Wall clock time and date at job start Mon Mar 30 2020 01:43:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.38262 * 119.99072 * 2 1 4 4 C 1.38064 * 120.11751 * 180.21961 * 3 2 1 5 5 C 1.39140 * 120.24062 * 359.69245 * 4 3 2 6 6 C 1.38956 * 119.53680 * 0.15226 * 5 4 3 7 7 C 1.38177 * 119.98400 * 179.74379 * 2 1 3 8 8 O 1.36150 * 121.38292 * 179.63052 * 6 5 4 9 9 C 1.43139 * 116.67573 * 14.96048 * 8 6 5 10 10 H 1.09004 * 109.77503 * 74.27611 * 9 8 6 11 11 C 1.52998 * 109.77597 * 195.02178 * 9 8 6 12 12 C 1.53421 * 107.90013 * 314.68114 * 9 8 6 13 13 N 1.39854 * 118.59533 * 180.30244 * 5 4 3 14 14 C 1.46901 * 111.00714 * 75.12437 * 13 5 4 15 15 C 1.53002 * 109.46841 * 295.41235 * 14 13 5 16 16 C 1.53001 * 109.46883 * 179.97438 * 15 14 13 17 17 C 1.50698 * 109.47411 * 180.02562 * 16 15 14 18 18 H 1.08001 * 119.99797 * 359.97438 * 17 16 15 19 19 C 1.37872 * 120.00079 * 180.02562 * 17 16 15 20 20 N 1.31511 * 120.00678 * 359.97438 * 19 17 16 21 21 Si 1.86804 * 119.99797 * 179.97438 * 19 17 16 22 22 H 1.48503 * 109.47242 * 359.97438 * 21 19 17 23 23 H 1.48508 * 109.47059 * 119.99736 * 21 19 17 24 24 H 1.48505 * 109.47400 * 239.99652 * 21 19 17 25 25 H 1.08999 * 109.47534 * 270.25369 * 1 2 3 26 26 H 1.09002 * 109.47117 * 30.24969 * 1 2 3 27 27 H 1.09000 * 109.47541 * 150.25183 * 1 2 3 28 28 H 1.08004 * 119.93704 * 359.91761 * 3 2 1 29 29 H 1.08002 * 119.87771 * 179.67427 * 4 3 2 30 30 H 1.08002 * 119.90055 * 0.05023 * 7 2 1 31 31 H 1.08999 * 109.46854 * 60.00143 * 11 9 8 32 32 H 1.09000 * 109.47074 * 180.02562 * 11 9 8 33 33 H 1.09000 * 109.47359 * 300.00233 * 11 9 8 34 34 H 1.09002 * 109.61625 * 182.98904 * 12 9 8 35 35 H 1.09005 * 109.61536 * 303.34291 * 12 9 8 36 36 H 1.09003 * 109.46726 * 55.40937 * 14 13 5 37 37 H 1.09001 * 109.47505 * 175.41022 * 14 13 5 38 38 H 1.08996 * 109.46991 * 299.99694 * 15 14 13 39 39 H 1.09001 * 109.47373 * 60.00168 * 15 14 13 40 40 H 1.09003 * 109.46903 * 299.99836 * 16 15 14 41 41 H 1.09001 * 109.47286 * 59.99895 * 16 15 14 42 42 H 0.96999 * 120.00830 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1981 1.1975 0.0000 4 6 3.5787 1.2006 -0.0046 5 6 4.2821 0.0001 -0.0028 6 6 3.5853 -1.2022 0.0005 7 6 2.1975 -1.1968 0.0054 8 8 4.2354 -2.3984 -0.0052 9 6 5.6301 -2.3734 0.3159 10 1 5.7593 -2.2140 1.3864 11 6 6.2791 -3.6975 -0.0922 12 6 6.2724 -1.2176 -0.4622 13 7 5.6800 0.0433 -0.0011 14 6 6.1938 0.4126 1.3247 15 6 5.7540 1.8384 1.6631 16 6 6.2886 2.2227 3.0442 17 6 5.8549 3.6269 3.3779 18 1 5.2581 4.1891 2.6750 19 6 6.2210 4.1941 4.5800 20 7 6.9482 3.5098 5.4358 21 14 5.6840 5.9349 4.9933 22 1 4.8806 6.4845 3.8718 23 1 4.8623 5.9190 6.2302 24 1 6.8826 6.7854 5.2062 25 1 -0.3634 0.0046 1.0276 26 1 -0.3633 0.8878 -0.5177 27 1 -0.3634 -0.8922 -0.5099 28 1 1.6569 2.1322 -0.0013 29 1 4.1146 2.1382 -0.0099 30 1 1.6556 -2.1311 0.0087 31 1 6.1587 -3.8456 -1.1653 32 1 7.3405 -3.6732 0.1548 33 1 5.8004 -4.5171 0.4437 34 1 7.3469 -1.2057 -0.2791 35 1 6.0844 -1.3451 -1.5283 36 1 5.7996 -0.2763 2.0719 37 1 7.2825 0.3595 1.3202 38 1 6.1482 2.5272 0.9160 39 1 4.6653 1.8914 1.6677 40 1 5.8940 1.5338 3.7911 41 1 7.3773 2.1696 3.0401 42 1 7.2061 3.9090 6.2814 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000748830779.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:43:41 Heat of formation + Delta-G solvation = -38.465905 kcal Electronic energy + Delta-G solvation = -21546.382508 eV Core-core repulsion = 18490.240733 eV Total energy + Delta-G solvation = -3056.141775 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.27791 -38.93691 -38.12788 -35.68938 -34.02879 -33.37339 -32.20138 -30.56011 -28.82034 -27.73195 -26.01634 -24.20574 -23.96167 -23.47757 -22.00588 -20.61911 -18.65952 -18.55164 -17.71837 -17.40851 -16.64472 -16.34630 -16.12877 -15.63225 -15.35441 -15.09623 -14.63306 -14.47110 -14.35912 -14.16002 -13.66811 -13.57330 -13.48477 -13.10898 -13.00898 -12.88323 -12.74266 -12.61859 -12.48592 -12.37936 -12.24042 -11.89994 -11.74149 -11.49179 -11.28282 -11.15339 -10.57205 -10.18222 -9.32481 -8.82287 -8.21200 -6.31968 0.30705 0.44112 1.39636 1.39717 1.53375 2.16987 2.39764 2.56898 2.82513 3.12399 3.46138 3.81310 3.84763 3.85747 4.02964 4.08398 4.21778 4.23355 4.31707 4.41113 4.48545 4.59620 4.67926 4.71458 4.75937 4.85225 4.88594 4.90086 4.95297 5.06582 5.12724 5.16553 5.21847 5.25297 5.32968 5.49047 5.63939 5.69602 5.75504 5.82532 5.92268 6.07558 6.24233 6.47029 6.84057 7.37366 8.91138 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.016323 B = 0.005015 C = 0.004075 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1714.970234 B = 5582.354293 C = 6869.524648 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.067 4.067 3 C -0.148 4.148 4 C -0.091 4.091 5 C 0.008 3.992 6 C 0.074 3.926 7 C -0.149 4.149 8 O -0.320 6.320 9 C 0.041 3.959 10 H 0.058 0.942 11 C -0.132 4.132 12 C 0.022 3.978 13 N -0.495 5.495 14 C 0.069 3.931 15 C -0.099 4.099 16 C 0.029 3.971 17 C -0.539 4.539 18 H 0.060 0.940 19 C 0.000 4.000 20 N -0.934 5.934 21 Si 0.964 3.036 22 H -0.261 1.261 23 H -0.278 1.278 24 H -0.277 1.277 25 H 0.077 0.923 26 H 0.081 0.919 27 H 0.079 0.921 28 H 0.143 0.857 29 H 0.128 0.872 30 H 0.142 0.858 31 H 0.074 0.926 32 H 0.100 0.900 33 H 0.069 0.931 34 H 0.116 0.884 35 H 0.095 0.905 36 H 0.021 0.979 37 H 0.087 0.913 38 H 0.057 0.943 39 H 0.059 0.941 40 H -0.014 1.014 41 H -0.005 1.005 42 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.586 -12.115 -13.491 19.656 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.067 4.067 3 C -0.166 4.166 4 C -0.111 4.111 5 C -0.089 4.089 6 C 0.027 3.973 7 C -0.168 4.168 8 O -0.235 6.235 9 C -0.016 4.016 10 H 0.076 0.924 11 C -0.190 4.190 12 C -0.105 4.105 13 N -0.212 5.212 14 C -0.056 4.056 15 C -0.137 4.137 16 C -0.009 4.009 17 C -0.577 4.577 18 H 0.078 0.922 19 C -0.197 4.197 20 N -0.575 5.575 21 Si 0.789 3.211 22 H -0.185 1.185 23 H -0.204 1.204 24 H -0.203 1.203 25 H 0.096 0.904 26 H 0.100 0.900 27 H 0.098 0.902 28 H 0.161 0.839 29 H 0.145 0.855 30 H 0.160 0.840 31 H 0.093 0.907 32 H 0.118 0.882 33 H 0.088 0.912 34 H 0.134 0.866 35 H 0.114 0.886 36 H 0.040 0.960 37 H 0.105 0.895 38 H 0.076 0.924 39 H 0.078 0.922 40 H 0.004 0.996 41 H 0.013 0.987 42 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -7.370 -11.932 -13.702 19.607 hybrid contribution 0.179 0.440 1.265 1.351 sum -7.191 -11.493 -12.437 18.398 Atomic orbital electron populations 1.20816 0.88264 1.04075 1.03237 1.20021 0.97764 0.91467 0.97487 1.21149 0.93211 0.98976 1.03310 1.21200 0.94683 0.96864 0.98351 1.18863 0.89110 0.93071 1.07836 1.19226 0.92738 0.84449 1.00903 1.20533 0.90148 0.99556 1.06583 1.86232 1.24342 1.27409 1.85493 1.23298 0.79529 0.99877 0.98926 0.92367 1.21736 1.01164 0.92949 1.03137 1.23119 1.01354 0.85484 1.00540 1.59271 1.03537 1.32023 1.26339 1.22216 1.00033 0.96820 0.86513 1.21728 1.00462 0.94227 0.97254 1.18945 0.94807 0.95148 0.91994 1.21664 1.32958 1.00396 1.02655 0.92215 1.25963 0.95059 1.02476 0.96223 1.70097 1.38615 1.39190 1.09557 0.85412 0.78250 0.79131 0.78355 1.18503 1.20396 1.20264 0.90395 0.90033 0.90169 0.83924 0.85451 0.84020 0.90655 0.88164 0.91241 0.86565 0.88630 0.96023 0.89469 0.92435 0.92223 0.99612 0.98676 0.92769 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.84 10.01 71.23 0.71 -1.13 16 2 C -0.07 -1.69 5.88 -19.87 -0.12 -1.80 16 3 C -0.15 -4.16 9.69 22.23 0.22 -3.94 16 4 C -0.09 -3.02 7.53 22.45 0.17 -2.85 16 5 C 0.01 0.26 5.05 38.25 0.19 0.45 16 6 C 0.07 2.35 6.47 22.57 0.15 2.50 16 7 C -0.15 -4.13 9.59 22.39 0.21 -3.92 16 8 O -0.32 -9.50 10.06 -95.26 -0.96 -10.45 16 9 C 0.04 1.03 3.44 30.73 0.11 1.13 16 10 H 0.06 1.63 6.90 -2.39 -0.02 1.61 16 11 C -0.13 -2.20 9.60 71.98 0.69 -1.51 16 12 C 0.02 0.56 5.33 86.47 0.46 1.02 16 13 N -0.50 -16.02 4.67 -694.35 -3.24 -19.27 16 14 C 0.07 2.52 4.60 86.30 0.40 2.91 16 15 C -0.10 -4.27 4.03 30.60 0.12 -4.15 16 16 C 0.03 1.55 4.97 29.85 0.15 1.70 16 17 C -0.54 -31.17 9.11 25.60 0.23 -30.93 16 18 H 0.06 3.33 7.74 -2.91 -0.02 3.30 16 19 C 0.00 0.02 5.46 84.65 0.46 0.48 16 20 N -0.93 -57.41 13.29 21.44 0.28 -57.12 16 21 Si 0.96 44.66 29.54 68.60 2.03 46.68 16 22 H -0.26 -11.52 7.11 99.48 0.71 -10.82 16 23 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 24 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 25 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 26 H 0.08 1.18 8.09 -2.39 -0.02 1.16 16 27 H 0.08 1.13 8.09 -2.39 -0.02 1.11 16 28 H 0.14 3.36 8.06 -2.91 -0.02 3.34 16 29 H 0.13 4.39 6.37 -2.91 -0.02 4.38 16 30 H 0.14 3.32 8.06 -2.91 -0.02 3.30 16 31 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 32 H 0.10 1.25 8.14 -2.39 -0.02 1.23 16 33 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 34 H 0.12 2.40 7.84 -2.39 -0.02 2.38 16 35 H 0.10 2.27 8.14 -2.38 -0.02 2.25 16 36 H 0.02 0.83 7.06 -2.39 -0.02 0.81 16 37 H 0.09 2.96 7.88 -2.39 -0.02 2.94 16 38 H 0.06 2.45 8.11 -2.39 -0.02 2.44 16 39 H 0.06 2.59 5.13 -2.39 -0.01 2.58 16 40 H -0.01 -0.85 8.14 -2.39 -0.02 -0.87 16 41 H -0.01 -0.29 8.14 -2.39 -0.02 -0.31 16 42 H 0.26 15.14 8.31 -92.71 -0.77 14.37 16 Total: -1.00 -68.40 334.28 3.25 -65.15 By element: Atomic # 1 Polarization: 14.07 SS G_CDS: 0.99 Total: 15.05 kcal Atomic # 6 Polarization: -44.20 SS G_CDS: 4.16 Total: -40.04 kcal Atomic # 7 Polarization: -73.43 SS G_CDS: -2.96 Total: -76.39 kcal Atomic # 8 Polarization: -9.50 SS G_CDS: -0.96 Total: -10.45 kcal Atomic # 14 Polarization: 44.66 SS G_CDS: 2.03 Total: 46.68 kcal Total: -68.40 3.25 -65.15 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000748830779.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.687 kcal (2) G-P(sol) polarization free energy of solvation -68.403 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.716 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.250 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.153 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.466 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds