Wall clock time and date at job start Mon Mar 30 2020 01:43:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38249 * 119.98556 * 2 1 4 4 C 1.38070 * 120.11739 * 179.87330 * 3 2 1 5 5 C 1.39147 * 120.24021 * 0.07332 * 4 3 2 6 6 C 1.38964 * 119.53023 * 0.13332 * 5 4 3 7 7 C 1.38179 * 119.98251 * 180.02562 * 2 1 3 8 8 O 1.36158 * 121.37817 * 179.69871 * 6 5 4 9 9 C 1.43139 * 116.66254 * 14.91988 * 8 6 5 10 10 C 1.53429 * 107.88912 * 314.63748 * 9 8 6 11 11 N 1.39851 * 118.58948 * 180.19259 * 5 4 3 12 12 C 1.46899 * 110.99936 * 324.60815 * 11 5 4 13 13 C 1.52998 * 109.47161 * 176.05326 * 12 11 5 14 14 H 1.09003 * 109.47244 * 56.14974 * 13 12 11 15 15 C 1.53000 * 109.47071 * 296.15290 * 13 12 11 16 16 C 1.52998 * 109.47421 * 176.15651 * 13 12 11 17 17 C 1.50696 * 109.47256 * 185.00135 * 16 13 12 18 18 H 1.08001 * 120.00490 * 359.97438 * 17 16 13 19 19 C 1.37881 * 119.99984 * 180.02562 * 17 16 13 20 20 N 1.31510 * 120.00252 * 359.71521 * 19 17 16 21 21 Si 1.86803 * 120.00102 * 179.97438 * 19 17 16 22 22 H 1.48501 * 109.46644 * 269.72166 * 21 19 17 23 23 H 1.48497 * 109.47047 * 29.71904 * 21 19 17 24 24 H 1.48488 * 109.47419 * 149.72274 * 21 19 17 25 25 H 1.08999 * 109.46876 * 269.97667 * 1 2 3 26 26 H 1.08994 * 109.47166 * 29.97864 * 1 2 3 27 27 H 1.09000 * 109.46744 * 149.97703 * 1 2 3 28 28 H 1.07999 * 119.94479 * 359.89701 * 3 2 1 29 29 H 1.07999 * 119.88336 * 180.02562 * 4 3 2 30 30 H 1.07995 * 119.90316 * 0.02562 * 7 2 1 31 31 H 1.09005 * 109.77657 * 195.04009 * 9 8 6 32 32 H 1.08998 * 109.78172 * 74.23807 * 9 8 6 33 33 H 1.09000 * 109.61568 * 303.54209 * 10 9 8 34 34 H 1.09000 * 109.61187 * 183.01826 * 10 9 8 35 35 H 1.09003 * 109.47224 * 56.05587 * 12 11 5 36 36 H 1.08999 * 109.47142 * 296.04980 * 12 11 5 37 37 H 1.09000 * 109.47262 * 54.81401 * 15 13 12 38 38 H 1.09005 * 109.47419 * 174.81027 * 15 13 12 39 39 H 1.09000 * 109.47347 * 294.81488 * 15 13 12 40 40 H 1.08997 * 109.47272 * 64.99392 * 16 13 12 41 41 H 1.09002 * 109.46717 * 304.99547 * 16 13 12 42 42 H 0.97010 * 119.99929 * 0.28514 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1980 1.1974 0.0000 4 6 3.5786 1.2006 0.0026 5 6 4.2822 0.0001 0.0038 6 6 3.5853 -1.2022 -0.0006 7 6 2.1975 -1.1969 -0.0005 8 8 4.2355 -2.3984 -0.0058 9 6 5.6285 -2.3738 0.3228 10 6 6.2746 -1.2165 -0.4500 11 7 5.6800 0.0436 0.0106 12 6 6.1752 1.1789 -0.7792 13 6 7.6994 1.2515 -0.6679 14 1 8.1323 0.3019 -0.9828 15 6 8.0919 1.5343 0.7836 16 6 8.2236 2.3738 -1.5658 17 6 9.7305 2.3663 -1.5516 18 1 10.2613 1.6344 -0.9608 19 6 10.4316 3.2944 -2.2919 20 7 9.7853 4.1827 -3.0150 21 14 12.2995 3.2855 -2.2737 22 1 12.7879 4.1645 -1.1810 23 1 12.7857 1.9004 -2.0495 24 1 12.8096 3.7845 -3.5759 25 1 -0.3633 -0.0004 1.0277 26 1 -0.3633 0.8901 -0.5135 27 1 -0.3633 -0.8898 -0.5142 28 1 1.6568 2.1321 -0.0017 29 1 4.1146 2.1383 0.0030 30 1 1.6557 -2.1311 -0.0014 31 1 6.0927 -3.3162 0.0320 32 1 5.7520 -2.2163 1.3943 33 1 6.0892 -1.3403 -1.5169 34 1 7.3482 -1.2050 -0.2615 35 1 5.7389 2.1031 -0.4001 36 1 5.8932 1.0455 -1.8236 37 1 7.6411 0.7852 1.4345 38 1 9.1768 1.4947 0.8811 39 1 7.7373 2.5246 1.0695 40 1 7.8615 3.3334 -1.1969 41 1 7.8692 2.2192 -2.5849 42 1 8.8153 4.1876 -3.0242 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000787777526.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:43:31 Heat of formation + Delta-G solvation = -42.084646 kcal Electronic energy + Delta-G solvation = -21416.550266 eV Core-core repulsion = 18360.251570 eV Total energy + Delta-G solvation = -3056.298696 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.14930 -38.86238 -38.72787 -36.38086 -34.19661 -33.00032 -31.48759 -30.15626 -28.59791 -27.75322 -26.21715 -25.23706 -24.30881 -23.05695 -21.30631 -20.55376 -19.06448 -18.61882 -17.91961 -17.65876 -16.31009 -16.20307 -15.77219 -15.61654 -15.51472 -15.10819 -14.94153 -14.89987 -14.66580 -14.35649 -13.80428 -13.62456 -13.29914 -13.07692 -13.02931 -12.94099 -12.61834 -12.52066 -12.47317 -12.05537 -11.95106 -11.86984 -11.68530 -11.54175 -11.33949 -10.78263 -10.56950 -10.53921 -9.49959 -8.66844 -8.54889 -6.36398 0.29243 0.39528 1.51982 1.60961 1.78036 2.19138 2.51094 2.57601 2.84518 3.17485 3.48029 3.60853 3.84758 3.96085 4.03292 4.07212 4.21072 4.23419 4.24552 4.29446 4.42809 4.54446 4.58650 4.67378 4.69581 4.70809 4.79270 4.89070 4.93966 5.01781 5.11434 5.18051 5.24189 5.25344 5.28069 5.38390 5.55840 5.62808 5.71663 5.86432 5.97630 6.03841 6.20594 6.41041 6.59627 7.44665 8.73898 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.029189 B = 0.003890 C = 0.003573 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 959.024047 B = 7195.843033 C = 7835.534570 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.085 4.085 3 C -0.127 4.127 4 C -0.138 4.138 5 C 0.024 3.976 6 C 0.071 3.929 7 C -0.134 4.134 8 O -0.327 6.327 9 C 0.063 3.937 10 C 0.008 3.992 11 N -0.484 5.484 12 C 0.075 3.925 13 C -0.068 4.068 14 H 0.061 0.939 15 C -0.114 4.114 16 C 0.018 3.982 17 C -0.604 4.604 18 H 0.054 0.946 19 C -0.042 4.042 20 N -0.942 5.942 21 Si 1.118 2.882 22 H -0.273 1.273 23 H -0.268 1.268 24 H -0.285 1.285 25 H 0.081 0.919 26 H 0.077 0.923 27 H 0.075 0.925 28 H 0.146 0.854 29 H 0.126 0.874 30 H 0.145 0.855 31 H 0.145 0.855 32 H 0.078 0.922 33 H 0.045 0.955 34 H 0.110 0.890 35 H 0.081 0.919 36 H 0.026 0.974 37 H 0.066 0.934 38 H 0.043 0.957 39 H 0.036 0.964 40 H -0.011 1.011 41 H -0.019 1.019 42 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.687 -12.173 8.113 21.449 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.086 4.086 3 C -0.146 4.146 4 C -0.158 4.158 5 C -0.074 4.074 6 C 0.024 3.976 7 C -0.153 4.153 8 O -0.242 6.242 9 C -0.012 4.012 10 C -0.118 4.118 11 N -0.199 5.199 12 C -0.051 4.051 13 C -0.087 4.087 14 H 0.080 0.920 15 C -0.171 4.171 16 C -0.019 4.019 17 C -0.642 4.642 18 H 0.073 0.927 19 C -0.239 4.239 20 N -0.580 5.580 21 Si 0.939 3.061 22 H -0.199 1.199 23 H -0.192 1.192 24 H -0.211 1.211 25 H 0.100 0.900 26 H 0.096 0.904 27 H 0.094 0.906 28 H 0.163 0.837 29 H 0.144 0.856 30 H 0.162 0.838 31 H 0.162 0.838 32 H 0.096 0.904 33 H 0.063 0.937 34 H 0.128 0.872 35 H 0.099 0.901 36 H 0.045 0.955 37 H 0.085 0.915 38 H 0.063 0.937 39 H 0.055 0.945 40 H 0.007 0.993 41 H 0.000 1.000 42 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -14.202 -11.560 7.941 19.960 hybrid contribution -1.139 -0.270 -0.351 1.222 sum -15.341 -11.830 7.590 20.806 Atomic orbital electron populations 1.20783 0.88296 1.03795 1.03324 1.19976 0.97744 0.91497 0.99369 1.21094 0.92865 0.98983 1.01656 1.21126 0.95235 0.96239 1.03241 1.19168 0.88826 0.94057 1.05370 1.18887 0.92528 0.83316 1.02918 1.20566 0.89973 0.99719 1.04997 1.86169 1.24733 1.27355 1.85938 1.23352 0.77911 0.99966 0.99976 1.22927 1.01912 0.88939 0.98069 1.58829 1.03789 1.05008 1.52269 1.22267 0.95965 0.92851 0.93972 1.20986 0.92105 0.98694 0.96889 0.92047 1.21494 1.00412 1.00424 0.94796 1.19165 0.95979 0.93607 0.93185 1.22416 0.92632 1.18196 1.30938 0.92730 1.27386 1.11404 0.92481 0.92599 1.70893 1.09661 1.36717 1.40689 0.82924 0.69189 0.77052 0.76905 1.19887 1.19230 1.21105 0.89995 0.90388 0.90597 0.83673 0.85606 0.83771 0.83785 0.90375 0.93712 0.87223 0.90059 0.95527 0.91521 0.93748 0.94492 0.99288 1.00031 0.93647 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.42 10.01 71.24 0.71 -0.71 16 2 C -0.08 -1.80 5.88 -19.88 -0.12 -1.91 16 3 C -0.13 -2.95 9.69 22.23 0.22 -2.74 16 4 C -0.14 -3.91 9.07 22.45 0.20 -3.70 16 5 C 0.02 0.73 5.82 38.25 0.22 0.95 16 6 C 0.07 2.02 6.47 22.57 0.15 2.16 16 7 C -0.13 -3.21 9.59 22.39 0.21 -2.99 16 8 O -0.33 -8.86 10.40 -95.35 -0.99 -9.86 16 9 C 0.06 1.40 7.26 72.13 0.52 1.92 16 10 C 0.01 0.22 5.13 86.48 0.44 0.66 16 11 N -0.48 -15.13 4.01 -694.35 -2.78 -17.91 16 12 C 0.07 2.66 3.88 86.30 0.33 3.00 16 13 C -0.07 -2.74 2.06 -10.80 -0.02 -2.77 16 14 H 0.06 2.46 6.29 -2.39 -0.02 2.45 16 15 C -0.11 -4.29 8.86 71.98 0.64 -3.65 16 16 C 0.02 0.94 3.76 29.85 0.11 1.05 16 17 C -0.60 -34.01 8.47 25.60 0.22 -33.79 16 18 H 0.05 2.97 7.06 -2.91 -0.02 2.95 16 19 C -0.04 -2.42 5.46 84.66 0.46 -1.96 16 20 N -0.94 -58.87 13.65 21.45 0.29 -58.58 16 21 Si 1.12 50.37 29.90 68.60 2.05 52.42 16 22 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 23 H -0.27 -11.03 7.11 99.48 0.71 -10.32 16 24 H -0.29 -12.82 7.11 99.48 0.71 -12.11 16 25 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 26 H 0.08 0.89 8.08 -2.39 -0.02 0.87 16 27 H 0.08 0.88 8.08 -2.39 -0.02 0.86 16 28 H 0.15 2.61 8.06 -2.91 -0.02 2.59 16 29 H 0.13 3.59 5.96 -2.91 -0.02 3.57 16 30 H 0.14 2.87 8.06 -2.91 -0.02 2.85 16 31 H 0.14 2.23 8.14 -2.38 -0.02 2.21 16 32 H 0.08 1.68 8.14 -2.39 -0.02 1.66 16 33 H 0.04 1.32 8.13 -2.39 -0.02 1.30 16 34 H 0.11 2.89 6.50 -2.39 -0.02 2.88 16 35 H 0.08 2.86 5.96 -2.39 -0.01 2.85 16 36 H 0.03 1.00 8.14 -2.39 -0.02 0.98 16 37 H 0.07 2.19 7.57 -2.39 -0.02 2.17 16 38 H 0.04 1.76 7.11 -2.38 -0.02 1.74 16 39 H 0.04 1.41 8.14 -2.39 -0.02 1.39 16 40 H -0.01 -0.62 8.01 -2.39 -0.02 -0.64 16 41 H -0.02 -1.04 8.00 -2.39 -0.02 -1.06 16 42 H 0.25 16.12 7.22 -92.70 -0.67 15.45 16 Total: -1.00 -67.74 331.50 3.97 -63.77 By element: Atomic # 1 Polarization: 13.54 SS G_CDS: 1.09 Total: 14.64 kcal Atomic # 6 Polarization: -48.79 SS G_CDS: 4.31 Total: -44.48 kcal Atomic # 7 Polarization: -74.00 SS G_CDS: -2.49 Total: -76.49 kcal Atomic # 8 Polarization: -8.86 SS G_CDS: -0.99 Total: -9.86 kcal Atomic # 14 Polarization: 50.37 SS G_CDS: 2.05 Total: 52.42 kcal Total: -67.74 3.97 -63.77 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787777526.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.684 kcal (2) G-P(sol) polarization free energy of solvation -67.736 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.053 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.968 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.768 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.085 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds