Wall clock time and date at job start Mon Mar 30 2020 01:27:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30827 * 1 3 3 Si 1.86798 * 120.00084 * 2 1 4 4 H 1.48496 * 109.47173 * 239.99842 * 3 2 1 5 5 H 1.48498 * 109.47152 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47136 * 119.99818 * 3 2 1 7 7 C 1.39944 * 119.99920 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00241 * 195.41543 * 7 2 1 9 9 C 1.41396 * 120.00166 * 15.41209 * 7 2 1 10 10 C 1.40717 * 120.24430 * 204.95098 * 9 7 2 11 11 C 1.37620 * 119.74505 * 180.02562 * 10 9 7 12 12 C 1.38643 * 120.24674 * 0.02562 * 11 10 9 13 13 C 1.50698 * 119.74926 * 179.97438 * 12 11 10 14 14 N 1.46898 * 109.46826 * 90.00137 * 13 12 11 15 15 C 1.46903 * 110.99845 * 182.25221 * 14 13 12 16 16 H 1.08999 * 109.47156 * 323.73868 * 15 14 13 17 17 C 1.53001 * 109.47267 * 203.73218 * 15 14 13 18 18 C 1.53002 * 109.46670 * 65.00410 * 17 15 14 19 19 O 1.42894 * 109.47235 * 179.97438 * 18 17 15 20 20 C 1.53003 * 109.46844 * 83.73893 * 15 14 13 21 21 C 1.53008 * 117.49798 * 253.29238 * 20 15 14 22 22 C 1.53001 * 117.49812 * 184.63720 * 20 15 14 23 23 C 1.38639 * 120.49857 * 0.25474 * 12 11 10 24 24 C 1.37612 * 120.24866 * 359.44443 * 23 12 11 25 25 H 0.96995 * 119.99887 * 0.02562 * 1 2 3 26 26 H 1.07993 * 120.12998 * 0.02562 * 10 9 7 27 27 H 1.07990 * 119.87780 * 180.02562 * 11 10 9 28 28 H 1.09002 * 109.46932 * 330.00197 * 13 12 11 29 29 H 1.08995 * 109.46915 * 210.00018 * 13 12 11 30 30 H 1.00906 * 111.00043 * 306.20446 * 14 13 12 31 31 H 1.09000 * 109.47282 * 184.99734 * 17 15 14 32 32 H 1.08991 * 109.47308 * 305.00675 * 17 15 14 33 33 H 1.09000 * 109.47425 * 299.99909 * 18 17 15 34 34 H 1.09001 * 109.47166 * 59.99530 * 18 17 15 35 35 H 0.96706 * 114.00224 * 179.97438 * 19 18 17 36 36 H 1.08999 * 115.55274 * 38.95946 * 20 15 14 37 37 H 1.09003 * 117.49726 * 359.97438 * 21 20 15 38 38 H 1.09000 * 117.49851 * 145.02335 * 21 20 15 39 39 H 1.09003 * 117.49878 * 214.98303 * 22 20 15 40 40 H 1.08999 * 117.49776 * 359.96953 * 22 20 15 41 41 H 1.08002 * 119.87039 * 179.70947 * 23 12 11 42 42 H 1.08000 * 120.13052 * 180.27761 * 24 23 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 3.0960 1.6964 -1.2124 5 1 1.2773 2.7464 -0.0006 6 1 3.0960 1.6964 1.2125 7 6 2.0080 -1.2120 0.0005 8 1 3.0588 -1.2287 0.2492 9 6 1.3391 -2.4146 -0.3243 10 6 1.8232 -3.6463 0.1539 11 6 1.1645 -4.8107 -0.1690 12 6 0.0284 -4.7732 -0.9628 13 6 -0.6838 -6.0551 -1.3101 14 7 -1.7020 -6.3411 -0.2906 15 6 -2.3817 -7.6135 -0.5679 16 1 -2.4971 -7.7367 -1.6448 17 6 -3.7603 -7.6106 0.0958 18 6 -4.6353 -6.5350 -0.5510 19 8 -5.9231 -6.5326 0.0684 20 6 -1.5491 -8.7689 -0.0087 21 6 -0.7981 -9.6482 -1.0108 22 6 -2.0353 -10.1918 -0.2917 23 6 -0.4541 -3.5659 -1.4443 24 6 0.1850 -2.3887 -1.1289 25 1 -0.4850 0.8400 -0.0004 26 1 2.7082 -3.6778 0.7720 27 1 1.5339 -5.7571 0.1972 28 1 0.0360 -6.8729 -1.3441 29 1 -1.1632 -5.9521 -2.2835 30 1 -1.2980 -6.3410 0.6341 31 1 -4.2283 -8.5864 -0.0344 32 1 -3.6511 -7.3990 1.1594 33 1 -4.1674 -5.5592 -0.4209 34 1 -4.7445 -6.7466 -1.6147 35 1 -6.5318 -5.8734 -0.2924 36 1 -1.0719 -8.5821 0.9533 37 1 -0.8977 -9.4038 -2.0683 38 1 0.1728 -10.0401 -0.7077 39 1 -1.8778 -10.9411 0.4841 40 1 -2.9486 -10.3047 -0.8758 41 1 -1.3372 -3.5490 -2.0657 42 1 -0.1951 -1.4489 -1.5013 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000771799720.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:27:24 Heat of formation + Delta-G solvation = -39.932335 kcal Electronic energy + Delta-G solvation = -20663.795514 eV Core-core repulsion = 17607.590150 eV Total energy + Delta-G solvation = -3056.205365 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -39.98203 -39.17473 -37.59024 -36.26526 -35.16061 -32.95477 -31.28741 -30.92120 -28.15525 -26.16913 -24.37825 -23.38373 -22.82483 -22.47226 -21.71661 -21.10179 -19.19682 -18.19750 -17.17885 -17.11815 -16.66928 -15.98288 -15.88001 -15.60386 -15.38408 -14.89889 -14.59320 -14.42007 -14.08327 -13.82085 -13.67527 -13.44354 -12.98800 -12.81708 -12.67489 -12.56482 -12.44898 -12.33309 -12.15970 -12.01300 -11.72570 -11.41868 -11.38073 -11.20010 -11.00949 -10.85843 -10.78272 -9.31914 -9.30239 -9.05912 -8.59367 -6.32231 0.98151 1.18229 1.37919 1.49248 1.53528 2.21565 2.72019 2.84714 3.33956 3.45850 3.82645 3.83717 4.05728 4.10594 4.21777 4.33268 4.37039 4.44046 4.46290 4.58967 4.59905 4.72863 4.74280 4.79241 4.88256 4.97759 5.04572 5.09964 5.16389 5.17670 5.24576 5.27607 5.31209 5.43103 5.50094 5.74265 5.97854 6.13091 6.22701 6.33181 6.42472 6.54725 6.74377 6.91987 6.97075 7.07402 8.36185 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.022816 B = 0.003713 C = 0.003297 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1226.890060 B = 7538.497975 C = 8490.244681 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.828 5.828 2 C 0.034 3.966 3 Si 0.982 3.018 4 H -0.261 1.261 5 H -0.267 1.267 6 H -0.260 1.260 7 C -0.505 4.505 8 H 0.073 0.927 9 C 0.078 3.922 10 C -0.243 4.243 11 C -0.085 4.085 12 C -0.197 4.197 13 C 0.135 3.865 14 N -0.682 5.682 15 C 0.126 3.874 16 H 0.080 0.920 17 C -0.096 4.096 18 C 0.081 3.919 19 O -0.597 6.597 20 C -0.191 4.191 21 C -0.178 4.178 22 C -0.164 4.164 23 C -0.087 4.087 24 C -0.190 4.190 25 H 0.286 0.714 26 H 0.093 0.907 27 H 0.113 0.887 28 H 0.037 0.963 29 H 0.066 0.934 30 H 0.339 0.661 31 H 0.077 0.923 32 H 0.055 0.945 33 H 0.044 0.956 34 H 0.049 0.951 35 H 0.394 0.606 36 H 0.097 0.903 37 H 0.095 0.905 38 H 0.095 0.905 39 H 0.101 0.899 40 H 0.101 0.899 41 H 0.102 0.898 42 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.179 -13.765 -2.577 15.307 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.454 5.454 2 C -0.180 4.180 3 Si 0.803 3.197 4 H -0.185 1.185 5 H -0.192 1.192 6 H -0.185 1.185 7 C -0.534 4.534 8 H 0.091 0.909 9 C 0.076 3.924 10 C -0.263 4.263 11 C -0.104 4.104 12 C -0.199 4.199 13 C 0.007 3.993 14 N -0.312 5.312 15 C 0.016 3.984 16 H 0.098 0.902 17 C -0.134 4.134 18 C 0.003 3.997 19 O -0.405 6.405 20 C -0.211 4.211 21 C -0.215 4.215 22 C -0.202 4.202 23 C -0.106 4.106 24 C -0.210 4.210 25 H 0.097 0.903 26 H 0.111 0.889 27 H 0.131 0.869 28 H 0.055 0.945 29 H 0.085 0.915 30 H 0.157 0.843 31 H 0.096 0.904 32 H 0.074 0.926 33 H 0.063 0.937 34 H 0.067 0.933 35 H 0.243 0.757 36 H 0.115 0.885 37 H 0.113 0.887 38 H 0.114 0.886 39 H 0.119 0.881 40 H 0.120 0.880 41 H 0.120 0.880 42 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -6.609 -13.700 -2.537 15.421 hybrid contribution 0.916 0.899 0.146 1.292 sum -5.694 -12.800 -2.392 14.212 Atomic orbital electron populations 1.69876 1.08918 1.30373 1.36259 1.26740 0.95528 1.04436 0.91331 0.85258 0.78749 0.75731 0.79982 1.18516 1.19177 1.18464 1.19828 0.97411 0.92432 1.43767 0.90915 1.17962 0.92198 0.93044 0.89236 1.21156 1.03949 0.93465 1.07731 1.20673 0.95445 0.96583 0.97685 1.19380 0.99044 0.94448 1.06982 1.20441 0.91640 0.92544 0.94632 1.60748 1.32405 1.32131 1.05942 1.21071 0.92088 0.85994 0.99214 0.90230 1.21365 0.93395 0.98626 1.00020 1.22105 0.82767 0.99311 0.95470 1.86373 1.25512 1.63012 1.65648 1.23088 1.04274 0.93125 1.00575 1.23051 0.96818 1.03763 0.97867 1.22963 0.98393 0.95389 1.03429 1.20745 0.97981 0.92537 0.99330 1.21321 0.99903 0.97109 1.02645 0.90293 0.88875 0.86884 0.94509 0.91514 0.84295 0.90447 0.92586 0.93745 0.93317 0.75723 0.88462 0.88676 0.88630 0.88086 0.88018 0.88019 0.88261 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -44.39 10.85 21.83 0.24 -44.16 16 2 C 0.03 1.75 5.19 85.26 0.44 2.19 16 3 Si 0.98 39.01 29.59 68.60 2.03 41.04 16 4 H -0.26 -10.11 7.11 99.48 0.71 -9.40 16 5 H -0.27 -10.02 7.11 99.48 0.71 -9.32 16 6 H -0.26 -10.01 7.11 99.48 0.71 -9.31 16 7 C -0.50 -27.94 9.06 23.46 0.21 -27.73 16 8 H 0.07 3.88 7.89 -2.91 -0.02 3.86 16 9 C 0.08 4.30 5.58 -21.29 -0.12 4.18 16 10 C -0.24 -12.09 9.80 22.73 0.22 -11.86 16 11 C -0.09 -3.65 9.67 22.22 0.21 -3.43 16 12 C -0.20 -8.08 5.39 -19.67 -0.11 -8.18 16 13 C 0.14 4.25 5.60 85.56 0.48 4.73 16 14 N -0.68 -19.55 5.70 -495.58 -2.83 -22.37 16 15 C 0.13 2.84 2.17 44.92 0.10 2.94 16 16 H 0.08 1.74 7.65 -2.39 -0.02 1.72 16 17 C -0.10 -2.19 5.20 30.60 0.16 -2.03 16 18 C 0.08 1.94 6.93 71.98 0.50 2.44 16 19 O -0.60 -14.21 13.66 -148.98 -2.03 -16.24 16 20 C -0.19 -3.81 4.91 -10.79 -0.05 -3.86 16 21 C -0.18 -3.18 10.18 30.62 0.31 -2.86 16 22 C -0.16 -2.66 9.73 30.62 0.30 -2.36 16 23 C -0.09 -4.04 9.67 22.22 0.21 -3.82 16 24 C -0.19 -10.20 8.69 22.73 0.20 -10.01 16 25 H 0.29 13.94 8.30 -92.71 -0.77 13.17 16 26 H 0.09 4.41 8.06 -2.91 -0.02 4.39 16 27 H 0.11 4.10 8.06 -2.92 -0.02 4.08 16 28 H 0.04 1.07 7.86 -2.39 -0.02 1.05 16 29 H 0.07 2.02 8.04 -2.39 -0.02 2.00 16 30 H 0.34 10.21 8.36 -89.69 -0.75 9.46 16 31 H 0.08 1.59 7.45 -2.39 -0.02 1.57 16 32 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 33 H 0.04 1.25 7.75 -2.39 -0.02 1.23 16 34 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16 35 H 0.39 5.96 9.12 -74.05 -0.68 5.28 16 36 H 0.10 2.08 8.00 -2.39 -0.02 2.06 16 37 H 0.09 1.67 8.08 -2.39 -0.02 1.65 16 38 H 0.10 1.63 8.14 -2.39 -0.02 1.61 16 39 H 0.10 1.46 8.14 -2.39 -0.02 1.44 16 40 H 0.10 1.51 7.88 -2.39 -0.02 1.49 16 41 H 0.10 4.30 8.06 -2.91 -0.02 4.28 16 42 H 0.10 5.62 6.10 -2.91 -0.02 5.60 16 Total: -1.00 -61.16 348.12 0.06 -61.09 By element: Atomic # 1 Polarization: 40.74 SS G_CDS: -0.41 Total: 40.32 kcal Atomic # 6 Polarization: -62.76 SS G_CDS: 3.07 Total: -59.69 kcal Atomic # 7 Polarization: -63.94 SS G_CDS: -2.59 Total: -66.53 kcal Atomic # 8 Polarization: -14.21 SS G_CDS: -2.03 Total: -16.24 kcal Atomic # 14 Polarization: 39.01 SS G_CDS: 2.03 Total: 41.04 kcal Total: -61.16 0.06 -61.09 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000771799720.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.162 kcal (2) G-P(sol) polarization free energy of solvation -61.159 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.997 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.065 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.094 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.932 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds