Wall clock time and date at job start Mon Mar 30 2020 01:43:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38258 * 119.98107 * 2 1 4 4 C 1.38064 * 120.10810 * 180.31280 * 3 2 1 5 5 C 1.39139 * 120.24232 * 359.51301 * 4 3 2 6 6 C 1.38962 * 119.53764 * 0.32157 * 5 4 3 7 7 C 1.38174 * 119.98532 * 179.97438 * 2 1 3 8 8 O 1.36147 * 121.37023 * 180.32203 * 6 5 4 9 9 C 1.43145 * 116.68866 * 344.95980 * 8 6 5 10 10 C 1.53431 * 107.90694 * 45.31871 * 9 8 6 11 11 N 1.39855 * 118.58905 * 179.97438 * 5 4 3 12 12 C 1.46901 * 111.00127 * 35.39520 * 11 5 4 13 13 C 1.52999 * 109.47296 * 175.76423 * 12 11 5 14 14 H 1.09001 * 109.47544 * 303.78857 * 13 12 11 15 15 C 1.53009 * 109.46888 * 63.78772 * 13 12 11 16 16 C 1.53002 * 109.47113 * 183.78493 * 13 12 11 17 17 C 1.50703 * 109.46983 * 175.00207 * 16 13 12 18 18 H 1.08008 * 119.99990 * 0.02562 * 17 16 13 19 19 C 1.37871 * 120.00146 * 180.02562 * 17 16 13 20 20 N 1.31522 * 119.99909 * 359.97438 * 19 17 16 21 21 Si 1.86798 * 120.00191 * 180.02562 * 19 17 16 22 22 H 1.48498 * 109.47105 * 90.00030 * 21 19 17 23 23 H 1.48503 * 109.47110 * 209.99778 * 21 19 17 24 24 H 1.48500 * 109.47282 * 329.99530 * 21 19 17 25 25 H 1.09004 * 109.47104 * 90.00117 * 1 2 3 26 26 H 1.09006 * 109.47123 * 209.99400 * 1 2 3 27 27 H 1.09000 * 109.47408 * 329.99580 * 1 2 3 28 28 H 1.07993 * 119.94720 * 0.04095 * 3 2 1 29 29 H 1.08009 * 119.87580 * 179.73935 * 4 3 2 30 30 H 1.07998 * 119.89929 * 0.02562 * 7 2 1 31 31 H 1.09003 * 109.77494 * 285.72000 * 9 8 6 32 32 H 1.08994 * 109.77451 * 164.91845 * 9 8 6 33 33 H 1.09005 * 109.61220 * 177.03999 * 10 9 8 34 34 H 1.08992 * 109.61967 * 56.50339 * 10 9 8 35 35 H 1.08995 * 109.47237 * 295.76562 * 12 11 5 36 36 H 1.09005 * 109.47120 * 55.77046 * 12 11 5 37 37 H 1.08995 * 109.46713 * 185.32127 * 15 13 12 38 38 H 1.09000 * 109.46586 * 305.31613 * 15 13 12 39 39 H 1.08995 * 109.46886 * 65.32085 * 15 13 12 40 40 H 1.08997 * 109.47302 * 295.00110 * 16 13 12 41 41 H 1.08997 * 109.46875 * 55.00522 * 16 13 12 42 42 H 0.96997 * 119.99709 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1979 1.1976 0.0000 4 6 3.5785 1.2006 -0.0065 5 6 4.2820 0.0002 -0.0029 6 6 3.5853 -1.2021 0.0005 7 6 2.1976 -1.1968 0.0005 8 8 4.2357 -2.3981 0.0107 9 6 5.6295 -2.3747 -0.3144 10 6 6.2741 -1.2148 0.4557 11 7 5.6799 0.0437 -0.0103 12 6 6.1753 1.1822 0.7747 13 6 7.7036 1.1362 0.8313 14 1 8.0235 0.1771 1.2387 15 6 8.2714 1.3059 -0.5794 16 6 8.2151 2.2667 1.7264 17 6 9.7094 2.1479 1.8811 18 1 10.2412 1.3464 1.3898 19 6 10.3978 3.0623 2.6499 20 7 9.7503 4.0385 3.2478 21 14 12.2501 2.9154 2.8412 22 1 12.9216 3.6877 1.7652 23 1 12.6554 3.4545 4.1642 24 1 12.6459 1.4872 2.7463 25 1 -0.3633 0.0000 -1.0277 26 1 -0.3634 -0.8901 0.5138 27 1 -0.3634 0.8899 0.5139 28 1 1.6568 2.1322 0.0007 29 1 4.1144 2.1384 -0.0108 30 1 1.6557 -2.1310 0.0005 31 1 5.7558 -2.2211 -1.3861 32 1 6.0929 -3.3160 -0.0190 33 1 7.3480 -1.2036 0.2689 34 1 6.0869 -1.3349 1.5226 35 1 5.8570 2.1130 0.3056 36 1 5.7727 1.1288 1.7863 37 1 9.3536 1.1790 -0.5530 38 1 7.8338 0.5572 -1.2397 39 1 8.0313 2.3024 -0.9502 40 1 7.9721 3.2276 1.2727 41 1 7.7417 2.1972 2.7057 42 1 10.2345 4.6816 3.7889 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000787777530.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:43:35 Heat of formation + Delta-G solvation = -37.888915 kcal Electronic energy + Delta-G solvation = -21394.059697 eV Core-core repulsion = 18337.942942 eV Total energy + Delta-G solvation = -3056.116755 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.10286 -38.82055 -38.66080 -36.09998 -34.12459 -32.94351 -31.44436 -30.17559 -28.96169 -27.64429 -26.22881 -25.21822 -24.21528 -22.95930 -21.22599 -20.33658 -18.68248 -18.53625 -17.87782 -17.59654 -16.54574 -16.18337 -16.09603 -15.54273 -15.23278 -15.03173 -14.85275 -14.73555 -14.45524 -14.23656 -14.04296 -13.49272 -13.21735 -13.06159 -12.96217 -12.75239 -12.65519 -12.53296 -12.45317 -12.26495 -12.05629 -11.84278 -11.60790 -11.46386 -11.13189 -11.03052 -10.63538 -10.54848 -9.45714 -8.49922 -8.18855 -6.28350 0.33852 0.43909 1.40268 1.40889 1.51609 2.24181 2.40826 2.58052 2.90383 3.15044 3.55480 3.67643 3.93045 4.02478 4.07630 4.14847 4.27070 4.30703 4.31820 4.38774 4.47487 4.61728 4.66398 4.74608 4.78570 4.80178 4.89428 4.91794 4.99824 5.13131 5.21800 5.24001 5.28446 5.38254 5.44238 5.49746 5.66578 5.74135 5.76946 5.84420 5.92891 6.04298 6.26321 6.45787 6.87219 7.40288 8.93235 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.028956 B = 0.003894 C = 0.003576 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 966.762988 B = 7188.765029 C = 7827.998528 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C -0.086 4.086 3 C -0.128 4.128 4 C -0.136 4.136 5 C 0.024 3.976 6 C 0.070 3.930 7 C -0.135 4.135 8 O -0.328 6.328 9 C 0.062 3.938 10 C 0.008 3.992 11 N -0.484 5.484 12 C 0.077 3.923 13 C -0.077 4.077 14 H 0.063 0.937 15 C -0.116 4.116 16 C 0.035 3.965 17 C -0.528 4.528 18 H 0.064 0.936 19 C -0.002 4.002 20 N -0.935 5.935 21 Si 0.961 3.039 22 H -0.273 1.273 23 H -0.285 1.285 24 H -0.262 1.262 25 H 0.081 0.919 26 H 0.075 0.925 27 H 0.077 0.923 28 H 0.145 0.855 29 H 0.126 0.874 30 H 0.144 0.856 31 H 0.078 0.922 32 H 0.144 0.856 33 H 0.113 0.887 34 H 0.044 0.956 35 H 0.079 0.921 36 H 0.026 0.974 37 H 0.045 0.955 38 H 0.065 0.935 39 H 0.037 0.963 40 H -0.008 1.008 41 H -0.015 1.015 42 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.274 -11.337 -8.268 20.741 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.087 4.087 3 C -0.147 4.147 4 C -0.157 4.157 5 C -0.074 4.074 6 C 0.023 3.977 7 C -0.154 4.154 8 O -0.243 6.243 9 C -0.013 4.013 10 C -0.119 4.119 11 N -0.199 5.199 12 C -0.048 4.048 13 C -0.096 4.096 14 H 0.082 0.918 15 C -0.173 4.173 16 C -0.003 4.003 17 C -0.566 4.566 18 H 0.082 0.918 19 C -0.199 4.199 20 N -0.576 5.576 21 Si 0.786 3.214 22 H -0.199 1.199 23 H -0.211 1.211 24 H -0.186 1.186 25 H 0.100 0.900 26 H 0.093 0.907 27 H 0.096 0.904 28 H 0.163 0.837 29 H 0.144 0.856 30 H 0.161 0.839 31 H 0.096 0.904 32 H 0.161 0.839 33 H 0.131 0.869 34 H 0.062 0.938 35 H 0.097 0.903 36 H 0.045 0.955 37 H 0.065 0.935 38 H 0.084 0.916 39 H 0.056 0.944 40 H 0.011 0.989 41 H 0.003 0.997 42 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -15.083 -11.330 -8.588 20.727 hybrid contribution 1.223 0.589 1.123 1.762 sum -13.859 -10.741 -7.465 19.057 Atomic orbital electron populations 1.20779 0.88356 1.03750 1.03286 1.19967 0.97706 0.91523 0.99493 1.21091 0.92911 0.98936 1.01727 1.21112 0.95210 0.96283 1.03098 1.19186 0.88946 0.94006 1.05255 1.18879 0.92511 0.83355 1.02921 1.20550 0.90007 0.99674 1.05128 1.86161 1.24721 1.27425 1.85977 1.23368 0.77869 1.00011 1.00056 1.22943 1.02061 0.88886 0.97981 1.58881 1.03676 1.05046 1.52315 1.22234 0.95832 0.92630 0.94140 1.21168 0.91859 0.99354 0.97193 0.91825 1.21525 1.00076 1.00682 0.95030 1.18985 0.95131 0.93114 0.93069 1.21604 0.93719 1.11932 1.29379 0.91821 1.25946 1.03433 0.95069 0.95454 1.70104 1.37673 1.16353 1.33450 0.85507 0.79707 0.78832 0.77383 1.19908 1.21095 1.18615 0.90021 0.90654 0.90413 0.83711 0.85593 0.83862 0.90372 0.83878 0.86913 0.93777 0.90289 0.95524 0.93542 0.91637 0.94400 0.98931 0.99693 0.92939 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.46 10.01 71.24 0.71 -0.75 16 2 C -0.09 -1.85 5.88 -19.87 -0.12 -1.97 16 3 C -0.13 -3.02 9.69 22.23 0.22 -2.80 16 4 C -0.14 -3.91 9.07 22.45 0.20 -3.71 16 5 C 0.02 0.75 5.81 38.25 0.22 0.97 16 6 C 0.07 2.04 6.47 22.57 0.15 2.18 16 7 C -0.13 -3.29 9.59 22.38 0.21 -3.07 16 8 O -0.33 -9.00 10.40 -95.22 -0.99 -9.99 16 9 C 0.06 1.39 7.26 72.13 0.52 1.91 16 10 C 0.01 0.21 4.85 86.47 0.42 0.63 16 11 N -0.48 -15.18 4.07 -694.32 -2.82 -18.00 16 12 C 0.08 2.75 3.77 86.30 0.33 3.07 16 13 C -0.08 -3.08 1.85 -10.79 -0.02 -3.10 16 14 H 0.06 2.49 6.19 -2.39 -0.01 2.48 16 15 C -0.12 -4.26 8.72 71.99 0.63 -3.63 16 16 C 0.03 1.79 4.45 29.85 0.13 1.93 16 17 C -0.53 -29.32 8.47 25.60 0.22 -29.11 16 18 H 0.06 3.37 7.06 -2.91 -0.02 3.34 16 19 C 0.00 -0.09 5.46 84.65 0.46 0.37 16 20 N -0.94 -56.84 13.29 21.45 0.28 -56.55 16 21 Si 0.96 43.96 29.54 68.60 2.03 45.99 16 22 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 23 H -0.29 -12.89 7.11 99.48 0.71 -12.18 16 24 H -0.26 -11.38 7.11 99.48 0.71 -10.67 16 25 H 0.08 0.95 8.14 -2.38 -0.02 0.93 16 26 H 0.07 0.90 8.09 -2.38 -0.02 0.88 16 27 H 0.08 0.92 8.09 -2.39 -0.02 0.90 16 28 H 0.15 2.66 8.06 -2.91 -0.02 2.64 16 29 H 0.13 3.62 6.13 -2.91 -0.02 3.61 16 30 H 0.14 2.92 8.06 -2.91 -0.02 2.89 16 31 H 0.08 1.68 8.14 -2.39 -0.02 1.67 16 32 H 0.14 2.25 8.14 -2.39 -0.02 2.23 16 33 H 0.11 2.96 6.24 -2.38 -0.01 2.94 16 34 H 0.04 1.31 8.13 -2.39 -0.02 1.29 16 35 H 0.08 2.81 6.42 -2.39 -0.02 2.80 16 36 H 0.03 1.01 8.12 -2.38 -0.02 1.00 16 37 H 0.05 1.78 7.11 -2.39 -0.02 1.76 16 38 H 0.06 2.08 7.46 -2.39 -0.02 2.06 16 39 H 0.04 1.42 8.14 -2.39 -0.02 1.40 16 40 H -0.01 -0.43 8.14 -2.39 -0.02 -0.45 16 41 H -0.02 -0.87 8.14 -2.39 -0.02 -0.89 16 42 H 0.26 15.01 8.31 -92.71 -0.77 14.24 16 Total: -1.00 -65.96 332.28 3.77 -62.19 By element: Atomic # 1 Polarization: 12.43 SS G_CDS: 0.99 Total: 13.42 kcal Atomic # 6 Polarization: -41.35 SS G_CDS: 4.29 Total: -37.06 kcal Atomic # 7 Polarization: -72.01 SS G_CDS: -2.54 Total: -74.55 kcal Atomic # 8 Polarization: -9.00 SS G_CDS: -0.99 Total: -9.99 kcal Atomic # 14 Polarization: 43.96 SS G_CDS: 2.03 Total: 45.99 kcal Total: -65.96 3.77 -62.19 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787777530.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.300 kcal (2) G-P(sol) polarization free energy of solvation -65.963 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.663 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.775 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.189 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.889 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds