Wall clock time and date at job start Mon Mar 30 2020 01:43:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38265 * 119.98689 * 2 1 4 4 C 1.38064 * 120.11741 * 180.11552 * 3 2 1 5 5 C 1.39138 * 120.24175 * 359.97438 * 4 3 2 6 6 C 1.38971 * 119.53377 * 359.85861 * 5 4 3 7 7 C 1.38177 * 119.98910 * 180.02562 * 2 1 3 8 8 O 1.36148 * 121.38096 * 180.34552 * 6 5 4 9 9 C 1.43135 * 116.67043 * 345.08549 * 8 6 5 10 10 H 1.09003 * 109.78205 * 285.74323 * 9 8 6 11 11 C 1.53008 * 109.77754 * 164.99352 * 9 8 6 12 12 C 1.53430 * 107.89302 * 45.34580 * 9 8 6 13 13 N 1.39849 * 118.59519 * 179.80897 * 5 4 3 14 14 C 1.46902 * 111.00251 * 284.89683 * 13 5 4 15 15 C 1.52996 * 109.46935 * 66.04288 * 14 13 5 16 16 C 1.53002 * 109.46736 * 179.97438 * 15 14 13 17 17 C 1.50706 * 109.47153 * 179.97438 * 16 15 14 18 18 H 1.07998 * 119.99503 * 0.02562 * 17 16 15 19 19 C 1.37871 * 120.00434 * 180.02562 * 17 16 15 20 20 N 1.31516 * 119.99826 * 359.72891 * 19 17 16 21 21 Si 1.86800 * 120.00406 * 180.02562 * 19 17 16 22 22 H 1.48501 * 109.47364 * 179.72558 * 21 19 17 23 23 H 1.48508 * 109.46883 * 299.72681 * 21 19 17 24 24 H 1.48497 * 109.46870 * 59.72491 * 21 19 17 25 25 H 1.08995 * 109.46907 * 269.97686 * 1 2 3 26 26 H 1.09004 * 109.47018 * 29.97420 * 1 2 3 27 27 H 1.08998 * 109.46914 * 149.97554 * 1 2 3 28 28 H 1.08000 * 119.93716 * 0.10524 * 3 2 1 29 29 H 1.07994 * 119.87991 * 180.02562 * 4 3 2 30 30 H 1.08000 * 119.89460 * 359.97438 * 7 2 1 31 31 H 1.09006 * 109.46796 * 60.00082 * 11 9 8 32 32 H 1.08993 * 109.47249 * 179.97438 * 11 9 8 33 33 H 1.09000 * 109.46769 * 300.00610 * 11 9 8 34 34 H 1.08997 * 109.61805 * 176.99133 * 12 9 8 35 35 H 1.09001 * 109.61807 * 56.44623 * 12 9 8 36 36 H 1.09007 * 109.46896 * 306.04221 * 14 13 5 37 37 H 1.09001 * 109.47104 * 186.04203 * 14 13 5 38 38 H 1.08999 * 109.46983 * 60.00720 * 15 14 13 39 39 H 1.08993 * 109.47310 * 300.00160 * 15 14 13 40 40 H 1.09004 * 109.47178 * 60.00488 * 16 15 14 41 41 H 1.08993 * 109.47411 * 300.00171 * 16 15 14 42 42 H 0.97000 * 120.00236 * 0.27947 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1981 1.1976 0.0000 4 6 3.5787 1.2007 -0.0024 5 6 4.2822 0.0003 -0.0043 6 6 3.5854 -1.2021 -0.0008 7 6 2.1977 -1.1968 -0.0005 8 8 4.2356 -2.3983 0.0045 9 6 5.6287 -2.3737 -0.3229 10 1 5.7532 -2.2163 -1.3943 11 6 6.2798 -3.6970 0.0847 12 6 6.2744 -1.2165 0.4504 13 7 5.6800 0.0437 -0.0108 14 6 6.1892 0.4109 -1.3389 15 6 5.7788 1.8488 -1.6627 16 6 6.3097 2.2314 -3.0457 17 6 5.9051 3.6476 -3.3650 18 1 5.3274 4.2177 -2.6525 19 6 6.2722 4.2153 -4.5665 20 7 6.9803 3.5228 -5.4319 21 14 5.7712 5.9709 -4.9620 22 1 6.2915 6.3444 -6.3018 23 1 4.2898 6.0754 -4.9594 24 1 6.3340 6.8885 -3.9390 25 1 -0.3633 -0.0004 1.0276 26 1 -0.3633 0.8903 -0.5135 27 1 -0.3633 -0.8898 -0.5142 28 1 1.6568 2.1322 0.0017 29 1 4.1146 2.1383 -0.0020 30 1 1.6558 -2.1310 -0.0005 31 1 5.7986 -4.5177 -0.4475 32 1 7.3399 -3.6732 -0.1671 33 1 6.1642 -3.8431 1.1587 34 1 7.3480 -1.2049 0.2627 35 1 6.0880 -1.3401 1.5172 36 1 5.7721 -0.2633 -2.0871 37 1 7.2764 0.3331 -1.3455 38 1 6.1960 2.5229 -0.9146 39 1 4.6917 1.9267 -1.6561 40 1 5.8930 1.5574 -3.7942 41 1 7.3969 2.1537 -3.0519 42 1 7.2407 2.6113 -5.2265 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000748830774.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:43:39 Heat of formation + Delta-G solvation = -24.460109 kcal Electronic energy + Delta-G solvation = -21571.196682 eV Core-core repulsion = 18515.662244 eV Total energy + Delta-G solvation = -3055.534438 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.18678 -37.90558 -36.90733 -34.04622 -33.04877 -31.58609 -31.08037 -29.45099 -26.91453 -26.73252 -24.33058 -22.98153 -22.63930 -22.35798 -20.60301 -19.51847 -17.59090 -16.91785 -16.53649 -16.35004 -15.26824 -14.82806 -14.52244 -14.26204 -14.03615 -13.73203 -13.60753 -13.49915 -13.10722 -12.90417 -12.68950 -12.53244 -12.26590 -12.13272 -11.70621 -11.66003 -11.48840 -11.31008 -10.91602 -10.74588 -10.72738 -10.61984 -10.10612 -9.82132 -9.68344 -9.09231 -8.52907 -8.31633 -8.20032 -7.69486 -6.34787 -4.03454 1.40933 1.56044 3.16056 3.44880 3.47003 3.65481 3.69451 3.91180 4.41257 4.56332 4.77694 4.80745 4.89124 4.99676 5.08859 5.15205 5.32766 5.42643 5.42889 5.48433 5.52774 5.56148 5.58185 5.62598 5.73259 5.77454 5.84875 5.89137 6.07227 6.12940 6.30918 6.35606 6.49833 6.58642 6.69067 6.83691 6.94344 7.08846 7.19279 7.40289 7.52565 7.59410 8.23280 8.47809 8.89936 9.68745 11.05835 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.016344 B = 0.005012 C = 0.004072 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1712.711226 B = 5585.357087 C = 6875.400901 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.071 4.071 3 C -0.140 4.140 4 C -0.073 4.073 5 C 0.030 3.970 6 C 0.088 3.912 7 C -0.140 4.140 8 O -0.311 6.311 9 C 0.046 3.954 10 H 0.074 0.926 11 C -0.140 4.140 12 C 0.023 3.977 13 N -0.489 5.489 14 C 0.055 3.945 15 C -0.108 4.108 16 C 0.010 3.990 17 C -0.598 4.598 18 H 0.049 0.951 19 C 0.014 3.986 20 N -0.914 5.914 21 Si 1.068 2.932 22 H -0.283 1.283 23 H -0.288 1.288 24 H -0.288 1.288 25 H 0.068 0.932 26 H 0.068 0.932 27 H 0.064 0.936 28 H 0.125 0.875 29 H 0.139 0.861 30 H 0.125 0.875 31 H 0.066 0.934 32 H 0.079 0.921 33 H 0.066 0.934 34 H 0.096 0.904 35 H 0.089 0.911 36 H 0.034 0.966 37 H 0.077 0.923 38 H 0.059 0.941 39 H 0.063 0.937 40 H 0.004 0.996 41 H 0.006 0.994 42 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.880 -12.094 13.013 19.051 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.072 4.072 3 C -0.159 4.159 4 C -0.093 4.093 5 C -0.067 4.067 6 C 0.041 3.959 7 C -0.159 4.159 8 O -0.226 6.226 9 C -0.012 4.012 10 H 0.092 0.908 11 C -0.198 4.198 12 C -0.105 4.105 13 N -0.205 5.205 14 C -0.069 4.069 15 C -0.146 4.146 16 C -0.027 4.027 17 C -0.637 4.637 18 H 0.067 0.933 19 C -0.189 4.189 20 N -0.551 5.551 21 Si 0.896 3.104 22 H -0.208 1.208 23 H -0.214 1.214 24 H -0.214 1.214 25 H 0.087 0.913 26 H 0.087 0.913 27 H 0.083 0.917 28 H 0.143 0.857 29 H 0.157 0.843 30 H 0.143 0.857 31 H 0.085 0.915 32 H 0.097 0.903 33 H 0.085 0.915 34 H 0.115 0.885 35 H 0.107 0.893 36 H 0.052 0.948 37 H 0.095 0.905 38 H 0.077 0.923 39 H 0.082 0.918 40 H 0.022 0.978 41 H 0.024 0.976 42 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -6.630 -10.727 12.212 17.554 hybrid contribution -0.024 -1.713 0.609 1.818 sum -6.654 -12.439 12.821 19.063 Atomic orbital electron populations 1.20741 0.90969 1.02784 1.02113 1.19615 0.95855 0.92277 0.99415 1.20868 0.93730 0.97613 1.03649 1.21127 0.93665 0.97272 0.97221 1.18715 0.88770 0.92605 1.06601 1.18963 0.91904 0.84324 1.00712 1.20186 0.90462 0.98362 1.06919 1.86240 1.23252 1.27715 1.85360 1.23109 0.80395 0.98046 0.99693 0.90821 1.21723 1.00301 0.95069 1.02674 1.23004 1.00335 0.86787 1.00393 1.59330 1.03468 1.30119 1.27603 1.22503 0.99586 0.99219 0.85595 1.21849 1.01075 0.91950 0.99729 1.19191 0.95462 0.97081 0.90985 1.22017 1.37993 0.98614 1.05043 0.93299 1.25851 0.94594 1.05554 0.92945 1.70787 1.35236 1.11921 1.37119 0.83557 0.76064 0.74525 0.76210 1.20787 1.21435 1.21417 0.91295 0.91329 0.91702 0.85663 0.84288 0.85682 0.91470 0.90266 0.91462 0.88540 0.89286 0.94815 0.90490 0.92253 0.91826 0.97774 0.97574 0.92221 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.08 10.01 36.01 0.36 -0.72 16 2 C -0.07 -0.95 5.88 -104.63 -0.62 -1.56 16 3 C -0.14 -2.02 9.69 -39.64 -0.38 -2.40 16 4 C -0.07 -1.21 7.61 -39.31 -0.30 -1.50 16 5 C 0.03 0.50 5.06 -83.59 -0.42 0.07 16 6 C 0.09 1.41 6.47 -39.11 -0.25 1.16 16 7 C -0.14 -2.01 9.59 -39.41 -0.38 -2.39 16 8 O -0.31 -4.68 10.06 -20.21 -0.20 -4.89 16 9 C 0.05 0.58 3.44 -26.50 -0.09 0.49 16 10 H 0.07 1.01 6.94 -51.93 -0.36 0.65 16 11 C -0.14 -1.28 9.60 37.16 0.36 -0.92 16 12 C 0.02 0.30 5.33 -3.68 -0.02 0.28 16 13 N -0.49 -7.91 4.66 -170.81 -0.80 -8.70 16 14 C 0.06 0.99 4.58 -3.82 -0.02 0.97 16 15 C -0.11 -2.30 4.10 -26.73 -0.11 -2.41 16 16 C 0.01 0.27 4.28 -27.88 -0.12 0.15 16 17 C -0.60 -17.28 9.11 -34.44 -0.31 -17.59 16 18 H 0.05 1.38 7.74 -52.49 -0.41 0.98 16 19 C 0.01 0.41 5.46 -17.82 -0.10 0.31 16 20 N -0.91 -28.38 13.65 55.43 0.76 -27.62 16 21 Si 1.07 25.57 29.90 -169.99 -5.08 20.49 16 22 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 23 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 24 H -0.29 -6.56 7.11 56.52 0.40 -6.15 16 25 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 26 H 0.07 0.63 8.09 -51.93 -0.42 0.21 16 27 H 0.06 0.58 8.08 -51.93 -0.42 0.16 16 28 H 0.13 1.56 8.06 -52.49 -0.42 1.13 16 29 H 0.14 2.35 6.35 -52.49 -0.33 2.02 16 30 H 0.13 1.56 8.06 -52.49 -0.42 1.14 16 31 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 32 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 34 H 0.10 1.07 7.82 -51.93 -0.41 0.66 16 35 H 0.09 1.11 8.14 -51.93 -0.42 0.69 16 36 H 0.03 0.62 7.11 -51.93 -0.37 0.25 16 37 H 0.08 1.29 7.84 -51.93 -0.41 0.88 16 38 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 39 H 0.06 1.36 5.11 -51.93 -0.27 1.10 16 40 H 0.00 0.11 8.01 -51.93 -0.42 -0.31 16 41 H 0.01 0.16 8.00 -51.93 -0.42 -0.25 16 42 H 0.27 8.27 7.22 -40.82 -0.29 7.97 16 LS Contribution 333.10 15.07 5.02 5.02 Total: -1.00 -32.27 333.10 -9.40 -41.67 By element: Atomic # 1 Polarization: 6.80 SS G_CDS: -6.69 Total: 0.11 kcal Atomic # 6 Polarization: -23.67 SS G_CDS: -2.40 Total: -26.08 kcal Atomic # 7 Polarization: -36.28 SS G_CDS: -0.04 Total: -36.32 kcal Atomic # 8 Polarization: -4.68 SS G_CDS: -0.20 Total: -4.89 kcal Atomic # 14 Polarization: 25.57 SS G_CDS: -5.08 Total: 20.49 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -32.27 -9.40 -41.67 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000748830774.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.209 kcal (2) G-P(sol) polarization free energy of solvation -32.268 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.058 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.402 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.670 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.460 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds