Wall clock time and date at job start Mon Mar 30 2020 01:43:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.38262 * 119.99072 * 2 1 4 4 C 1.38064 * 120.11751 * 180.21961 * 3 2 1 5 5 C 1.39140 * 120.24062 * 359.69245 * 4 3 2 6 6 C 1.38956 * 119.53680 * 0.15226 * 5 4 3 7 7 C 1.38177 * 119.98400 * 179.74379 * 2 1 3 8 8 O 1.36150 * 121.38292 * 179.63052 * 6 5 4 9 9 C 1.43139 * 116.67573 * 14.96048 * 8 6 5 10 10 H 1.09004 * 109.77503 * 74.27611 * 9 8 6 11 11 C 1.52998 * 109.77597 * 195.02178 * 9 8 6 12 12 C 1.53421 * 107.90013 * 314.68114 * 9 8 6 13 13 N 1.39854 * 118.59533 * 180.30244 * 5 4 3 14 14 C 1.46901 * 111.00714 * 75.12437 * 13 5 4 15 15 C 1.53002 * 109.46841 * 295.41235 * 14 13 5 16 16 C 1.53001 * 109.46883 * 179.97438 * 15 14 13 17 17 C 1.50698 * 109.47411 * 180.02562 * 16 15 14 18 18 H 1.08001 * 119.99797 * 359.97438 * 17 16 15 19 19 C 1.37872 * 120.00079 * 180.02562 * 17 16 15 20 20 N 1.31511 * 120.00678 * 359.97438 * 19 17 16 21 21 Si 1.86804 * 119.99797 * 179.97438 * 19 17 16 22 22 H 1.48503 * 109.47242 * 359.97438 * 21 19 17 23 23 H 1.48508 * 109.47059 * 119.99736 * 21 19 17 24 24 H 1.48505 * 109.47400 * 239.99652 * 21 19 17 25 25 H 1.08999 * 109.47534 * 270.25369 * 1 2 3 26 26 H 1.09002 * 109.47117 * 30.24969 * 1 2 3 27 27 H 1.09000 * 109.47541 * 150.25183 * 1 2 3 28 28 H 1.08004 * 119.93704 * 359.91761 * 3 2 1 29 29 H 1.08002 * 119.87771 * 179.67427 * 4 3 2 30 30 H 1.08002 * 119.90055 * 0.05023 * 7 2 1 31 31 H 1.08999 * 109.46854 * 60.00143 * 11 9 8 32 32 H 1.09000 * 109.47074 * 180.02562 * 11 9 8 33 33 H 1.09000 * 109.47359 * 300.00233 * 11 9 8 34 34 H 1.09002 * 109.61625 * 182.98904 * 12 9 8 35 35 H 1.09005 * 109.61536 * 303.34291 * 12 9 8 36 36 H 1.09003 * 109.46726 * 55.40937 * 14 13 5 37 37 H 1.09001 * 109.47505 * 175.41022 * 14 13 5 38 38 H 1.08996 * 109.46991 * 299.99694 * 15 14 13 39 39 H 1.09001 * 109.47373 * 60.00168 * 15 14 13 40 40 H 1.09003 * 109.46903 * 299.99836 * 16 15 14 41 41 H 1.09001 * 109.47286 * 59.99895 * 16 15 14 42 42 H 0.96999 * 120.00830 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1981 1.1975 0.0000 4 6 3.5787 1.2006 -0.0046 5 6 4.2821 0.0001 -0.0028 6 6 3.5853 -1.2022 0.0005 7 6 2.1975 -1.1968 0.0054 8 8 4.2354 -2.3984 -0.0052 9 6 5.6301 -2.3734 0.3159 10 1 5.7593 -2.2140 1.3864 11 6 6.2791 -3.6975 -0.0922 12 6 6.2724 -1.2176 -0.4622 13 7 5.6800 0.0433 -0.0011 14 6 6.1938 0.4126 1.3247 15 6 5.7540 1.8384 1.6631 16 6 6.2886 2.2227 3.0442 17 6 5.8549 3.6269 3.3779 18 1 5.2581 4.1891 2.6750 19 6 6.2210 4.1941 4.5800 20 7 6.9482 3.5098 5.4358 21 14 5.6840 5.9349 4.9933 22 1 4.8806 6.4845 3.8718 23 1 4.8623 5.9190 6.2302 24 1 6.8826 6.7854 5.2062 25 1 -0.3634 0.0046 1.0276 26 1 -0.3633 0.8878 -0.5177 27 1 -0.3634 -0.8922 -0.5099 28 1 1.6569 2.1322 -0.0013 29 1 4.1146 2.1382 -0.0099 30 1 1.6556 -2.1311 0.0087 31 1 6.1587 -3.8456 -1.1653 32 1 7.3405 -3.6732 0.1548 33 1 5.8004 -4.5171 0.4437 34 1 7.3469 -1.2057 -0.2791 35 1 6.0844 -1.3451 -1.5283 36 1 5.7996 -0.2763 2.0719 37 1 7.2825 0.3595 1.3202 38 1 6.1482 2.5272 0.9160 39 1 4.6653 1.8914 1.6677 40 1 5.8940 1.5338 3.7911 41 1 7.3773 2.1696 3.0401 42 1 7.2061 3.9090 6.2814 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000748830779.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:43:42 Heat of formation + Delta-G solvation = -20.541463 kcal Electronic energy + Delta-G solvation = -21545.605246 eV Core-core repulsion = 18490.240733 eV Total energy + Delta-G solvation = -3055.364513 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.12931 -37.85575 -36.82753 -33.74436 -32.98322 -31.57774 -31.06704 -29.42643 -27.11702 -26.73811 -24.50873 -22.92965 -22.63118 -22.30371 -20.28870 -19.45072 -17.51725 -16.78077 -16.30521 -16.16121 -15.21274 -14.78113 -14.56975 -14.28684 -14.17604 -13.96045 -13.52959 -13.44546 -13.02536 -12.69774 -12.52875 -12.30193 -12.19773 -12.07233 -11.74325 -11.58331 -11.39255 -11.29597 -11.03976 -10.80349 -10.66939 -10.50315 -10.36273 -9.69079 -9.35929 -9.14215 -8.93861 -8.35399 -8.14055 -7.63225 -6.00023 -4.02008 1.46315 1.61239 3.21484 3.31320 3.38774 3.43050 3.76158 3.96875 4.45849 4.48055 4.83091 4.86564 4.94707 5.04071 5.14208 5.19538 5.36113 5.38350 5.47330 5.53649 5.58748 5.61964 5.64025 5.70278 5.80278 5.83083 5.89786 5.93510 6.16637 6.20321 6.35963 6.43219 6.61731 6.70151 6.74402 6.90238 7.08805 7.17856 7.26866 7.64076 7.66562 7.80655 7.99551 8.42756 9.04894 9.62144 11.11573 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.016323 B = 0.005015 C = 0.004075 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1714.970234 B = 5582.354293 C = 6869.524648 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.072 4.072 3 C -0.141 4.141 4 C -0.072 4.072 5 C 0.031 3.969 6 C 0.088 3.912 7 C -0.141 4.141 8 O -0.312 6.312 9 C 0.045 3.955 10 H 0.075 0.925 11 C -0.140 4.140 12 C 0.023 3.977 13 N -0.490 5.490 14 C 0.056 3.944 15 C -0.116 4.116 16 C 0.023 3.977 17 C -0.516 4.516 18 H 0.056 0.944 19 C 0.056 3.944 20 N -0.897 5.897 21 Si 0.891 3.109 22 H -0.272 1.272 23 H -0.284 1.284 24 H -0.284 1.284 25 H 0.070 0.930 26 H 0.066 0.934 27 H 0.063 0.937 28 H 0.125 0.875 29 H 0.140 0.860 30 H 0.125 0.875 31 H 0.066 0.934 32 H 0.079 0.921 33 H 0.066 0.934 34 H 0.096 0.904 35 H 0.088 0.912 36 H 0.034 0.966 37 H 0.078 0.922 38 H 0.057 0.943 39 H 0.061 0.939 40 H 0.013 0.987 41 H 0.015 0.985 42 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.452 -12.052 -12.550 18.557 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.072 4.072 3 C -0.159 4.159 4 C -0.092 4.092 5 C -0.066 4.066 6 C 0.041 3.959 7 C -0.160 4.160 8 O -0.226 6.226 9 C -0.013 4.013 10 H 0.093 0.907 11 C -0.198 4.198 12 C -0.105 4.105 13 N -0.206 5.206 14 C -0.068 4.068 15 C -0.153 4.153 16 C -0.015 4.015 17 C -0.555 4.555 18 H 0.074 0.926 19 C -0.145 4.145 20 N -0.536 5.536 21 Si 0.719 3.281 22 H -0.197 1.197 23 H -0.210 1.210 24 H -0.210 1.210 25 H 0.088 0.912 26 H 0.085 0.915 27 H 0.082 0.918 28 H 0.143 0.857 29 H 0.157 0.843 30 H 0.142 0.858 31 H 0.085 0.915 32 H 0.097 0.903 33 H 0.085 0.915 34 H 0.114 0.886 35 H 0.106 0.894 36 H 0.052 0.948 37 H 0.096 0.904 38 H 0.076 0.924 39 H 0.080 0.920 40 H 0.032 0.968 41 H 0.034 0.966 42 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -6.230 -11.855 -12.740 18.484 hybrid contribution -0.141 0.467 0.981 1.096 sum -6.371 -11.388 -11.759 17.565 Atomic orbital electron populations 1.20736 0.91048 1.02478 1.02325 1.19600 0.95798 0.92306 0.99521 1.20858 0.93760 0.97561 1.03756 1.21126 0.93609 0.97301 0.97129 1.18712 0.88846 0.92576 1.06444 1.18961 0.91901 0.84361 1.00693 1.20176 0.90490 0.98317 1.06999 1.86237 1.23154 1.27713 1.85517 1.23109 0.80334 0.98010 0.99815 0.90720 1.21720 1.00327 0.95102 1.02614 1.22982 1.00397 0.86849 1.00289 1.59341 1.03358 1.29934 1.27948 1.22501 0.99657 0.99260 0.85414 1.21995 1.00858 0.92089 1.00377 1.19067 0.96214 0.96343 0.89827 1.21250 1.32757 0.99273 1.02177 0.92584 1.25017 0.95201 0.97813 0.96425 1.69969 1.37561 1.37075 1.09017 0.86553 0.78413 0.84810 0.78340 1.19675 1.21036 1.21026 0.91157 0.91484 0.91808 0.85723 0.84254 0.85752 0.91520 0.90267 0.91508 0.88551 0.89386 0.94758 0.90387 0.92404 0.92033 0.96845 0.96642 0.93088 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.09 10.01 36.00 0.36 -0.73 16 2 C -0.07 -0.96 5.88 -104.64 -0.62 -1.58 16 3 C -0.14 -2.03 9.69 -39.64 -0.38 -2.41 16 4 C -0.07 -1.18 7.53 -39.31 -0.30 -1.48 16 5 C 0.03 0.51 5.05 -83.60 -0.42 0.09 16 6 C 0.09 1.41 6.47 -39.11 -0.25 1.16 16 7 C -0.14 -2.03 9.59 -39.40 -0.38 -2.40 16 8 O -0.31 -4.72 10.06 -20.22 -0.20 -4.92 16 9 C 0.05 0.58 3.44 -26.51 -0.09 0.49 16 10 H 0.07 1.03 6.90 -51.93 -0.36 0.68 16 11 C -0.14 -1.29 9.60 37.16 0.36 -0.94 16 12 C 0.02 0.30 5.33 -3.69 -0.02 0.28 16 13 N -0.49 -7.90 4.67 -170.82 -0.80 -8.70 16 14 C 0.06 1.00 4.60 -3.82 -0.02 0.98 16 15 C -0.12 -2.42 4.03 -26.73 -0.11 -2.53 16 16 C 0.02 0.60 4.97 -27.88 -0.14 0.46 16 17 C -0.52 -14.67 9.11 -34.44 -0.31 -14.99 16 18 H 0.06 1.55 7.74 -52.49 -0.41 1.14 16 19 C 0.06 1.62 5.46 -17.82 -0.10 1.53 16 20 N -0.90 -27.08 13.29 55.43 0.74 -26.35 16 21 Si 0.89 21.75 29.54 -169.99 -5.02 16.73 16 22 H -0.27 -6.49 7.11 56.52 0.40 -6.08 16 23 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 24 H -0.28 -6.86 7.11 56.52 0.40 -6.45 16 25 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 26 H 0.07 0.59 8.09 -51.93 -0.42 0.17 16 27 H 0.06 0.55 8.09 -51.93 -0.42 0.13 16 28 H 0.12 1.55 8.06 -52.48 -0.42 1.13 16 29 H 0.14 2.33 6.37 -52.49 -0.33 2.00 16 30 H 0.12 1.57 8.06 -52.49 -0.42 1.15 16 31 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.10 1.07 7.84 -51.93 -0.41 0.66 16 35 H 0.09 1.10 8.14 -51.93 -0.42 0.68 16 36 H 0.03 0.63 7.06 -51.93 -0.37 0.27 16 37 H 0.08 1.31 7.88 -51.93 -0.41 0.90 16 38 H 0.06 1.21 8.11 -51.93 -0.42 0.79 16 39 H 0.06 1.30 5.13 -51.93 -0.27 1.03 16 40 H 0.01 0.37 8.14 -51.93 -0.42 -0.06 16 41 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 42 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 LS Contribution 334.28 15.07 5.04 5.04 Total: -1.00 -31.43 334.28 -9.42 -40.85 By element: Atomic # 1 Polarization: 6.16 SS G_CDS: -6.75 Total: -0.58 kcal Atomic # 6 Polarization: -19.65 SS G_CDS: -2.42 Total: -22.07 kcal Atomic # 7 Polarization: -34.98 SS G_CDS: -0.06 Total: -35.05 kcal Atomic # 8 Polarization: -4.72 SS G_CDS: -0.20 Total: -4.92 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.02 Total: 16.73 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -31.43 -9.42 -40.85 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000748830779.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.304 kcal (2) G-P(sol) polarization free energy of solvation -31.430 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.126 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.415 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.845 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.541 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds