Wall clock time and date at job start Mon Mar 30 2020 01:27:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30832 * 1 3 3 Si 1.86796 * 119.99549 * 2 1 4 4 H 1.48503 * 109.47157 * 240.00152 * 3 2 1 5 5 H 1.48503 * 109.47593 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.46866 * 120.00352 * 3 2 1 7 7 C 1.39944 * 119.99915 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99532 * 195.00364 * 7 2 1 9 9 C 1.41396 * 120.00396 * 15.00135 * 7 2 1 10 10 C 1.40721 * 120.24274 * 205.31987 * 9 7 2 11 11 C 1.37611 * 119.74058 * 180.02562 * 10 9 7 12 12 C 1.38637 * 120.25187 * 0.02562 * 11 10 9 13 13 C 1.50699 * 119.75170 * 179.97438 * 12 11 10 14 14 N 1.46901 * 109.47178 * 89.99212 * 13 12 11 15 15 C 1.46905 * 110.99779 * 178.47047 * 14 13 12 16 16 H 1.09003 * 109.46759 * 178.06178 * 15 14 13 17 17 C 1.52995 * 109.47179 * 298.06307 * 15 14 13 18 18 C 1.53009 * 109.47116 * 294.99847 * 17 15 14 19 19 O 1.42897 * 109.47137 * 179.97438 * 18 17 15 20 20 C 1.53001 * 109.47178 * 58.06450 * 15 14 13 21 21 C 1.52993 * 117.49852 * 131.06164 * 20 15 14 22 22 C 1.53000 * 117.49884 * 62.40099 * 20 15 14 23 23 C 1.38634 * 120.50065 * 0.24584 * 12 11 10 24 24 C 1.37621 * 120.24602 * 359.45184 * 23 12 11 25 25 H 0.96992 * 120.00438 * 359.97438 * 1 2 3 26 26 H 1.07993 * 120.12884 * 359.97438 * 10 9 7 27 27 H 1.08006 * 119.87429 * 179.97438 * 11 10 9 28 28 H 1.08993 * 109.47287 * 209.99622 * 13 12 11 29 29 H 1.09009 * 109.46866 * 329.99724 * 13 12 11 30 30 H 1.00898 * 110.99959 * 54.52051 * 14 13 12 31 31 H 1.08995 * 109.47606 * 54.99986 * 17 15 14 32 32 H 1.09005 * 109.47319 * 175.00127 * 17 15 14 33 33 H 1.08992 * 109.47146 * 299.99999 * 18 17 15 34 34 H 1.09000 * 109.46996 * 60.00386 * 18 17 15 35 35 H 0.96695 * 114.00476 * 179.97438 * 19 18 17 36 36 H 1.09001 * 115.54699 * 276.73284 * 20 15 14 37 37 H 1.09002 * 117.50080 * 359.97438 * 21 20 15 38 38 H 1.09001 * 117.50242 * 145.01865 * 21 20 15 39 39 H 1.09002 * 117.49882 * 214.98304 * 22 20 15 40 40 H 1.09001 * 117.50042 * 359.97438 * 22 20 15 41 41 H 1.07996 * 119.87450 * 179.70918 * 23 12 11 42 42 H 1.08004 * 120.12522 * 180.26874 * 24 23 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2422 1.6178 0.0000 4 1 3.0959 1.6965 -1.2125 5 1 1.2772 2.7465 0.0006 6 1 3.0960 1.6964 1.2125 7 6 2.0080 -1.2120 -0.0005 8 1 3.0605 -1.2279 0.2416 9 6 1.3372 -2.4155 -0.3180 10 6 1.8200 -3.6451 0.1670 11 6 1.1593 -4.8103 -0.1488 12 6 0.0228 -4.7758 -0.9419 13 6 -0.6915 -6.0586 -1.2813 14 7 -1.7093 -6.3375 -0.2594 15 6 -2.4521 -7.5645 -0.5772 16 1 -3.1755 -7.7661 0.2128 17 6 -3.1862 -7.3860 -1.9076 18 6 -4.2495 -6.2956 -1.7611 19 8 -4.9348 -6.1285 -3.0039 20 6 -1.4761 -8.7376 -0.6866 21 6 -1.8198 -10.0164 0.0798 22 6 -0.6819 -9.1150 0.5655 23 6 -0.4585 -3.5707 -1.4299 24 6 0.1825 -2.3925 -1.1217 25 1 -0.4850 0.8399 0.0004 26 1 2.7058 -3.6744 0.7839 27 1 1.5282 -5.7553 0.2219 28 1 -1.1715 -5.9607 -2.2549 29 1 0.0272 -6.8777 -1.3113 30 1 -2.3355 -5.5540 -0.1494 31 1 -2.4735 -7.0970 -2.6800 32 1 -3.6645 -8.3246 -2.1875 33 1 -4.9623 -6.5846 -0.9888 34 1 -3.7712 -5.3569 -1.4814 35 1 -5.6250 -5.4516 -2.9846 36 1 -0.9784 -8.8468 -1.6502 37 1 -2.7411 -10.0217 0.6623 38 1 -1.5480 -10.9669 -0.3793 39 1 0.3382 -9.4728 0.4256 40 1 -0.8544 -8.5273 1.4671 41 1 -1.3421 -3.5561 -2.0507 42 1 -0.1967 -1.4543 -1.4993 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000771799718.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:27:20 Heat of formation + Delta-G solvation = -36.267040 kcal Electronic energy + Delta-G solvation = -20908.361508 eV Core-core repulsion = 17852.315083 eV Total energy + Delta-G solvation = -3056.046425 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.16685 -39.14209 -37.69662 -36.28002 -35.26938 -32.77034 -31.20010 -30.79080 -28.19337 -26.43699 -24.97274 -23.14437 -22.83125 -22.51375 -21.86632 -20.32227 -19.19483 -18.44085 -17.43054 -17.04322 -16.49033 -16.23483 -15.78795 -15.54164 -15.48638 -15.03558 -14.76320 -14.32409 -14.24668 -14.00098 -13.77789 -13.37019 -12.98835 -12.79576 -12.68451 -12.48751 -12.36990 -12.30895 -12.21793 -12.01604 -11.60614 -11.35958 -11.24287 -11.06738 -11.02722 -10.95139 -10.91285 -9.38307 -9.24208 -9.08290 -8.59700 -6.32283 0.97116 1.18379 1.37905 1.48988 1.53459 2.21598 2.70762 2.93060 3.21295 3.57401 3.80820 3.92273 3.98310 4.09151 4.20764 4.25689 4.34195 4.35443 4.41311 4.51546 4.60276 4.67694 4.72060 4.78035 4.87699 4.89251 5.04555 5.07408 5.15470 5.17445 5.20738 5.36555 5.41168 5.44520 5.50923 5.73847 5.98178 6.12806 6.22064 6.29432 6.42670 6.54622 6.73267 6.81479 6.96942 7.06833 8.36187 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.022470 B = 0.003965 C = 0.003477 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1245.782341 B = 7059.446956 C = 8051.750073 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.829 5.829 2 C 0.034 3.966 3 Si 0.982 3.018 4 H -0.261 1.261 5 H -0.267 1.267 6 H -0.260 1.260 7 C -0.504 4.504 8 H 0.072 0.928 9 C 0.078 3.922 10 C -0.243 4.243 11 C -0.072 4.072 12 C -0.196 4.196 13 C 0.134 3.866 14 N -0.678 5.678 15 C 0.126 3.874 16 H 0.090 0.910 17 C -0.148 4.148 18 C 0.074 3.926 19 O -0.593 6.593 20 C -0.155 4.155 21 C -0.163 4.163 22 C -0.168 4.168 23 C -0.100 4.100 24 C -0.187 4.187 25 H 0.286 0.714 26 H 0.093 0.907 27 H 0.111 0.889 28 H 0.026 0.974 29 H 0.072 0.928 30 H 0.337 0.663 31 H 0.057 0.943 32 H 0.078 0.922 33 H 0.063 0.937 34 H 0.036 0.964 35 H 0.396 0.604 36 H 0.096 0.904 37 H 0.101 0.899 38 H 0.104 0.896 39 H 0.091 0.909 40 H 0.088 0.912 41 H 0.099 0.901 42 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.762 -12.671 -1.506 14.935 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.455 5.455 2 C -0.180 4.180 3 Si 0.803 3.197 4 H -0.186 1.186 5 H -0.191 1.191 6 H -0.185 1.185 7 C -0.534 4.534 8 H 0.091 0.909 9 C 0.076 3.924 10 C -0.263 4.263 11 C -0.091 4.091 12 C -0.198 4.198 13 C 0.006 3.994 14 N -0.309 5.309 15 C 0.017 3.983 16 H 0.108 0.892 17 C -0.188 4.188 18 C -0.004 4.004 19 O -0.402 6.402 20 C -0.173 4.173 21 C -0.200 4.200 22 C -0.205 4.205 23 C -0.119 4.119 24 C -0.207 4.207 25 H 0.097 0.903 26 H 0.111 0.889 27 H 0.129 0.871 28 H 0.044 0.956 29 H 0.090 0.910 30 H 0.156 0.844 31 H 0.076 0.924 32 H 0.097 0.903 33 H 0.081 0.919 34 H 0.055 0.945 35 H 0.245 0.755 36 H 0.114 0.886 37 H 0.119 0.881 38 H 0.122 0.878 39 H 0.109 0.891 40 H 0.106 0.894 41 H 0.117 0.883 42 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -7.126 -13.305 -1.241 15.144 hybrid contribution -0.471 1.846 -0.499 1.969 sum -7.597 -11.459 -1.740 13.858 Atomic orbital electron populations 1.69865 1.08870 1.30344 1.36431 1.26725 0.95554 1.04372 0.91316 0.85261 0.78761 0.75745 0.79967 1.18586 1.19121 1.18466 1.19824 0.97281 0.92375 1.43941 0.90936 1.17954 0.92196 0.93005 0.89241 1.21193 1.03923 0.93515 1.07662 1.20624 0.95128 0.96484 0.96872 1.19386 0.99565 0.94032 1.06801 1.20439 0.93329 0.93759 0.91875 1.60751 1.17167 1.05713 1.47272 1.21104 0.93127 0.89376 0.94737 0.89176 1.22181 0.97587 0.99372 0.99633 1.22201 0.94366 0.97901 0.85910 1.86408 1.55288 1.63450 1.35021 1.22133 1.02586 0.95854 0.96761 1.23074 0.99972 0.93998 1.03003 1.22780 0.96577 1.03116 0.98054 1.20752 0.98571 0.92751 0.99778 1.21283 0.99858 0.96973 1.02556 0.90301 0.88867 0.87055 0.95567 0.90984 0.84433 0.92395 0.90289 0.91914 0.94535 0.75452 0.88604 0.88079 0.87780 0.89055 0.89360 0.88259 0.88178 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -44.11 10.85 21.83 0.24 -43.87 16 2 C 0.03 1.77 5.20 85.26 0.44 2.21 16 3 Si 0.98 38.99 29.58 68.60 2.03 41.02 16 4 H -0.26 -10.17 7.11 99.48 0.71 -9.46 16 5 H -0.27 -9.97 7.11 99.48 0.71 -9.26 16 6 H -0.26 -10.02 7.11 99.48 0.71 -9.31 16 7 C -0.50 -28.00 9.06 23.46 0.21 -27.79 16 8 H 0.07 3.89 7.89 -2.91 -0.02 3.87 16 9 C 0.08 4.34 5.57 -21.29 -0.12 4.22 16 10 C -0.24 -12.30 9.80 22.73 0.22 -12.08 16 11 C -0.07 -3.22 9.67 22.22 0.21 -3.01 16 12 C -0.20 -8.24 5.40 -19.67 -0.11 -8.35 16 13 C 0.13 4.40 5.16 85.56 0.44 4.84 16 14 N -0.68 -19.61 6.34 -495.56 -3.14 -22.75 16 15 C 0.13 2.85 2.73 44.91 0.12 2.97 16 16 H 0.09 1.85 7.92 -2.39 -0.02 1.83 16 17 C -0.15 -3.35 4.88 30.60 0.15 -3.20 16 18 C 0.07 1.61 6.81 71.99 0.49 2.10 16 19 O -0.59 -13.50 13.66 -148.98 -2.03 -15.54 16 20 C -0.15 -3.30 3.82 -10.80 -0.04 -3.34 16 21 C -0.16 -2.80 10.18 30.62 0.31 -2.48 16 22 C -0.17 -3.59 10.17 30.62 0.31 -3.28 16 23 C -0.10 -4.61 9.67 22.22 0.21 -4.39 16 24 C -0.19 -10.02 8.69 22.73 0.20 -9.83 16 25 H 0.29 13.81 8.30 -92.71 -0.77 13.04 16 26 H 0.09 4.50 8.06 -2.91 -0.02 4.48 16 27 H 0.11 4.36 8.06 -2.91 -0.02 4.34 16 28 H 0.03 0.86 6.11 -2.39 -0.01 0.84 16 29 H 0.07 2.29 6.90 -2.38 -0.02 2.27 16 30 H 0.34 10.13 7.18 -89.70 -0.64 9.49 16 31 H 0.06 1.52 6.17 -2.39 -0.01 1.51 16 32 H 0.08 1.66 8.14 -2.38 -0.02 1.64 16 33 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 34 H 0.04 0.88 6.82 -2.39 -0.02 0.86 16 35 H 0.40 5.50 9.12 -74.06 -0.68 4.82 16 36 H 0.10 2.12 7.94 -2.39 -0.02 2.10 16 37 H 0.10 1.55 8.06 -2.39 -0.02 1.53 16 38 H 0.10 1.51 8.14 -2.39 -0.02 1.49 16 39 H 0.09 1.88 8.14 -2.39 -0.02 1.86 16 40 H 0.09 2.11 8.14 -2.39 -0.02 2.10 16 41 H 0.10 4.14 8.06 -2.91 -0.02 4.12 16 42 H 0.10 5.64 6.12 -2.91 -0.02 5.62 16 Total: -1.00 -61.53 341.97 -0.14 -61.67 By element: Atomic # 1 Polarization: 41.17 SS G_CDS: -0.29 Total: 40.87 kcal Atomic # 6 Polarization: -64.46 SS G_CDS: 3.07 Total: -61.40 kcal Atomic # 7 Polarization: -63.72 SS G_CDS: -2.91 Total: -66.63 kcal Atomic # 8 Polarization: -13.50 SS G_CDS: -2.03 Total: -15.54 kcal Atomic # 14 Polarization: 38.99 SS G_CDS: 2.03 Total: 41.02 kcal Total: -61.53 -0.14 -61.67 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000771799718.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.403 kcal (2) G-P(sol) polarization free energy of solvation -61.530 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.127 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.140 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.670 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.267 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds