.84933 1.36532 1.24822 1.84438 1.22639 0.97749 0.95537 0.86626 1.23027 0.99919 0.98724 0.97944 1.22010 1.01921 0.94382 0.96818 1.22108 1.01459 0.97460 0.94479 1.22310 1.01277 0.93667 0.96960 0.92585 0.95975 0.99830 0.88583 0.94605 0.86083 0.83831 0.83087 0.84153 0.74464 0.93071 0.90485 0.93945 0.89980 0.92377 0.92090 0.89557 0.93167 0.90221 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -61.77 13.96 21.45 0.30 -61.47 16 2 C 0.01 0.39 5.47 84.65 0.46 0.85 16 3 Si 0.94 45.94 27.37 68.60 1.88 47.82 16 4 H -0.27 -12.47 7.11 99.48 0.71 -11.76 16 5 H -0.28 -13.31 7.11 99.48 0.71 -12.61 16 6 H -0.25 -11.39 6.69 99.48 0.67 -10.72 16 7 C -0.51 -30.85 8.92 25.60 0.23 -30.63 16 8 H 0.03 2.05 8.01 -2.91 -0.02 2.02 16 9 C 0.18 9.00 3.57 85.56 0.31 9.30 16 10 N -0.52 -22.03 4.39 -872.37 -3.83 -25.86 16 11 C 0.10 3.37 3.30 85.56 0.28 3.65 16 12 C -0.12 -3.91 4.73 -19.77 -0.09 -4.00 16 13 C -0.12 -3.57 8.80 22.25 0.20 -3.38 16 14 C -0.14 -3.64 10.04 22.28 0.22 -3.41 16 15 C -0.11 -2.65 10.04 22.25 0.22 -2.43 16 16 C -0.16 -4.40 9.99 22.37 0.22 -4.18 16 17 C 0.12 3.73 6.68 22.51 0.15 3.88 16 18 O -0.50 -14.75 12.85 -92.49 -1.19 -15.94 16 19 C 0.08 3.23 2.80 46.23 0.13 3.36 16 20 C -0.16 -5.00 5.56 31.70 0.18 -4.82 16 21 C -0.11 -2.82 6.80 31.32 0.21 -2.61 16 22 C -0.12 -2.81 6.80 31.32 0.21 -2.59 16 23 C -0.10 -3.16 6.33 31.67 0.20 -2.96 16 24 H 0.27 16.05 8.31 -92.71 -0.77 15.28 16 25 H 0.02 1.14 5.92 -2.39 -0.01 1.12 16 26 H -0.02 -0.79 6.52 -2.39 -0.02 -0.80 16 27 H 0.10 2.71 5.83 -2.39 -0.01 2.70 16 28 H 0.04 1.16 6.66 -2.39 -0.02 1.14 16 29 H 0.12 3.55 8.00 -2.91 -0.02 3.52 16 30 H 0.14 2.94 8.06 -2.91 -0.02 2.92 16 31 H 0.15 2.68 8.06 -2.91 -0.02 2.65 16 32 H 0.14 3.21 8.06 -2.91 -0.02 3.19 16 33 H 0.40 7.21 9.06 -74.05 -0.67 6.53 16 34 H 0.05 2.45 7.25 -2.38 -0.02 2.43 16 35 H 0.08 2.22 5.78 -2.39 -0.01 2.21 16 36 H 0.04 1.50 7.93 -2.39 -0.02 1.48 16 37 H 0.08 1.63 8.14 -2.39 -0.02 1.61 16 38 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 39 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 40 H 0.09 1.60 8.14 -2.38 -0.02 1.58 16 41 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16 42 H 0.08 2.14 6.10 -2.39 -0.01 2.12 16 Total: -1.00 -74.84 329.56 0.59 -74.24 By element: Atomic # 1 Polarization: 20.88 SS G_CDS: 0.30 Total: 21.18 kcal Atomic # 6 Polarization: -43.11 SS G_CDS: 3.13 Total: -39.98 kcal Atomic # 7 Polarization: -83.80 SS G_CDS: -3.53 Total: -87.33 kcal Atomic # 8 Polarization: -14.75 SS G_CDS: -1.19 Total: -15.94 kcal Atomic # 14 Polarization: 45.94 SS G_CDS: 1.88 Total: 47.82 kcal Total: -74.84 0.59 -74.24 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000731848129.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.625 kcal (2) G-P(sol) polarization free energy of solvation -74.835 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.211 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.593 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.243 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.618 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds