Wall clock time and date at job start Mon Mar 30 2020 02:37:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38294 * 119.94142 * 2 1 4 4 C 1.38119 * 120.05388 * 180.02562 * 3 2 1 5 5 C 1.38747 * 119.94770 * 359.76445 * 4 3 2 6 6 O 1.35906 * 120.06081 * 180.27609 * 5 4 3 7 7 C 1.38718 * 119.88751 * 0.48626 * 5 4 3 8 8 C 1.50692 * 120.02969 * 179.79077 * 7 5 4 9 9 N 1.46901 * 109.47215 * 284.72547 * 8 7 5 10 10 C 1.46848 * 110.99870 * 189.99939 * 9 8 7 11 11 C 1.53042 * 109.51422 * 185.84413 * 10 9 8 12 12 C 1.53127 * 109.27584 * 300.80788 * 11 10 9 13 13 C 1.50697 * 109.57335 * 177.60412 * 12 11 10 14 14 H 1.08000 * 119.99890 * 245.72594 * 13 12 11 15 15 C 1.37884 * 120.00338 * 65.72098 * 13 12 11 16 16 N 1.31509 * 119.99616 * 9.55079 * 15 13 12 17 17 Si 1.86797 * 120.00066 * 189.55695 * 15 13 12 18 18 H 1.48497 * 109.47324 * 94.98917 * 17 15 13 19 19 H 1.48496 * 109.47066 * 214.98889 * 17 15 13 20 20 H 1.48505 * 109.47171 * 334.98853 * 17 15 13 21 21 C 1.53108 * 109.15410 * 57.66662 * 12 11 10 22 22 C 1.46849 * 111.00063 * 314.20797 * 9 8 7 23 23 C 1.38168 * 119.94178 * 359.51711 * 7 5 4 24 24 H 1.08997 * 109.46764 * 269.97701 * 1 2 3 25 25 H 1.09001 * 109.47146 * 29.98043 * 1 2 3 26 26 H 1.09000 * 109.46688 * 149.97944 * 1 2 3 27 27 H 1.08001 * 119.97033 * 0.02562 * 3 2 1 28 28 H 1.08004 * 120.02537 * 180.02562 * 4 3 2 29 29 H 0.96694 * 113.99694 * 270.21050 * 6 5 4 30 30 H 1.08999 * 109.47260 * 164.72364 * 8 7 5 31 31 H 1.09000 * 109.47177 * 44.72789 * 8 7 5 32 32 H 1.08990 * 109.46836 * 305.85393 * 10 9 8 33 33 H 1.09006 * 109.46369 * 65.83489 * 10 9 8 34 34 H 1.08999 * 109.50587 * 60.75379 * 11 10 9 35 35 H 1.08996 * 109.50517 * 180.87911 * 11 10 9 36 36 H 1.09002 * 109.52647 * 297.75894 * 12 11 10 37 37 H 0.97001 * 119.99992 * 179.97438 * 16 15 13 38 38 H 1.09004 * 109.50379 * 182.39679 * 21 12 11 39 39 H 1.09001 * 109.53855 * 62.30413 * 21 12 11 40 40 H 1.09000 * 109.46126 * 294.18081 * 22 9 8 41 41 H 1.09007 * 109.45950 * 54.15597 * 22 9 8 42 42 H 1.07990 * 119.97508 * 180.25337 * 23 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1973 1.1984 0.0000 4 6 3.5785 1.2011 -0.0005 5 6 4.2735 0.0002 0.0039 6 8 5.6325 0.0002 0.0090 7 6 3.5788 -1.2005 -0.0014 8 6 4.3304 -2.5066 -0.0014 9 7 4.8849 -2.7525 -1.3393 10 6 5.4183 -4.1165 -1.4454 11 6 6.1153 -4.2893 -2.7969 12 6 5.1100 -4.0256 -3.9214 13 6 5.8035 -4.1363 -5.2548 14 1 5.9079 -3.2641 -5.8832 15 6 6.3049 -5.3509 -5.6724 16 7 6.0178 -6.4459 -5.0032 17 14 7.3922 -5.4410 -7.1887 18 1 8.8186 -5.3938 -6.7786 19 1 7.1271 -6.7098 -7.9132 20 1 7.0951 -4.2908 -8.0799 21 6 4.5336 -2.6164 -3.7598 22 6 3.8826 -2.4919 -2.3805 23 6 2.1971 -1.1979 -0.0009 24 1 -0.3633 -0.0004 1.0277 25 1 -0.3633 0.8902 -0.5135 26 1 -0.3633 -0.8898 -0.5142 27 1 1.6558 2.1328 0.0004 28 1 4.1171 2.1372 -0.0001 29 1 6.0291 0.0022 -0.8728 30 1 3.6514 -3.3165 0.2650 31 1 5.1417 -2.4589 0.7250 32 1 6.1348 -4.2898 -0.6426 33 1 4.6012 -4.8334 -1.3639 34 1 6.9411 -3.5820 -2.8736 35 1 6.4975 -5.3065 -2.8818 36 1 4.3038 -4.7573 -3.8684 37 1 6.3702 -7.3005 -5.2972 38 1 3.7858 -2.4382 -4.5326 39 1 5.3341 -1.8823 -3.8520 40 1 3.0727 -3.2163 -2.2943 41 1 3.4838 -1.4849 -2.2567 42 1 1.6558 -2.1323 -0.0009 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000781925780.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:37:15 Heat of formation + Delta-G solvation = -49.878752 kcal Electronic energy + Delta-G solvation = -21613.061771 eV Core-core repulsion = 18556.425098 eV Total energy + Delta-G solvation = -3056.636674 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.15458 -39.46085 -37.69873 -35.93847 -33.83968 -32.51241 -32.06319 -31.21565 -28.32710 -27.09114 -26.00055 -23.90523 -23.32212 -23.01802 -21.29702 -20.35451 -19.06044 -18.44732 -17.10606 -16.77847 -16.61404 -16.32668 -15.98011 -15.48021 -15.01261 -14.75618 -14.68702 -14.40072 -14.34387 -14.19878 -13.61115 -13.43940 -13.25947 -13.07427 -12.92237 -12.72475 -12.44101 -12.41166 -12.27469 -12.17682 -11.99794 -11.89008 -11.39370 -11.20171 -10.74191 -10.67996 -10.40982 -9.78414 -9.31082 -9.14013 -8.11843 -6.19837 0.32338 0.39713 1.40655 1.42510 1.52139 2.44361 2.62132 3.13940 3.18452 3.50143 3.73114 3.90455 4.05655 4.18954 4.25422 4.31463 4.40063 4.46847 4.50780 4.61108 4.71283 4.75973 4.79979 4.86023 4.87425 4.93571 4.96886 5.06150 5.14302 5.22165 5.25603 5.30159 5.40760 5.49868 5.59997 5.63436 5.67483 5.95152 5.97636 5.98960 6.24002 6.26946 6.40230 6.92007 6.92151 7.46810 8.96720 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.028379 B = 0.004117 C = 0.004034 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 986.391173 B = 6799.272484 C = 6939.674513 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.102 4.102 3 C -0.106 4.106 4 C -0.150 4.150 5 C 0.106 3.894 6 O -0.505 6.505 7 C -0.114 4.114 8 C 0.101 3.899 9 N -0.525 5.525 10 C 0.068 3.932 11 C -0.088 4.088 12 C 0.044 3.956 13 C -0.533 4.533 14 H 0.051 0.949 15 C 0.015 3.985 16 N -0.919 5.919 17 Si 0.949 3.051 18 H -0.276 1.276 19 H -0.285 1.285 20 H -0.268 1.268 21 C -0.097 4.097 22 C 0.072 3.928 23 C -0.111 4.111 24 H 0.080 0.920 25 H 0.080 0.920 26 H 0.066 0.934 27 H 0.150 0.850 28 H 0.141 0.859 29 H 0.402 0.598 30 H 0.038 0.962 31 H 0.083 0.917 32 H 0.075 0.925 33 H 0.015 0.985 34 H 0.041 0.959 35 H 0.042 0.958 36 H -0.010 1.010 37 H 0.260 0.740 38 H 0.048 0.952 39 H 0.055 0.945 40 H 0.014 0.986 41 H 0.078 0.922 42 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.483 14.010 11.630 20.087 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.102 4.102 3 C -0.124 4.124 4 C -0.169 4.169 5 C 0.061 3.939 6 O -0.317 6.317 7 C -0.114 4.114 8 C -0.026 4.026 9 N -0.250 5.250 10 C -0.059 4.059 11 C -0.126 4.126 12 C 0.026 3.974 13 C -0.571 4.571 14 H 0.069 0.931 15 C -0.183 4.183 16 N -0.559 5.559 17 Si 0.775 3.225 18 H -0.202 1.202 19 H -0.211 1.211 20 H -0.192 1.192 21 C -0.135 4.135 22 C -0.056 4.056 23 C -0.130 4.130 24 H 0.099 0.901 25 H 0.099 0.901 26 H 0.085 0.915 27 H 0.168 0.832 28 H 0.159 0.841 29 H 0.260 0.740 30 H 0.056 0.944 31 H 0.102 0.898 32 H 0.094 0.906 33 H 0.033 0.967 34 H 0.060 0.940 35 H 0.061 0.939 36 H 0.008 0.992 37 H 0.069 0.931 38 H 0.067 0.933 39 H 0.073 0.927 40 H 0.033 0.967 41 H 0.096 0.904 42 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -8.122 14.130 12.157 20.333 hybrid contribution 0.231 -1.306 -1.306 1.862 sum -7.891 12.824 10.851 18.560 Atomic orbital electron populations 1.20812 0.89226 1.03567 1.03124 1.20200 0.97589 0.92552 0.99838 1.21213 0.93280 0.98570 0.99386 1.21630 0.95171 0.97768 1.02304 1.18446 0.83403 0.91885 1.00209 1.84667 1.15772 1.96364 1.34889 1.20125 0.94124 0.94645 1.02546 1.20932 0.97409 0.93063 0.91202 1.62053 1.34924 1.25726 1.02309 1.22036 0.97709 0.87655 0.98533 1.21351 0.98410 0.99666 0.93172 1.18649 0.93485 0.91898 0.93406 1.21553 1.36945 0.94587 1.04010 0.93065 1.25712 0.97504 0.95379 0.99730 1.70088 1.45082 0.98521 1.42193 0.85683 0.79486 0.77475 0.79878 1.20151 1.21105 1.19213 1.21529 0.99005 0.98265 0.94700 1.22003 0.92228 0.99798 0.91554 1.21029 0.92630 0.98723 1.00635 0.90143 0.90145 0.91515 0.83209 0.84088 0.73972 0.94398 0.89825 0.90631 0.96716 0.94004 0.93901 0.99181 0.93112 0.93337 0.92658 0.96730 0.90352 0.85731 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.54 10.01 71.24 0.71 -0.83 16 2 C -0.10 -2.01 5.88 -19.85 -0.12 -2.13 16 3 C -0.11 -1.98 9.69 22.25 0.22 -1.76 16 4 C -0.15 -3.21 9.99 22.36 0.22 -2.99 16 5 C 0.11 2.72 6.68 22.51 0.15 2.87 16 6 O -0.50 -13.24 12.83 -92.49 -1.19 -14.42 16 7 C -0.11 -3.02 3.48 -19.77 -0.07 -3.09 16 8 C 0.10 2.94 5.02 85.55 0.43 3.37 16 9 N -0.53 -17.91 4.80 -900.93 -4.32 -22.23 16 10 C 0.07 2.64 5.42 86.33 0.47 3.11 16 11 C -0.09 -4.14 5.19 30.65 0.16 -3.98 16 12 C 0.04 2.25 2.03 -11.46 -0.02 2.23 16 13 C -0.53 -29.81 8.48 25.60 0.22 -29.59 16 14 H 0.05 2.82 7.77 -2.91 -0.02 2.80 16 15 C 0.02 0.87 5.23 84.66 0.44 1.31 16 16 N -0.92 -54.16 12.20 21.45 0.26 -53.90 16 17 Si 0.95 44.09 29.55 68.60 2.03 46.11 16 18 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 19 H -0.29 -13.04 7.11 99.48 0.71 -12.33 16 20 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 21 C -0.10 -4.08 5.32 30.64 0.16 -3.92 16 22 C 0.07 2.55 4.92 86.32 0.42 2.98 16 23 C -0.11 -2.63 8.70 22.25 0.19 -2.44 16 24 H 0.08 0.94 8.14 -2.39 -0.02 0.92 16 25 H 0.08 0.89 8.08 -2.39 -0.02 0.87 16 26 H 0.07 0.94 8.08 -2.39 -0.02 0.92 16 27 H 0.15 1.90 8.06 -2.91 -0.02 1.88 16 28 H 0.14 2.49 8.06 -2.91 -0.02 2.47 16 29 H 0.40 8.90 9.06 -74.06 -0.67 8.23 16 30 H 0.04 1.08 7.89 -2.39 -0.02 1.06 16 31 H 0.08 2.44 8.00 -2.39 -0.02 2.42 16 32 H 0.08 2.64 8.12 -2.39 -0.02 2.62 16 33 H 0.01 0.59 8.14 -2.38 -0.02 0.57 16 34 H 0.04 1.97 8.14 -2.39 -0.02 1.95 16 35 H 0.04 2.27 7.00 -2.39 -0.02 2.25 16 36 H -0.01 -0.58 8.09 -2.39 -0.02 -0.60 16 37 H 0.26 14.56 8.31 -92.71 -0.77 13.79 16 38 H 0.05 2.01 8.14 -2.38 -0.02 1.99 16 39 H 0.05 2.30 8.14 -2.39 -0.02 2.28 16 40 H 0.01 0.54 8.14 -2.39 -0.02 0.52 16 41 H 0.08 2.53 6.20 -2.38 -0.01 2.51 16 42 H 0.12 2.78 8.00 -2.92 -0.02 2.75 16 Total: -1.00 -63.25 336.33 0.69 -62.55 By element: Atomic # 1 Polarization: 16.43 SS G_CDS: 0.32 Total: 16.75 kcal Atomic # 6 Polarization: -38.45 SS G_CDS: 3.59 Total: -34.86 kcal Atomic # 7 Polarization: -72.07 SS G_CDS: -4.06 Total: -76.13 kcal Atomic # 8 Polarization: -13.24 SS G_CDS: -1.19 Total: -14.42 kcal Atomic # 14 Polarization: 44.09 SS G_CDS: 2.03 Total: 46.11 kcal Total: -63.25 0.69 -62.55 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000781925780.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.674 kcal (2) G-P(sol) polarization free energy of solvation -63.246 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.571 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.693 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.553 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.879 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds