Wall clock time and date at job start Mon Mar 30 2020 01:43:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38258 * 119.98107 * 2 1 4 4 C 1.38064 * 120.10810 * 180.31280 * 3 2 1 5 5 C 1.39139 * 120.24232 * 359.51301 * 4 3 2 6 6 C 1.38962 * 119.53764 * 0.32157 * 5 4 3 7 7 C 1.38174 * 119.98532 * 179.97438 * 2 1 3 8 8 O 1.36147 * 121.37023 * 180.32203 * 6 5 4 9 9 C 1.43145 * 116.68866 * 344.95980 * 8 6 5 10 10 C 1.53431 * 107.90694 * 45.31871 * 9 8 6 11 11 N 1.39855 * 118.58905 * 179.97438 * 5 4 3 12 12 C 1.46901 * 111.00127 * 35.39520 * 11 5 4 13 13 C 1.52999 * 109.47296 * 175.76423 * 12 11 5 14 14 H 1.09001 * 109.47544 * 303.78857 * 13 12 11 15 15 C 1.53009 * 109.46888 * 63.78772 * 13 12 11 16 16 C 1.53002 * 109.47113 * 183.78493 * 13 12 11 17 17 C 1.50703 * 109.46983 * 175.00207 * 16 13 12 18 18 H 1.08008 * 119.99990 * 0.02562 * 17 16 13 19 19 C 1.37871 * 120.00146 * 180.02562 * 17 16 13 20 20 N 1.31522 * 119.99909 * 359.97438 * 19 17 16 21 21 Si 1.86798 * 120.00191 * 180.02562 * 19 17 16 22 22 H 1.48498 * 109.47105 * 90.00030 * 21 19 17 23 23 H 1.48503 * 109.47110 * 209.99778 * 21 19 17 24 24 H 1.48500 * 109.47282 * 329.99530 * 21 19 17 25 25 H 1.09004 * 109.47104 * 90.00117 * 1 2 3 26 26 H 1.09006 * 109.47123 * 209.99400 * 1 2 3 27 27 H 1.09000 * 109.47408 * 329.99580 * 1 2 3 28 28 H 1.07993 * 119.94720 * 0.04095 * 3 2 1 29 29 H 1.08009 * 119.87580 * 179.73935 * 4 3 2 30 30 H 1.07998 * 119.89929 * 0.02562 * 7 2 1 31 31 H 1.09003 * 109.77494 * 285.72000 * 9 8 6 32 32 H 1.08994 * 109.77451 * 164.91845 * 9 8 6 33 33 H 1.09005 * 109.61220 * 177.03999 * 10 9 8 34 34 H 1.08992 * 109.61967 * 56.50339 * 10 9 8 35 35 H 1.08995 * 109.47237 * 295.76562 * 12 11 5 36 36 H 1.09005 * 109.47120 * 55.77046 * 12 11 5 37 37 H 1.08995 * 109.46713 * 185.32127 * 15 13 12 38 38 H 1.09000 * 109.46586 * 305.31613 * 15 13 12 39 39 H 1.08995 * 109.46886 * 65.32085 * 15 13 12 40 40 H 1.08997 * 109.47302 * 295.00110 * 16 13 12 41 41 H 1.08997 * 109.46875 * 55.00522 * 16 13 12 42 42 H 0.96997 * 119.99709 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1979 1.1976 0.0000 4 6 3.5785 1.2006 -0.0065 5 6 4.2820 0.0002 -0.0029 6 6 3.5853 -1.2021 0.0005 7 6 2.1976 -1.1968 0.0005 8 8 4.2357 -2.3981 0.0107 9 6 5.6295 -2.3747 -0.3144 10 6 6.2741 -1.2148 0.4557 11 7 5.6799 0.0437 -0.0103 12 6 6.1753 1.1822 0.7747 13 6 7.7036 1.1362 0.8313 14 1 8.0235 0.1771 1.2387 15 6 8.2714 1.3059 -0.5794 16 6 8.2151 2.2667 1.7264 17 6 9.7094 2.1479 1.8811 18 1 10.2412 1.3464 1.3898 19 6 10.3978 3.0623 2.6499 20 7 9.7503 4.0385 3.2478 21 14 12.2501 2.9154 2.8412 22 1 12.9216 3.6877 1.7652 23 1 12.6554 3.4545 4.1642 24 1 12.6459 1.4872 2.7463 25 1 -0.3633 0.0000 -1.0277 26 1 -0.3634 -0.8901 0.5138 27 1 -0.3634 0.8899 0.5139 28 1 1.6568 2.1322 0.0007 29 1 4.1144 2.1384 -0.0108 30 1 1.6557 -2.1310 0.0005 31 1 5.7558 -2.2211 -1.3861 32 1 6.0929 -3.3160 -0.0190 33 1 7.3480 -1.2036 0.2689 34 1 6.0869 -1.3349 1.5226 35 1 5.8570 2.1130 0.3056 36 1 5.7727 1.1288 1.7863 37 1 9.3536 1.1790 -0.5530 38 1 7.8338 0.5572 -1.2397 39 1 8.0313 2.3024 -0.9502 40 1 7.9721 3.2276 1.2727 41 1 7.7417 2.1972 2.7057 42 1 10.2345 4.6816 3.7889 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000787777530.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:43:35 Heat of formation + Delta-G solvation = -21.224135 kcal Electronic energy + Delta-G solvation = -21393.337058 eV Core-core repulsion = 18337.942942 eV Total energy + Delta-G solvation = -3055.394116 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.01284 -37.74907 -37.41816 -34.44949 -32.32494 -31.81960 -30.41223 -29.02149 -27.18415 -26.38091 -24.96149 -23.86384 -22.79647 -21.71626 -20.03901 -18.90200 -17.52816 -16.94031 -16.57048 -16.27635 -15.06500 -14.74361 -14.61417 -14.29927 -14.08311 -14.00848 -13.80727 -13.50245 -13.38101 -12.71168 -12.33687 -12.27942 -12.19126 -11.74266 -11.55509 -11.45900 -11.36668 -10.90385 -10.89219 -10.83625 -10.57972 -10.40409 -10.31897 -9.76788 -9.52024 -9.27665 -9.02636 -8.41478 -8.38051 -7.37311 -6.02708 -4.04553 1.38367 1.48189 3.26613 3.29637 3.36289 3.38785 3.64351 4.00444 4.43468 4.60842 4.75616 4.91183 5.06107 5.10907 5.15658 5.27406 5.33198 5.43812 5.47945 5.52143 5.58668 5.68391 5.70054 5.76737 5.84692 5.94491 6.02607 6.17536 6.21240 6.32262 6.39782 6.50822 6.62450 6.75744 6.87585 6.97872 7.06225 7.18085 7.20382 7.53606 7.61198 7.75273 7.96021 8.38849 9.01261 9.59296 11.08746 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.028956 B = 0.003894 C = 0.003576 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 966.762988 B = 7188.765029 C = 7827.998528 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.092 4.092 3 C -0.124 4.124 4 C -0.123 4.123 5 C 0.052 3.948 6 C 0.085 3.915 7 C -0.126 4.126 8 O -0.319 6.319 9 C 0.059 3.941 10 C 0.011 3.989 11 N -0.484 5.484 12 C 0.063 3.937 13 C -0.089 4.089 14 H 0.060 0.940 15 C -0.126 4.126 16 C 0.029 3.971 17 C -0.515 4.515 18 H 0.056 0.944 19 C 0.056 3.944 20 N -0.895 5.895 21 Si 0.890 3.110 22 H -0.281 1.281 23 H -0.287 1.287 24 H -0.274 1.274 25 H 0.067 0.933 26 H 0.063 0.937 27 H 0.065 0.935 28 H 0.122 0.878 29 H 0.131 0.869 30 H 0.126 0.874 31 H 0.073 0.927 32 H 0.112 0.888 33 H 0.109 0.891 34 H 0.057 0.943 35 H 0.081 0.919 36 H 0.043 0.957 37 H 0.055 0.945 38 H 0.040 0.960 39 H 0.045 0.955 40 H 0.018 0.982 41 H 0.014 0.986 42 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.658 -9.902 -7.316 19.142 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.094 4.094 3 C -0.143 4.143 4 C -0.143 4.143 5 C -0.047 4.047 6 C 0.037 3.963 7 C -0.146 4.146 8 O -0.233 6.233 9 C -0.017 4.017 10 C -0.115 4.115 11 N -0.198 5.198 12 C -0.062 4.062 13 C -0.108 4.108 14 H 0.078 0.922 15 C -0.184 4.184 16 C -0.009 4.009 17 C -0.553 4.553 18 H 0.074 0.926 19 C -0.145 4.145 20 N -0.535 5.535 21 Si 0.718 3.282 22 H -0.207 1.207 23 H -0.213 1.213 24 H -0.199 1.199 25 H 0.085 0.915 26 H 0.082 0.918 27 H 0.084 0.916 28 H 0.140 0.860 29 H 0.149 0.851 30 H 0.144 0.856 31 H 0.091 0.909 32 H 0.130 0.870 33 H 0.127 0.873 34 H 0.075 0.925 35 H 0.099 0.901 36 H 0.061 0.939 37 H 0.074 0.926 38 H 0.059 0.941 39 H 0.064 0.936 40 H 0.036 0.964 41 H 0.032 0.968 42 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -14.451 -9.876 -7.620 19.090 hybrid contribution 1.153 0.140 0.817 1.420 sum -13.298 -9.736 -6.803 17.830 Atomic orbital electron populations 1.20699 0.91069 1.02526 1.02029 1.19524 0.95783 0.92278 1.01776 1.20772 0.93549 0.97470 1.02469 1.20966 0.94105 0.96678 1.02583 1.19041 0.89169 0.93182 1.03288 1.18606 0.91651 0.83450 1.02555 1.20209 0.90495 0.98370 1.05485 1.86181 1.23750 1.27584 1.85836 1.23182 0.78893 0.99536 1.00051 1.22862 1.01713 0.88613 0.98330 1.58856 1.02985 1.05208 1.52769 1.22555 0.97632 0.91439 0.94556 1.21392 0.90255 1.01542 0.97564 0.92213 1.21636 1.00763 1.00342 0.95620 1.19113 0.95852 0.92260 0.93642 1.21187 0.92523 1.11917 1.29678 0.92581 1.25016 0.98287 0.95426 0.95740 1.69964 1.35625 1.15375 1.32522 0.86620 0.85867 0.78261 0.77413 1.20676 1.21272 1.19917 0.91455 0.91806 0.91625 0.85961 0.85074 0.85567 0.90898 0.87032 0.87287 0.92463 0.90089 0.93916 0.92563 0.94074 0.93627 0.96387 0.96786 0.93014 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.91 10.01 36.01 0.36 -0.55 16 2 C -0.09 -1.10 5.88 -104.64 -0.62 -1.71 16 3 C -0.12 -1.54 9.69 -39.64 -0.38 -1.93 16 4 C -0.12 -1.76 9.07 -39.31 -0.36 -2.11 16 5 C 0.05 0.81 5.81 -83.59 -0.49 0.32 16 6 C 0.08 1.26 6.47 -39.12 -0.25 1.01 16 7 C -0.13 -1.65 9.59 -39.41 -0.38 -2.03 16 8 O -0.32 -4.58 10.40 -20.21 -0.21 -4.79 16 9 C 0.06 0.71 7.26 37.38 0.27 0.98 16 10 C 0.01 0.16 4.85 -3.68 -0.02 0.14 16 11 N -0.48 -7.58 4.07 -170.81 -0.69 -8.28 16 12 C 0.06 1.08 3.77 -3.82 -0.01 1.07 16 13 C -0.09 -1.74 1.85 -90.61 -0.17 -1.91 16 14 H 0.06 1.16 6.19 -51.93 -0.32 0.84 16 15 C -0.13 -2.34 8.72 37.16 0.32 -2.02 16 16 C 0.03 0.72 4.45 -27.88 -0.12 0.59 16 17 C -0.51 -14.08 8.47 -34.44 -0.29 -14.37 16 18 H 0.06 1.49 7.06 -52.48 -0.37 1.12 16 19 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 20 N -0.90 -26.57 13.29 55.43 0.74 -25.84 16 21 Si 0.89 21.39 29.54 -169.99 -5.02 16.37 16 22 H -0.28 -6.67 7.11 56.52 0.40 -6.26 16 23 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 24 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 25 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 26 H 0.06 0.49 8.09 -51.93 -0.42 0.07 16 27 H 0.06 0.50 8.09 -51.93 -0.42 0.08 16 28 H 0.12 1.25 8.06 -52.49 -0.42 0.82 16 29 H 0.13 1.83 6.13 -52.48 -0.32 1.51 16 30 H 0.13 1.43 8.06 -52.49 -0.42 1.00 16 31 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 32 H 0.11 1.02 8.14 -51.93 -0.42 0.59 16 33 H 0.11 1.48 6.24 -51.93 -0.32 1.16 16 34 H 0.06 0.85 8.13 -51.93 -0.42 0.42 16 35 H 0.08 1.38 6.42 -51.93 -0.33 1.05 16 36 H 0.04 0.77 8.12 -51.93 -0.42 0.35 16 37 H 0.06 1.10 7.11 -51.93 -0.37 0.73 16 38 H 0.04 0.68 7.46 -51.93 -0.39 0.29 16 39 H 0.04 0.86 8.14 -51.93 -0.42 0.43 16 40 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 41 H 0.01 0.37 8.14 -51.93 -0.42 -0.05 16 42 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 LS Contribution 332.28 15.07 5.01 5.01 Total: -1.00 -30.31 332.28 -9.04 -39.35 By element: Atomic # 1 Polarization: 5.82 SS G_CDS: -6.63 Total: -0.81 kcal Atomic # 6 Polarization: -18.79 SS G_CDS: -2.23 Total: -21.02 kcal Atomic # 7 Polarization: -34.16 SS G_CDS: 0.04 Total: -34.11 kcal Atomic # 8 Polarization: -4.58 SS G_CDS: -0.21 Total: -4.79 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.02 Total: 16.37 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -30.31 -9.04 -39.35 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787777530.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.124 kcal (2) G-P(sol) polarization free energy of solvation -30.307 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.184 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.040 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.348 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.224 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds