Wall clock time and date at job start Mon Mar 30 2020 02:37:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38294 * 119.94142 * 2 1 4 4 C 1.38119 * 120.05388 * 180.02562 * 3 2 1 5 5 C 1.38747 * 119.94770 * 359.76445 * 4 3 2 6 6 O 1.35906 * 120.06081 * 180.27609 * 5 4 3 7 7 C 1.38718 * 119.88751 * 0.48626 * 5 4 3 8 8 C 1.50692 * 120.02969 * 179.79077 * 7 5 4 9 9 N 1.46901 * 109.47215 * 284.72547 * 8 7 5 10 10 C 1.46848 * 110.99870 * 189.99939 * 9 8 7 11 11 C 1.53042 * 109.51422 * 185.84413 * 10 9 8 12 12 C 1.53127 * 109.27584 * 300.80788 * 11 10 9 13 13 C 1.50697 * 109.57335 * 177.60412 * 12 11 10 14 14 H 1.08000 * 119.99890 * 245.72594 * 13 12 11 15 15 C 1.37884 * 120.00338 * 65.72098 * 13 12 11 16 16 N 1.31509 * 119.99616 * 9.55079 * 15 13 12 17 17 Si 1.86797 * 120.00066 * 189.55695 * 15 13 12 18 18 H 1.48497 * 109.47324 * 94.98917 * 17 15 13 19 19 H 1.48496 * 109.47066 * 214.98889 * 17 15 13 20 20 H 1.48505 * 109.47171 * 334.98853 * 17 15 13 21 21 C 1.53108 * 109.15410 * 57.66662 * 12 11 10 22 22 C 1.46849 * 111.00063 * 314.20797 * 9 8 7 23 23 C 1.38168 * 119.94178 * 359.51711 * 7 5 4 24 24 H 1.08997 * 109.46764 * 269.97701 * 1 2 3 25 25 H 1.09001 * 109.47146 * 29.98043 * 1 2 3 26 26 H 1.09000 * 109.46688 * 149.97944 * 1 2 3 27 27 H 1.08001 * 119.97033 * 0.02562 * 3 2 1 28 28 H 1.08004 * 120.02537 * 180.02562 * 4 3 2 29 29 H 0.96694 * 113.99694 * 270.21050 * 6 5 4 30 30 H 1.08999 * 109.47260 * 164.72364 * 8 7 5 31 31 H 1.09000 * 109.47177 * 44.72789 * 8 7 5 32 32 H 1.08990 * 109.46836 * 305.85393 * 10 9 8 33 33 H 1.09006 * 109.46369 * 65.83489 * 10 9 8 34 34 H 1.08999 * 109.50587 * 60.75379 * 11 10 9 35 35 H 1.08996 * 109.50517 * 180.87911 * 11 10 9 36 36 H 1.09002 * 109.52647 * 297.75894 * 12 11 10 37 37 H 0.97001 * 119.99992 * 179.97438 * 16 15 13 38 38 H 1.09004 * 109.50379 * 182.39679 * 21 12 11 39 39 H 1.09001 * 109.53855 * 62.30413 * 21 12 11 40 40 H 1.09000 * 109.46126 * 294.18081 * 22 9 8 41 41 H 1.09007 * 109.45950 * 54.15597 * 22 9 8 42 42 H 1.07990 * 119.97508 * 180.25337 * 23 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1973 1.1984 0.0000 4 6 3.5785 1.2011 -0.0005 5 6 4.2735 0.0002 0.0039 6 8 5.6325 0.0002 0.0090 7 6 3.5788 -1.2005 -0.0014 8 6 4.3304 -2.5066 -0.0014 9 7 4.8849 -2.7525 -1.3393 10 6 5.4183 -4.1165 -1.4454 11 6 6.1153 -4.2893 -2.7969 12 6 5.1100 -4.0256 -3.9214 13 6 5.8035 -4.1363 -5.2548 14 1 5.9079 -3.2641 -5.8832 15 6 6.3049 -5.3509 -5.6724 16 7 6.0178 -6.4459 -5.0032 17 14 7.3922 -5.4410 -7.1887 18 1 8.8186 -5.3938 -6.7786 19 1 7.1271 -6.7098 -7.9132 20 1 7.0951 -4.2908 -8.0799 21 6 4.5336 -2.6164 -3.7598 22 6 3.8826 -2.4919 -2.3805 23 6 2.1971 -1.1979 -0.0009 24 1 -0.3633 -0.0004 1.0277 25 1 -0.3633 0.8902 -0.5135 26 1 -0.3633 -0.8898 -0.5142 27 1 1.6558 2.1328 0.0004 28 1 4.1171 2.1372 -0.0001 29 1 6.0291 0.0022 -0.8728 30 1 3.6514 -3.3165 0.2650 31 1 5.1417 -2.4589 0.7250 32 1 6.1348 -4.2898 -0.6426 33 1 4.6012 -4.8334 -1.3639 34 1 6.9411 -3.5820 -2.8736 35 1 6.4975 -5.3065 -2.8818 36 1 4.3038 -4.7573 -3.8684 37 1 6.3702 -7.3005 -5.2972 38 1 3.7858 -2.4382 -4.5326 39 1 5.3341 -1.8823 -3.8520 40 1 3.0727 -3.2163 -2.2943 41 1 3.4838 -1.4849 -2.2567 42 1 1.6558 -2.1323 -0.0009 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000781925780.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:37:15 Heat of formation + Delta-G solvation = -31.875050 kcal Electronic energy + Delta-G solvation = -21612.281072 eV Core-core repulsion = 18556.425098 eV Total energy + Delta-G solvation = -3055.855974 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.12164 -37.96594 -36.75366 -34.24632 -32.19711 -31.58727 -30.61239 -29.60673 -26.84574 -26.12184 -24.40041 -22.40477 -22.10700 -21.53141 -20.18150 -18.62443 -18.06358 -16.39566 -16.04067 -15.63414 -15.29600 -14.81618 -14.49568 -14.16138 -13.78859 -13.62006 -13.57040 -13.04444 -12.89247 -12.67266 -12.41994 -12.20248 -11.90788 -11.64262 -11.52584 -11.32125 -11.19529 -10.99984 -10.80089 -10.42897 -10.28873 -10.21566 -10.03882 -9.43585 -8.94584 -8.77447 -8.73827 -8.34621 -8.27762 -7.74825 -5.99005 -3.99700 1.25002 1.32128 3.32393 3.39775 3.42778 3.56302 4.41557 4.46942 4.52695 4.75755 4.81100 4.87171 5.23822 5.25224 5.33285 5.46470 5.51428 5.63379 5.71948 5.72905 5.82295 5.91155 6.00703 6.07480 6.10743 6.19585 6.30694 6.33499 6.52378 6.54030 6.60014 6.64634 6.83317 6.84558 7.05693 7.13678 7.37015 7.59561 7.67628 7.82933 7.85746 8.03276 8.06556 8.49342 9.04262 9.63420 11.10209 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.028379 B = 0.004117 C = 0.004034 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 986.391173 B = 6799.272484 C = 6939.674513 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.100 4.100 3 C -0.110 4.110 4 C -0.147 4.147 5 C 0.123 3.877 6 O -0.495 6.495 7 C -0.095 4.095 8 C 0.095 3.905 9 N -0.527 5.527 10 C 0.058 3.942 11 C -0.098 4.098 12 C 0.046 3.954 13 C -0.512 4.512 14 H 0.054 0.946 15 C 0.063 3.937 16 N -0.890 5.890 17 Si 0.885 3.115 18 H -0.281 1.281 19 H -0.288 1.288 20 H -0.275 1.275 21 C -0.105 4.105 22 C 0.058 3.942 23 C -0.101 4.101 24 H 0.067 0.933 25 H 0.065 0.935 26 H 0.066 0.934 27 H 0.122 0.878 28 H 0.125 0.875 29 H 0.396 0.604 30 H 0.035 0.965 31 H 0.083 0.917 32 H 0.057 0.943 33 H 0.024 0.976 34 H 0.046 0.954 35 H 0.074 0.926 36 H 0.027 0.973 37 H 0.259 0.741 38 H 0.049 0.951 39 H 0.054 0.946 40 H 0.022 0.978 41 H 0.059 0.941 42 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.762 12.074 11.192 18.201 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.100 4.100 3 C -0.128 4.128 4 C -0.165 4.165 5 C 0.078 3.922 6 O -0.306 6.306 7 C -0.096 4.096 8 C -0.032 4.032 9 N -0.252 5.252 10 C -0.069 4.069 11 C -0.136 4.136 12 C 0.028 3.972 13 C -0.551 4.551 14 H 0.072 0.928 15 C -0.138 4.138 16 N -0.529 5.529 17 Si 0.713 3.287 18 H -0.207 1.207 19 H -0.214 1.214 20 H -0.199 1.199 21 C -0.143 4.143 22 C -0.070 4.070 23 C -0.119 4.119 24 H 0.086 0.914 25 H 0.084 0.916 26 H 0.085 0.915 27 H 0.140 0.860 28 H 0.143 0.857 29 H 0.254 0.746 30 H 0.053 0.947 31 H 0.102 0.898 32 H 0.075 0.925 33 H 0.042 0.958 34 H 0.065 0.935 35 H 0.093 0.907 36 H 0.045 0.955 37 H 0.069 0.931 38 H 0.067 0.933 39 H 0.073 0.927 40 H 0.040 0.960 41 H 0.078 0.922 42 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -7.397 12.179 11.715 18.446 hybrid contribution 0.062 -0.744 -1.190 1.405 sum -7.335 11.435 10.525 17.185 Atomic orbital electron populations 1.20756 0.91211 1.02776 1.02082 1.19855 0.96072 0.92988 1.01080 1.20841 0.93534 0.97479 1.00947 1.21394 0.94509 0.97765 1.02847 1.18234 0.83412 0.91277 0.99265 1.84687 1.15405 1.96288 1.34175 1.20182 0.93571 0.95267 1.00571 1.20989 0.97217 0.91969 0.93061 1.62130 1.34687 1.27418 1.01002 1.22249 0.97819 0.86546 1.00311 1.21590 0.98797 1.01843 0.91393 1.18691 0.94321 0.90580 0.93618 1.21182 1.36533 0.94544 1.02802 0.92772 1.24957 0.96388 0.95710 0.96733 1.69966 1.44210 0.98096 1.40599 0.86687 0.81294 0.77374 0.83297 1.20730 1.21420 1.19943 1.21665 0.99020 1.00893 0.92676 1.22189 0.92751 0.98995 0.93059 1.20880 0.92999 0.97737 1.00332 0.91399 0.91646 0.91536 0.86027 0.85659 0.74637 0.94717 0.89837 0.92496 0.95774 0.93519 0.90747 0.95490 0.93139 0.93254 0.92747 0.95958 0.92235 0.86045 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.95 10.01 36.01 0.36 -0.59 16 2 C -0.10 -1.12 5.88 -104.60 -0.62 -1.74 16 3 C -0.11 -1.19 9.69 -39.60 -0.38 -1.58 16 4 C -0.15 -1.75 9.99 -39.44 -0.39 -2.14 16 5 C 0.12 1.69 6.68 -39.22 -0.26 1.43 16 6 O -0.49 -6.77 12.83 -19.44 -0.25 -7.02 16 7 C -0.10 -1.33 3.48 -104.47 -0.36 -1.69 16 8 C 0.10 1.43 5.02 -4.98 -0.03 1.41 16 9 N -0.53 -9.16 4.80 -236.11 -1.13 -10.29 16 10 C 0.06 1.12 5.42 -3.83 -0.02 1.10 16 11 C -0.10 -2.26 5.19 -26.64 -0.14 -2.39 16 12 C 0.05 1.15 2.03 -91.65 -0.19 0.96 16 13 C -0.51 -14.06 8.48 -34.44 -0.29 -14.36 16 14 H 0.05 1.48 7.77 -52.49 -0.41 1.07 16 15 C 0.06 1.76 5.23 -17.82 -0.09 1.67 16 16 N -0.89 -25.58 12.20 55.43 0.68 -24.90 16 17 Si 0.89 21.32 29.55 -169.99 -5.02 16.30 16 18 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 19 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 20 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 21 C -0.10 -2.19 5.32 -26.66 -0.14 -2.34 16 22 C 0.06 1.04 4.92 -3.84 -0.02 1.02 16 23 C -0.10 -1.28 8.70 -39.61 -0.34 -1.62 16 24 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 25 H 0.06 0.48 8.08 -51.93 -0.42 0.06 16 26 H 0.07 0.55 8.08 -51.93 -0.42 0.13 16 27 H 0.12 1.03 8.06 -52.49 -0.42 0.61 16 28 H 0.13 1.28 8.06 -52.48 -0.42 0.85 16 29 H 0.40 4.57 9.06 45.56 0.41 4.98 16 30 H 0.03 0.51 7.89 -51.93 -0.41 0.10 16 31 H 0.08 1.26 8.00 -51.93 -0.42 0.84 16 32 H 0.06 1.01 8.12 -51.93 -0.42 0.59 16 33 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 34 H 0.05 1.08 8.14 -51.93 -0.42 0.66 16 35 H 0.07 1.90 7.00 -51.93 -0.36 1.54 16 36 H 0.03 0.74 8.09 -51.93 -0.42 0.32 16 37 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 38 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 39 H 0.05 1.14 8.14 -51.93 -0.42 0.72 16 40 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 41 H 0.06 1.01 6.20 -51.92 -0.32 0.68 16 42 H 0.12 1.44 8.00 -52.49 -0.42 1.02 16 LS Contribution 336.33 15.07 5.07 5.07 Total: -1.00 -29.28 336.33 -9.70 -38.98 By element: Atomic # 1 Polarization: 8.85 SS G_CDS: -6.12 Total: 2.73 kcal Atomic # 6 Polarization: -17.95 SS G_CDS: -2.92 Total: -20.87 kcal Atomic # 7 Polarization: -34.73 SS G_CDS: -0.46 Total: -35.19 kcal Atomic # 8 Polarization: -6.77 SS G_CDS: -0.25 Total: -7.02 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.02 Total: 16.30 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -29.28 -9.70 -38.98 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000781925780.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.107 kcal (2) G-P(sol) polarization free energy of solvation -29.279 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.172 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.703 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.982 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.875 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds