Wall clock time and date at job start Mon Mar 30 2020 01:43:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38265 * 119.98689 * 2 1 4 4 C 1.38064 * 120.11741 * 180.11552 * 3 2 1 5 5 C 1.39138 * 120.24175 * 359.97438 * 4 3 2 6 6 C 1.38971 * 119.53377 * 359.85861 * 5 4 3 7 7 C 1.38177 * 119.98910 * 180.02562 * 2 1 3 8 8 O 1.36148 * 121.38096 * 180.34552 * 6 5 4 9 9 C 1.43135 * 116.67043 * 345.08549 * 8 6 5 10 10 H 1.09003 * 109.78205 * 285.74323 * 9 8 6 11 11 C 1.53008 * 109.77754 * 164.99352 * 9 8 6 12 12 C 1.53430 * 107.89302 * 45.34580 * 9 8 6 13 13 N 1.39849 * 118.59519 * 179.80897 * 5 4 3 14 14 C 1.46902 * 111.00251 * 284.89683 * 13 5 4 15 15 C 1.52996 * 109.46935 * 66.04288 * 14 13 5 16 16 C 1.53002 * 109.46736 * 179.97438 * 15 14 13 17 17 C 1.50706 * 109.47153 * 179.97438 * 16 15 14 18 18 H 1.07998 * 119.99503 * 0.02562 * 17 16 15 19 19 C 1.37871 * 120.00434 * 180.02562 * 17 16 15 20 20 N 1.31516 * 119.99826 * 359.72891 * 19 17 16 21 21 Si 1.86800 * 120.00406 * 180.02562 * 19 17 16 22 22 H 1.48501 * 109.47364 * 179.72558 * 21 19 17 23 23 H 1.48508 * 109.46883 * 299.72681 * 21 19 17 24 24 H 1.48497 * 109.46870 * 59.72491 * 21 19 17 25 25 H 1.08995 * 109.46907 * 269.97686 * 1 2 3 26 26 H 1.09004 * 109.47018 * 29.97420 * 1 2 3 27 27 H 1.08998 * 109.46914 * 149.97554 * 1 2 3 28 28 H 1.08000 * 119.93716 * 0.10524 * 3 2 1 29 29 H 1.07994 * 119.87991 * 180.02562 * 4 3 2 30 30 H 1.08000 * 119.89460 * 359.97438 * 7 2 1 31 31 H 1.09006 * 109.46796 * 60.00082 * 11 9 8 32 32 H 1.08993 * 109.47249 * 179.97438 * 11 9 8 33 33 H 1.09000 * 109.46769 * 300.00610 * 11 9 8 34 34 H 1.08997 * 109.61805 * 176.99133 * 12 9 8 35 35 H 1.09001 * 109.61807 * 56.44623 * 12 9 8 36 36 H 1.09007 * 109.46896 * 306.04221 * 14 13 5 37 37 H 1.09001 * 109.47104 * 186.04203 * 14 13 5 38 38 H 1.08999 * 109.46983 * 60.00720 * 15 14 13 39 39 H 1.08993 * 109.47310 * 300.00160 * 15 14 13 40 40 H 1.09004 * 109.47178 * 60.00488 * 16 15 14 41 41 H 1.08993 * 109.47411 * 300.00171 * 16 15 14 42 42 H 0.97000 * 120.00236 * 0.27947 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1981 1.1976 0.0000 4 6 3.5787 1.2007 -0.0024 5 6 4.2822 0.0003 -0.0043 6 6 3.5854 -1.2021 -0.0008 7 6 2.1977 -1.1968 -0.0005 8 8 4.2356 -2.3983 0.0045 9 6 5.6287 -2.3737 -0.3229 10 1 5.7532 -2.2163 -1.3943 11 6 6.2798 -3.6970 0.0847 12 6 6.2744 -1.2165 0.4504 13 7 5.6800 0.0437 -0.0108 14 6 6.1892 0.4109 -1.3389 15 6 5.7788 1.8488 -1.6627 16 6 6.3097 2.2314 -3.0457 17 6 5.9051 3.6476 -3.3650 18 1 5.3274 4.2177 -2.6525 19 6 6.2722 4.2153 -4.5665 20 7 6.9803 3.5228 -5.4319 21 14 5.7712 5.9709 -4.9620 22 1 6.2915 6.3444 -6.3018 23 1 4.2898 6.0754 -4.9594 24 1 6.3340 6.8885 -3.9390 25 1 -0.3633 -0.0004 1.0276 26 1 -0.3633 0.8903 -0.5135 27 1 -0.3633 -0.8898 -0.5142 28 1 1.6568 2.1322 0.0017 29 1 4.1146 2.1383 -0.0020 30 1 1.6558 -2.1310 -0.0005 31 1 5.7986 -4.5177 -0.4475 32 1 7.3399 -3.6732 -0.1671 33 1 6.1642 -3.8431 1.1587 34 1 7.3480 -1.2049 0.2627 35 1 6.0880 -1.3401 1.5172 36 1 5.7721 -0.2633 -2.0871 37 1 7.2764 0.3331 -1.3455 38 1 6.1960 2.5229 -0.9146 39 1 4.6917 1.9267 -1.6561 40 1 5.8930 1.5574 -3.7942 41 1 7.3969 2.1537 -3.0519 42 1 7.2407 2.6113 -5.2265 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000748830774.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:43:38 Heat of formation + Delta-G solvation = -43.140768 kcal Electronic energy + Delta-G solvation = -21572.006736 eV Core-core repulsion = 18515.662244 eV Total energy + Delta-G solvation = -3056.344493 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.33358 -38.98426 -38.22293 -36.04362 -34.07167 -33.33907 -32.23757 -30.57008 -28.53899 -27.77674 -25.88674 -24.33009 -24.00849 -23.53602 -22.30498 -20.67422 -18.96191 -18.71174 -17.83694 -17.46560 -16.50060 -16.27737 -15.78919 -15.60465 -15.46180 -15.33558 -14.95239 -14.54122 -14.44749 -14.26311 -13.75700 -13.64585 -13.48922 -13.18385 -13.05549 -12.83668 -12.73631 -12.56624 -12.43810 -12.30685 -12.18409 -11.93064 -11.80554 -11.61695 -11.47721 -10.72015 -10.55773 -10.23387 -9.38240 -8.88126 -8.70594 -6.40819 0.25479 0.39020 1.51842 1.60566 1.79936 2.11999 2.48285 2.56970 2.76934 3.14580 3.40515 3.74913 3.78689 3.79554 3.96226 4.03415 4.11376 4.17665 4.25513 4.35063 4.43302 4.46926 4.61909 4.64279 4.71951 4.73300 4.75864 4.85031 4.87019 4.96993 5.02450 5.08848 5.15848 5.20309 5.26794 5.36163 5.46002 5.59846 5.69161 5.85609 5.99388 6.01446 6.16530 6.41582 6.55856 7.41168 8.70294 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.016344 B = 0.005012 C = 0.004072 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1712.711226 B = 5585.357087 C = 6875.400901 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.066 4.066 3 C -0.147 4.147 4 C -0.093 4.093 5 C 0.006 3.994 6 C 0.075 3.925 7 C -0.148 4.148 8 O -0.319 6.319 9 C 0.042 3.958 10 H 0.058 0.942 11 C -0.133 4.133 12 C 0.022 3.978 13 N -0.495 5.495 14 C 0.069 3.931 15 C -0.093 4.093 16 C 0.013 3.987 17 C -0.617 4.617 18 H 0.051 0.949 19 C -0.039 4.039 20 N -0.938 5.938 21 Si 1.117 2.883 22 H -0.283 1.283 23 H -0.269 1.269 24 H -0.268 1.268 25 H 0.087 0.913 26 H 0.076 0.924 27 H 0.076 0.924 28 H 0.143 0.857 29 H 0.126 0.874 30 H 0.143 0.857 31 H 0.069 0.931 32 H 0.100 0.900 33 H 0.075 0.925 34 H 0.116 0.884 35 H 0.096 0.904 36 H 0.022 0.978 37 H 0.087 0.913 38 H 0.056 0.944 39 H 0.060 0.940 40 H -0.018 1.018 41 H -0.008 1.008 42 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.048 -12.310 14.091 20.368 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.066 4.066 3 C -0.166 4.166 4 C -0.113 4.113 5 C -0.090 4.090 6 C 0.028 3.972 7 C -0.167 4.167 8 O -0.234 6.234 9 C -0.016 4.016 10 H 0.076 0.924 11 C -0.190 4.190 12 C -0.105 4.105 13 N -0.212 5.212 14 C -0.056 4.056 15 C -0.131 4.131 16 C -0.025 4.025 17 C -0.654 4.654 18 H 0.069 0.931 19 C -0.236 4.236 20 N -0.575 5.575 21 Si 0.938 3.062 22 H -0.208 1.208 23 H -0.194 1.194 24 H -0.193 1.193 25 H 0.105 0.895 26 H 0.095 0.905 27 H 0.095 0.905 28 H 0.161 0.839 29 H 0.143 0.857 30 H 0.161 0.839 31 H 0.088 0.912 32 H 0.118 0.882 33 H 0.094 0.906 34 H 0.135 0.865 35 H 0.114 0.886 36 H 0.040 0.960 37 H 0.105 0.895 38 H 0.075 0.925 39 H 0.079 0.921 40 H 0.001 0.999 41 H 0.010 0.990 42 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -7.804 -10.972 13.321 18.940 hybrid contribution 0.297 -1.701 0.306 1.754 sum -7.506 -12.673 13.627 20.066 Atomic orbital electron populations 1.20823 0.88154 1.03848 1.03579 1.20038 0.97835 0.91419 0.97333 1.21154 0.93153 0.99046 1.03252 1.21189 0.94758 0.96798 0.98540 1.18861 0.89034 0.93096 1.08026 1.19224 0.92742 0.84395 1.00879 1.20546 0.90111 0.99607 1.06467 1.86236 1.24444 1.27378 1.85329 1.23301 0.79578 0.99890 0.98826 0.92408 1.21741 1.01137 0.92917 1.03198 1.23142 1.01293 0.85412 1.00641 1.59259 1.03663 1.32253 1.26005 1.22211 1.00041 0.96598 0.86731 1.21604 1.00590 0.94253 0.96626 1.19116 0.94449 0.95689 0.93218 1.22451 1.37780 0.99912 1.05286 0.93092 1.27467 0.93776 1.09402 0.92945 1.70924 1.36989 1.11622 1.38009 0.82945 0.76951 0.69878 0.76433 1.20806 1.19365 1.19258 0.89471 0.90465 0.90481 0.83906 0.85653 0.83886 0.91180 0.88156 0.90610 0.86540 0.88554 0.95985 0.89461 0.92534 0.92137 0.99934 0.99006 0.93666 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.82 10.01 71.24 0.71 -1.11 16 2 C -0.07 -1.65 5.88 -19.87 -0.12 -1.77 16 3 C -0.15 -4.15 9.69 22.23 0.22 -3.93 16 4 C -0.09 -3.10 7.61 22.44 0.17 -2.93 16 5 C 0.01 0.21 5.06 38.25 0.19 0.40 16 6 C 0.07 2.36 6.47 22.57 0.15 2.51 16 7 C -0.15 -4.07 9.59 22.38 0.21 -3.86 16 8 O -0.32 -9.38 10.06 -95.23 -0.96 -10.33 16 9 C 0.04 1.02 3.44 30.74 0.11 1.13 16 10 H 0.06 1.59 6.94 -2.39 -0.02 1.58 16 11 C -0.13 -2.16 9.60 71.98 0.69 -1.47 16 12 C 0.02 0.56 5.33 86.47 0.46 1.02 16 13 N -0.50 -16.02 4.66 -694.31 -3.24 -19.25 16 14 C 0.07 2.51 4.58 86.30 0.39 2.91 16 15 C -0.09 -4.05 4.10 30.59 0.13 -3.92 16 16 C 0.01 0.69 4.28 29.85 0.13 0.82 16 17 C -0.62 -36.13 9.11 25.60 0.23 -35.90 16 18 H 0.05 2.90 7.74 -2.91 -0.02 2.88 16 19 C -0.04 -2.30 5.46 84.65 0.46 -1.83 16 20 N -0.94 -59.30 13.65 21.45 0.29 -59.01 16 21 Si 1.12 50.92 29.90 68.60 2.05 52.97 16 22 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 23 H -0.27 -11.33 7.11 99.48 0.71 -10.63 16 24 H -0.27 -11.26 7.11 99.48 0.71 -10.55 16 25 H 0.09 1.20 8.14 -2.39 -0.02 1.18 16 26 H 0.08 1.20 8.09 -2.38 -0.02 1.18 16 27 H 0.08 1.14 8.08 -2.39 -0.02 1.12 16 28 H 0.14 3.37 8.06 -2.91 -0.02 3.35 16 29 H 0.13 4.39 6.35 -2.91 -0.02 4.37 16 30 H 0.14 3.30 8.06 -2.91 -0.02 3.28 16 31 H 0.07 1.11 8.14 -2.38 -0.02 1.09 16 32 H 0.10 1.22 8.14 -2.39 -0.02 1.20 16 33 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 34 H 0.12 2.38 7.82 -2.39 -0.02 2.36 16 35 H 0.10 2.27 8.14 -2.39 -0.02 2.25 16 36 H 0.02 0.84 7.11 -2.38 -0.02 0.82 16 37 H 0.09 2.94 7.84 -2.39 -0.02 2.92 16 38 H 0.06 2.46 8.14 -2.39 -0.02 2.44 16 39 H 0.06 2.67 5.11 -2.39 -0.01 2.65 16 40 H -0.02 -1.01 8.01 -2.39 -0.02 -1.03 16 41 H -0.01 -0.47 8.00 -2.39 -0.02 -0.49 16 42 H 0.25 16.27 7.22 -92.71 -0.67 15.60 16 Total: -1.00 -70.38 333.10 3.37 -67.01 By element: Atomic # 1 Polarization: 15.46 SS G_CDS: 1.09 Total: 16.55 kcal Atomic # 6 Polarization: -52.07 SS G_CDS: 4.14 Total: -47.93 kcal Atomic # 7 Polarization: -75.32 SS G_CDS: -2.94 Total: -78.26 kcal Atomic # 8 Polarization: -9.38 SS G_CDS: -0.96 Total: -10.33 kcal Atomic # 14 Polarization: 50.92 SS G_CDS: 2.05 Total: 52.97 kcal Total: -70.38 3.37 -67.01 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000748830774.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.868 kcal (2) G-P(sol) polarization free energy of solvation -70.383 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.515 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.374 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.009 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.141 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds