Wall clock time and date at job start Mon Mar 30 2020 01:43:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38249 * 119.98556 * 2 1 4 4 C 1.38070 * 120.11739 * 179.87330 * 3 2 1 5 5 C 1.39147 * 120.24021 * 0.07332 * 4 3 2 6 6 C 1.38964 * 119.53023 * 0.13332 * 5 4 3 7 7 C 1.38179 * 119.98251 * 180.02562 * 2 1 3 8 8 O 1.36158 * 121.37817 * 179.69871 * 6 5 4 9 9 C 1.43139 * 116.66254 * 14.91988 * 8 6 5 10 10 C 1.53429 * 107.88912 * 314.63748 * 9 8 6 11 11 N 1.39851 * 118.58948 * 180.19259 * 5 4 3 12 12 C 1.46899 * 110.99936 * 324.60815 * 11 5 4 13 13 C 1.52998 * 109.47161 * 176.05326 * 12 11 5 14 14 H 1.09003 * 109.47244 * 56.14974 * 13 12 11 15 15 C 1.53000 * 109.47071 * 296.15290 * 13 12 11 16 16 C 1.52998 * 109.47421 * 176.15651 * 13 12 11 17 17 C 1.50696 * 109.47256 * 185.00135 * 16 13 12 18 18 H 1.08001 * 120.00490 * 359.97438 * 17 16 13 19 19 C 1.37881 * 119.99984 * 180.02562 * 17 16 13 20 20 N 1.31510 * 120.00252 * 359.71521 * 19 17 16 21 21 Si 1.86803 * 120.00102 * 179.97438 * 19 17 16 22 22 H 1.48501 * 109.46644 * 269.72166 * 21 19 17 23 23 H 1.48497 * 109.47047 * 29.71904 * 21 19 17 24 24 H 1.48488 * 109.47419 * 149.72274 * 21 19 17 25 25 H 1.08999 * 109.46876 * 269.97667 * 1 2 3 26 26 H 1.08994 * 109.47166 * 29.97864 * 1 2 3 27 27 H 1.09000 * 109.46744 * 149.97703 * 1 2 3 28 28 H 1.07999 * 119.94479 * 359.89701 * 3 2 1 29 29 H 1.07999 * 119.88336 * 180.02562 * 4 3 2 30 30 H 1.07995 * 119.90316 * 0.02562 * 7 2 1 31 31 H 1.09005 * 109.77657 * 195.04009 * 9 8 6 32 32 H 1.08998 * 109.78172 * 74.23807 * 9 8 6 33 33 H 1.09000 * 109.61568 * 303.54209 * 10 9 8 34 34 H 1.09000 * 109.61187 * 183.01826 * 10 9 8 35 35 H 1.09003 * 109.47224 * 56.05587 * 12 11 5 36 36 H 1.08999 * 109.47142 * 296.04980 * 12 11 5 37 37 H 1.09000 * 109.47262 * 54.81401 * 15 13 12 38 38 H 1.09005 * 109.47419 * 174.81027 * 15 13 12 39 39 H 1.09000 * 109.47347 * 294.81488 * 15 13 12 40 40 H 1.08997 * 109.47272 * 64.99392 * 16 13 12 41 41 H 1.09002 * 109.46717 * 304.99547 * 16 13 12 42 42 H 0.97010 * 119.99929 * 0.28514 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1980 1.1974 0.0000 4 6 3.5786 1.2006 0.0026 5 6 4.2822 0.0001 0.0038 6 6 3.5853 -1.2022 -0.0006 7 6 2.1975 -1.1969 -0.0005 8 8 4.2355 -2.3984 -0.0058 9 6 5.6285 -2.3738 0.3228 10 6 6.2746 -1.2165 -0.4500 11 7 5.6800 0.0436 0.0106 12 6 6.1752 1.1789 -0.7792 13 6 7.6994 1.2515 -0.6679 14 1 8.1323 0.3019 -0.9828 15 6 8.0919 1.5343 0.7836 16 6 8.2236 2.3738 -1.5658 17 6 9.7305 2.3663 -1.5516 18 1 10.2613 1.6344 -0.9608 19 6 10.4316 3.2944 -2.2919 20 7 9.7853 4.1827 -3.0150 21 14 12.2995 3.2855 -2.2737 22 1 12.7879 4.1645 -1.1810 23 1 12.7857 1.9004 -2.0495 24 1 12.8096 3.7845 -3.5759 25 1 -0.3633 -0.0004 1.0277 26 1 -0.3633 0.8901 -0.5135 27 1 -0.3633 -0.8898 -0.5142 28 1 1.6568 2.1321 -0.0017 29 1 4.1146 2.1383 0.0030 30 1 1.6557 -2.1311 -0.0014 31 1 6.0927 -3.3162 0.0320 32 1 5.7520 -2.2163 1.3943 33 1 6.0892 -1.3403 -1.5169 34 1 7.3482 -1.2050 -0.2615 35 1 5.7389 2.1031 -0.4001 36 1 5.8932 1.0455 -1.8236 37 1 7.6411 0.7852 1.4345 38 1 9.1768 1.4947 0.8811 39 1 7.7373 2.5246 1.0695 40 1 7.8615 3.3334 -1.1969 41 1 7.8692 2.2192 -2.5849 42 1 8.8153 4.1876 -3.0242 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000787777526.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:43:32 Heat of formation + Delta-G solvation = -24.773584 kcal Electronic energy + Delta-G solvation = -21415.799602 eV Core-core repulsion = 18360.251570 eV Total energy + Delta-G solvation = -3055.548032 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.06721 -37.79362 -37.47617 -34.67766 -32.40283 -31.90504 -30.46674 -29.02807 -26.89150 -26.38233 -24.96324 -23.84860 -22.81693 -21.81286 -20.09323 -19.14350 -17.68033 -17.07530 -16.60682 -16.54263 -15.13159 -14.83725 -14.44560 -14.28958 -14.07607 -13.88692 -13.73579 -13.59737 -13.44983 -13.16928 -12.50935 -12.29332 -11.93181 -11.78232 -11.72764 -11.58296 -11.36116 -11.07389 -10.90032 -10.73733 -10.59292 -10.42672 -10.13984 -9.84251 -9.61227 -9.53092 -8.53662 -8.46568 -8.33705 -7.43335 -6.36613 -4.05482 1.32806 1.42711 3.21021 3.42261 3.45535 3.58306 3.61161 3.93478 4.52465 4.54474 4.68879 4.86170 5.00995 5.04631 5.10463 5.22102 5.36461 5.38917 5.41790 5.48542 5.53604 5.60228 5.63082 5.69098 5.79806 5.86742 5.95722 6.09040 6.14059 6.25881 6.32042 6.44020 6.57371 6.69673 6.78337 6.89418 6.99214 7.09456 7.11497 7.33076 7.46903 7.50559 8.20387 8.45585 8.87764 9.66144 11.03811 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.029189 B = 0.003890 C = 0.003573 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 959.024047 B = 7195.843033 C = 7835.534570 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.092 4.092 3 C -0.123 4.123 4 C -0.124 4.124 5 C 0.052 3.948 6 C 0.085 3.915 7 C -0.126 4.126 8 O -0.319 6.319 9 C 0.060 3.940 10 C 0.012 3.988 11 N -0.483 5.483 12 C 0.060 3.940 13 C -0.078 4.078 14 H 0.060 0.940 15 C -0.125 4.125 16 C 0.015 3.985 17 C -0.595 4.595 18 H 0.050 0.950 19 C 0.013 3.987 20 N -0.914 5.914 21 Si 1.070 2.930 22 H -0.288 1.288 23 H -0.289 1.289 24 H -0.285 1.285 25 H 0.067 0.933 26 H 0.065 0.935 27 H 0.063 0.937 28 H 0.123 0.877 29 H 0.132 0.868 30 H 0.127 0.873 31 H 0.112 0.888 32 H 0.074 0.926 33 H 0.056 0.944 34 H 0.107 0.893 35 H 0.082 0.918 36 H 0.041 0.959 37 H 0.042 0.958 38 H 0.056 0.944 39 H 0.042 0.958 40 H 0.008 0.992 41 H 0.004 0.996 42 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.901 -10.802 7.009 19.694 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.093 4.093 3 C -0.142 4.142 4 C -0.145 4.145 5 C -0.047 4.047 6 C 0.037 3.963 7 C -0.145 4.145 8 O -0.233 6.233 9 C -0.016 4.016 10 C -0.115 4.115 11 N -0.197 5.197 12 C -0.064 4.064 13 C -0.097 4.097 14 H 0.078 0.922 15 C -0.182 4.182 16 C -0.022 4.022 17 C -0.633 4.633 18 H 0.068 0.932 19 C -0.190 4.190 20 N -0.551 5.551 21 Si 0.898 3.102 22 H -0.215 1.215 23 H -0.215 1.215 24 H -0.211 1.211 25 H 0.086 0.914 26 H 0.084 0.916 27 H 0.082 0.918 28 H 0.141 0.859 29 H 0.149 0.851 30 H 0.145 0.855 31 H 0.130 0.870 32 H 0.092 0.908 33 H 0.075 0.925 34 H 0.125 0.875 35 H 0.100 0.900 36 H 0.059 0.941 37 H 0.061 0.939 38 H 0.075 0.925 39 H 0.061 0.939 40 H 0.027 0.973 41 H 0.022 0.978 42 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -13.383 -10.169 6.817 18.138 hybrid contribution -1.254 -0.679 -0.004 1.426 sum -14.637 -10.847 6.813 19.451 Atomic orbital electron populations 1.20700 0.91007 1.02556 1.02079 1.19534 0.95827 0.92256 1.01669 1.20777 0.93515 0.97512 1.02415 1.20987 0.94129 0.96658 1.02699 1.19029 0.89105 0.93218 1.03366 1.18612 0.91665 0.83420 1.02559 1.20223 0.90477 0.98406 1.05383 1.86188 1.23795 1.27512 1.85802 1.23169 0.78910 0.99482 1.00033 1.22845 1.01639 0.88672 0.98331 1.58814 1.03050 1.05154 1.52693 1.22593 0.97916 0.91578 0.94332 1.21189 0.90342 1.00839 0.97357 0.92181 1.21605 1.01247 1.00034 0.95297 1.19247 0.96974 0.92603 0.93407 1.22017 0.91173 1.18559 1.31588 0.93165 1.25826 1.06920 0.92998 0.93260 1.70756 1.10414 1.35112 1.38812 0.83529 0.74455 0.75625 0.76550 1.21478 1.21526 1.21050 0.91405 0.91607 0.91768 0.85927 0.85072 0.85498 0.86959 0.90823 0.92528 0.87458 0.90012 0.94088 0.93863 0.92477 0.93851 0.97346 0.97758 0.92133 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.90 10.01 36.01 0.36 -0.53 16 2 C -0.09 -1.07 5.88 -104.64 -0.62 -1.69 16 3 C -0.12 -1.52 9.69 -39.64 -0.38 -1.91 16 4 C -0.12 -1.77 9.07 -39.31 -0.36 -2.13 16 5 C 0.05 0.80 5.82 -83.59 -0.49 0.31 16 6 C 0.08 1.25 6.47 -39.11 -0.25 1.00 16 7 C -0.13 -1.62 9.59 -39.40 -0.38 -2.00 16 8 O -0.32 -4.52 10.40 -20.24 -0.21 -4.73 16 9 C 0.06 0.71 7.26 37.38 0.27 0.98 16 10 C 0.01 0.17 5.13 -3.68 -0.02 0.15 16 11 N -0.48 -7.57 4.01 -170.82 -0.68 -8.25 16 12 C 0.06 1.05 3.88 -3.83 -0.01 1.03 16 13 C -0.08 -1.56 2.06 -90.62 -0.19 -1.75 16 14 H 0.06 1.20 6.29 -51.93 -0.33 0.87 16 15 C -0.12 -2.36 8.86 37.16 0.33 -2.03 16 16 C 0.02 0.38 3.76 -27.89 -0.10 0.27 16 17 C -0.60 -16.54 8.47 -34.44 -0.29 -16.83 16 18 H 0.05 1.37 7.06 -52.49 -0.37 1.00 16 19 C 0.01 0.39 5.46 -17.82 -0.10 0.29 16 20 N -0.91 -27.92 13.65 55.43 0.76 -27.16 16 21 Si 1.07 25.23 29.90 -169.99 -5.08 20.15 16 22 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 23 H -0.29 -6.46 7.11 56.52 0.40 -6.06 16 24 H -0.28 -6.71 7.11 56.52 0.40 -6.30 16 25 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 26 H 0.06 0.49 8.08 -51.93 -0.42 0.07 16 27 H 0.06 0.48 8.08 -51.93 -0.42 0.06 16 28 H 0.12 1.24 8.06 -52.49 -0.42 0.81 16 29 H 0.13 1.83 5.96 -52.49 -0.31 1.52 16 30 H 0.13 1.41 8.06 -52.49 -0.42 0.99 16 31 H 0.11 1.01 8.14 -51.93 -0.42 0.58 16 32 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 33 H 0.06 0.83 8.13 -51.93 -0.42 0.40 16 34 H 0.11 1.46 6.50 -51.93 -0.34 1.12 16 35 H 0.08 1.39 5.96 -51.93 -0.31 1.08 16 36 H 0.04 0.74 8.14 -51.93 -0.42 0.31 16 37 H 0.04 0.73 7.57 -51.93 -0.39 0.34 16 38 H 0.06 1.15 7.11 -51.93 -0.37 0.78 16 39 H 0.04 0.83 8.14 -51.93 -0.42 0.41 16 40 H 0.01 0.22 8.01 -51.93 -0.42 -0.20 16 41 H 0.00 0.11 8.00 -51.93 -0.42 -0.31 16 42 H 0.27 8.15 7.22 -40.82 -0.29 7.86 16 LS Contribution 331.50 15.07 5.00 5.00 Total: -1.00 -31.12 331.50 -9.02 -40.14 By element: Atomic # 1 Polarization: 6.27 SS G_CDS: -6.56 Total: -0.29 kcal Atomic # 6 Polarization: -22.62 SS G_CDS: -2.23 Total: -24.85 kcal Atomic # 7 Polarization: -35.48 SS G_CDS: 0.07 Total: -35.41 kcal Atomic # 8 Polarization: -4.52 SS G_CDS: -0.21 Total: -4.73 kcal Atomic # 14 Polarization: 25.23 SS G_CDS: -5.08 Total: 20.15 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -31.12 -9.02 -40.14 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787777526.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.367 kcal (2) G-P(sol) polarization free energy of solvation -31.124 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.757 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.016 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.141 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.774 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds