Wall clock time and date at job start Mon Mar 30 2020 01:43:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52994 * 109.71315 * 2 1 4 4 C 1.53409 * 109.68357 * 120.54189 * 2 1 3 5 5 C 1.53080 * 108.29238 * 54.97257 * 4 2 1 6 6 C 1.50766 * 109.64138 * 48.20930 * 5 4 2 7 7 C 1.38570 * 118.71858 * 162.38782 * 6 5 4 8 8 C 1.38105 * 120.30695 * 179.79939 * 7 6 5 9 9 C 1.50700 * 120.00747 * 179.97438 * 8 7 6 10 10 N 1.46900 * 109.46895 * 270.01794 * 9 8 7 11 11 C 1.46904 * 110.99828 * 180.02562 * 10 9 8 12 12 C 1.50698 * 109.47277 * 180.02562 * 11 10 9 13 13 H 1.08002 * 119.99834 * 359.97438 * 12 11 10 14 14 C 1.37879 * 120.00201 * 180.02562 * 12 11 10 15 15 N 1.31514 * 119.99595 * 359.97438 * 14 12 11 16 16 Si 1.86798 * 119.99998 * 179.97438 * 14 12 11 17 17 H 1.48493 * 109.47042 * 60.00084 * 16 14 12 18 18 H 1.48499 * 109.46874 * 180.02562 * 16 14 12 19 19 H 1.48502 * 109.47049 * 299.99714 * 16 14 12 20 20 C 1.38296 * 119.97860 * 359.95146 * 8 7 6 21 21 C 1.37965 * 119.95831 * 0.07658 * 20 8 7 22 22 C 1.38313 * 121.45596 * 342.23753 * 6 5 4 23 23 O 1.35850 * 121.78927 * 0.36318 * 22 6 5 24 24 H 1.09006 * 109.46844 * 299.45428 * 1 2 3 25 25 H 1.08991 * 109.47309 * 59.45607 * 1 2 3 26 26 H 1.09000 * 109.47364 * 179.46118 * 1 2 3 27 27 H 1.08994 * 109.47443 * 180.53985 * 3 2 1 28 28 H 1.08994 * 109.47382 * 300.54736 * 3 2 1 29 29 H 1.09004 * 109.47371 * 60.54186 * 3 2 1 30 30 H 1.09000 * 109.70455 * 295.27443 * 4 2 1 31 31 H 1.08996 * 109.73416 * 174.68943 * 4 2 1 32 32 H 1.09002 * 109.43851 * 168.25341 * 5 4 2 33 33 H 1.08999 * 109.43751 * 288.17181 * 5 4 2 34 34 H 1.07999 * 119.85345 * 359.75998 * 7 6 5 35 35 H 1.08993 * 109.47315 * 30.02293 * 9 8 7 36 36 H 1.09008 * 109.46658 * 150.02504 * 9 8 7 37 37 H 1.00898 * 111.00219 * 56.05316 * 10 9 8 38 38 H 1.08998 * 109.47061 * 300.00146 * 11 10 9 39 39 H 1.09005 * 109.47153 * 60.00400 * 11 10 9 40 40 H 0.96998 * 119.99857 * 179.97438 * 15 14 12 41 41 H 1.08003 * 120.01568 * 180.02562 * 20 8 7 42 42 H 1.08000 * 119.89067 * 180.02562 * 21 20 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0461 1.4403 0.0000 4 6 2.0467 -0.7340 1.2440 5 6 1.4231 -2.1318 1.2709 6 6 1.5698 -2.7782 -0.0833 7 6 1.4164 -4.1516 -0.1856 8 6 1.5398 -4.7773 -1.4106 9 6 1.3722 -6.2714 -1.5140 10 7 2.6745 -6.9243 -1.3250 11 6 2.5497 -8.3850 -1.4201 12 6 3.9024 -9.0187 -1.2208 13 1 4.7682 -8.3984 -1.0419 14 6 4.0348 -10.3903 -1.2680 15 7 2.9805 -11.1455 -1.4864 16 14 5.7116 -11.1758 -1.0218 17 1 6.2373 -10.8105 0.3181 18 1 5.5856 -12.6522 -1.1190 19 1 6.6448 -10.6891 -2.0694 20 6 1.8166 -4.0322 -2.5423 21 6 1.9709 -2.6646 -2.4461 22 6 1.8488 -2.0311 -1.2133 23 8 2.0111 -0.6835 -1.1582 24 1 -0.3633 0.5054 0.8949 25 1 -0.3633 0.5222 -0.8850 26 1 -0.3634 -1.0276 -0.0097 27 1 3.1360 1.4357 -0.0097 28 1 1.6770 1.9585 -0.8850 29 1 1.6929 1.9528 0.8948 30 1 1.7580 -0.1857 2.1407 31 1 3.1326 -0.8170 1.1979 32 1 1.9292 -2.7405 2.0202 33 1 0.3654 -2.0523 1.5221 34 1 1.2000 -4.7356 0.6967 35 1 0.6793 -6.6133 -0.7454 36 1 0.9778 -6.5254 -2.4980 37 1 3.0909 -6.6531 -0.4469 38 1 1.8648 -8.7419 -0.6510 39 1 2.1636 -8.6534 -2.4035 40 1 3.0736 -12.1104 -1.5199 41 1 1.9128 -4.5209 -3.5007 42 1 2.1866 -2.0838 -3.3307 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000787299029.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:43:45 Heat of formation + Delta-G solvation = -50.870083 kcal Electronic energy + Delta-G solvation = -20829.662644 eV Core-core repulsion = 17772.982983 eV Total energy + Delta-G solvation = -3056.679661 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.93163 -39.30087 -36.89434 -35.77278 -34.68379 -33.39031 -31.61734 -29.87559 -28.56777 -28.22598 -25.80969 -24.89128 -23.55624 -23.43808 -22.42398 -19.81606 -18.64640 -18.34737 -17.40806 -16.79480 -16.39440 -16.09063 -16.05807 -15.70879 -15.30378 -15.13628 -14.85979 -14.40193 -14.16302 -14.09262 -13.63726 -13.42384 -13.33495 -13.20980 -12.97099 -12.94299 -12.75752 -12.72477 -12.58966 -12.27884 -12.14236 -11.98472 -11.64117 -11.53924 -11.29140 -11.12928 -10.66676 -9.71699 -9.20095 -8.94201 -8.23179 -6.34873 0.39276 0.43423 1.40765 1.44671 1.52729 2.28834 2.39685 2.74131 3.09722 3.59501 3.69668 3.73449 3.80593 3.89008 3.97359 4.02291 4.23003 4.30361 4.39828 4.52231 4.56265 4.62939 4.72090 4.72270 4.79019 4.85783 4.88990 4.93645 5.05299 5.07742 5.12144 5.15193 5.22146 5.23688 5.33064 5.36230 5.50430 5.59373 5.74805 5.87084 6.00462 6.42243 6.58811 6.68352 6.86364 7.35978 8.88100 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.035617 B = 0.003103 C = 0.003051 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 785.943852 B = 9021.719659 C = 9175.572074 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.100 3.900 3 C -0.135 4.135 4 C -0.143 4.143 5 C -0.078 4.078 6 C -0.162 4.162 7 C -0.086 4.086 8 C -0.114 4.114 9 C 0.103 3.897 10 N -0.683 5.683 11 C 0.208 3.792 12 C -0.538 4.538 13 H 0.063 0.937 14 C 0.002 3.998 15 N -0.934 5.934 16 Si 0.974 3.026 17 H -0.265 1.265 18 H -0.281 1.281 19 H -0.269 1.269 20 C -0.076 4.076 21 C -0.159 4.159 22 C 0.124 3.876 23 O -0.325 6.325 24 H 0.095 0.905 25 H 0.062 0.938 26 H 0.051 0.949 27 H 0.061 0.939 28 H 0.065 0.935 29 H 0.102 0.898 30 H 0.111 0.889 31 H 0.066 0.934 32 H 0.086 0.914 33 H 0.091 0.909 34 H 0.128 0.872 35 H 0.028 0.972 36 H 0.067 0.933 37 H 0.334 0.666 38 H -0.037 1.037 39 H 0.002 0.998 40 H 0.266 0.734 41 H 0.130 0.870 42 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.356 25.886 6.038 27.115 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.063 3.937 3 C -0.192 4.192 4 C -0.180 4.180 5 C -0.115 4.115 6 C -0.163 4.163 7 C -0.105 4.105 8 C -0.115 4.115 9 C -0.025 4.025 10 N -0.314 5.314 11 C 0.081 3.919 12 C -0.576 4.576 13 H 0.081 0.919 14 C -0.196 4.196 15 N -0.574 5.574 16 Si 0.798 3.202 17 H -0.190 1.190 18 H -0.206 1.206 19 H -0.194 1.194 20 C -0.094 4.094 21 C -0.178 4.178 22 C 0.078 3.922 23 O -0.240 6.240 24 H 0.114 0.886 25 H 0.081 0.919 26 H 0.070 0.930 27 H 0.081 0.919 28 H 0.084 0.916 29 H 0.121 0.879 30 H 0.129 0.871 31 H 0.085 0.915 32 H 0.104 0.896 33 H 0.109 0.891 34 H 0.146 0.854 35 H 0.046 0.954 36 H 0.086 0.914 37 H 0.150 0.850 38 H -0.019 1.019 39 H 0.020 0.980 40 H 0.075 0.925 41 H 0.148 0.852 42 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -5.154 25.907 5.224 26.927 hybrid contribution 0.073 -1.371 0.703 1.542 sum -5.082 24.537 5.927 25.749 Atomic orbital electron populations 1.22407 0.93836 1.02690 1.03991 1.22218 0.94537 0.93284 0.83689 1.21812 1.01937 0.91281 1.04175 1.22272 1.00923 0.95740 0.99108 1.20582 1.02627 0.95953 0.92316 1.19977 1.06732 0.93777 0.95823 1.20947 0.98763 0.93669 0.97078 1.19696 1.03115 0.94513 0.94163 1.20770 0.90905 0.90177 1.00690 1.60602 1.22261 1.08576 1.39938 1.19229 0.95537 0.83279 0.93894 1.21507 0.94909 0.92053 1.49166 0.91902 1.25960 1.01284 0.97781 0.94618 1.70081 1.31480 1.05417 1.50404 0.85370 0.78758 0.76903 0.79179 1.19028 1.20615 1.19386 1.20903 0.96977 0.92801 0.98733 1.20718 1.06299 0.94414 0.96324 1.18701 0.97156 0.82956 0.93342 1.86002 1.77235 1.16398 1.44405 0.88578 0.91908 0.92964 0.91950 0.91551 0.87912 0.87057 0.91527 0.89594 0.89082 0.85416 0.95404 0.91447 0.84951 1.01920 0.98017 0.92524 0.85172 0.84374 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.48 8.15 71.98 0.59 -1.90 16 2 C 0.10 1.65 1.13 -10.66 -0.01 1.64 16 3 C -0.14 -1.58 8.88 71.98 0.64 -0.94 16 4 C -0.14 -2.16 5.10 30.76 0.16 -2.00 16 5 C -0.08 -1.42 5.21 29.90 0.16 -1.27 16 6 C -0.16 -4.15 5.17 -19.75 -0.10 -4.26 16 7 C -0.09 -2.47 9.32 22.32 0.21 -2.27 16 8 C -0.11 -3.72 5.39 -19.88 -0.11 -3.83 16 9 C 0.10 3.92 5.81 85.56 0.50 4.42 16 10 N -0.68 -31.06 6.48 -521.97 -3.38 -34.44 16 11 C 0.21 11.52 5.44 85.56 0.47 11.98 16 12 C -0.54 -31.53 9.32 25.60 0.24 -31.30 16 13 H 0.06 3.59 7.81 -2.91 -0.02 3.57 16 14 C 0.00 0.11 5.46 84.66 0.46 0.57 16 15 N -0.93 -57.22 13.29 21.45 0.28 -56.93 16 16 Si 0.97 44.94 29.54 68.60 2.03 46.96 16 17 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 18 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 19 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 20 C -0.08 -2.32 9.70 22.22 0.22 -2.10 16 21 C -0.16 -4.48 9.94 22.42 0.22 -4.25 16 22 C 0.12 3.36 6.02 22.50 0.14 3.50 16 23 O -0.33 -7.95 9.67 -91.86 -0.89 -8.84 16 24 H 0.10 0.87 8.14 -2.38 -0.02 0.85 16 25 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 26 H 0.05 0.92 5.88 -2.39 -0.01 0.91 16 27 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 28 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 29 H 0.10 0.65 8.14 -2.38 -0.02 0.63 16 30 H 0.11 1.01 8.14 -2.39 -0.02 0.99 16 31 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 32 H 0.09 1.48 8.14 -2.39 -0.02 1.46 16 33 H 0.09 1.41 7.00 -2.39 -0.02 1.39 16 34 H 0.13 3.38 8.06 -2.91 -0.02 3.36 16 35 H 0.03 1.04 8.08 -2.39 -0.02 1.02 16 36 H 0.07 2.58 8.09 -2.38 -0.02 2.56 16 37 H 0.33 14.58 8.72 -89.70 -0.78 13.80 16 38 H -0.04 -2.16 8.14 -2.39 -0.02 -2.18 16 39 H 0.00 0.10 8.14 -2.38 -0.02 0.08 16 40 H 0.27 15.26 8.31 -92.71 -0.77 14.49 16 41 H 0.13 3.84 8.06 -2.91 -0.02 3.81 16 42 H 0.14 3.41 8.06 -2.91 -0.02 3.39 16 Total: -1.00 -67.74 339.80 2.01 -65.73 By element: Atomic # 1 Polarization: 19.31 SS G_CDS: 0.21 Total: 19.52 kcal Atomic # 6 Polarization: -35.76 SS G_CDS: 3.76 Total: -32.00 kcal Atomic # 7 Polarization: -88.28 SS G_CDS: -3.10 Total: -91.37 kcal Atomic # 8 Polarization: -7.95 SS G_CDS: -0.89 Total: -8.84 kcal Atomic # 14 Polarization: 44.94 SS G_CDS: 2.03 Total: 46.96 kcal Total: -67.74 2.01 -65.73 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787299029.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.860 kcal (2) G-P(sol) polarization free energy of solvation -67.745 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.885 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.015 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.730 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.870 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds