Wall clock time and date at job start Mon Mar 30 2020 02:44:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50698 * 119.99990 * 2 1 4 4 N 1.46900 * 109.47021 * 124.16208 * 3 2 1 5 5 C 1.46907 * 111.00018 * 301.54325 * 4 3 2 6 6 C 1.50701 * 109.46854 * 288.93781 * 5 4 3 7 7 H 1.08001 * 120.00263 * 354.87137 * 6 5 4 8 8 C 1.37873 * 120.00159 * 174.86319 * 6 5 4 9 9 N 1.31521 * 119.99921 * 0.02562 * 8 6 5 10 10 Si 1.86798 * 120.00488 * 179.97438 * 8 6 5 11 11 H 1.48494 * 109.46980 * 90.00134 * 10 8 6 12 12 H 1.48492 * 109.47579 * 210.00687 * 10 8 6 13 13 H 1.48506 * 109.46914 * 330.00911 * 10 8 6 14 14 C 1.46896 * 111.00035 * 65.49457 * 4 3 2 15 15 C 1.50695 * 109.47056 * 66.04779 * 14 4 3 16 16 C 1.38170 * 120.02984 * 259.72014 * 15 14 4 17 17 C 1.38241 * 120.06070 * 179.79182 * 16 15 14 18 18 C 1.50697 * 119.94849 * 180.25482 * 17 16 15 19 19 C 1.38295 * 120.10736 * 0.46562 * 17 16 15 20 20 C 1.38122 * 120.05587 * 359.78945 * 19 17 16 21 21 C 1.50702 * 120.02814 * 179.97438 * 20 19 17 22 22 C 1.38713 * 120.02875 * 80.00009 * 15 14 4 23 23 O 1.35889 * 120.05592 * 359.95597 * 22 15 14 24 24 H 1.08005 * 119.99879 * 179.97438 * 1 2 3 25 25 H 1.08000 * 120.00014 * 359.97438 * 1 2 3 26 26 H 1.08005 * 119.99561 * 180.02562 * 2 1 3 27 27 H 1.09003 * 109.46949 * 4.16222 * 3 2 1 28 28 H 1.08993 * 109.46933 * 244.15954 * 3 2 1 29 29 H 1.08996 * 109.47036 * 48.93568 * 5 4 3 30 30 H 1.08995 * 109.47381 * 168.94063 * 5 4 3 31 31 H 0.96998 * 119.99890 * 179.97438 * 9 8 6 32 32 H 1.09002 * 109.47596 * 306.04623 * 14 4 3 33 33 H 1.09006 * 109.47136 * 186.04892 * 14 4 3 34 34 H 1.08005 * 119.96466 * 0.02816 * 16 15 14 35 35 H 1.08994 * 109.47229 * 270.21324 * 18 17 16 36 36 H 1.09006 * 109.46846 * 30.20947 * 18 17 16 37 37 H 1.09001 * 109.46916 * 150.20757 * 18 17 16 38 38 H 1.08000 * 119.96583 * 179.76947 * 19 17 16 39 39 H 1.09000 * 109.47021 * 270.02610 * 21 20 19 40 40 H 1.09006 * 109.46451 * 30.02574 * 21 20 19 41 41 H 1.08998 * 109.47229 * 150.02045 * 21 20 19 42 42 H 0.96696 * 114.00398 * 90.00061 * 23 22 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9819 1.3403 1.1460 5 6 2.2515 1.1835 2.4110 6 6 1.4554 2.4324 2.6894 7 1 1.5525 3.2905 2.0409 8 6 0.6031 2.4796 3.7721 9 7 0.4851 1.4348 4.5622 10 14 -0.3832 4.0279 4.1178 11 1 -1.6865 3.9528 3.4102 12 1 -0.6193 4.1486 5.5788 13 1 0.3724 5.2133 3.6388 14 6 4.0292 0.3189 1.0129 15 6 4.9104 0.6534 -0.1630 16 6 4.7296 0.0042 -1.3693 17 6 5.5347 0.3136 -2.4496 18 6 5.3316 -0.3918 -3.7657 19 6 6.5292 1.2663 -2.3233 20 6 6.7174 1.9143 -1.1181 21 6 7.8016 2.9520 -0.9811 22 6 5.9074 1.6090 -0.0336 23 8 6.0904 2.2454 1.1530 24 1 -0.5400 -0.9354 -0.0004 25 1 -0.5400 0.9353 0.0004 26 1 1.8500 -0.9354 -0.0004 27 1 1.3575 2.1322 0.0746 28 1 2.6330 1.3957 -0.9249 29 1 1.5762 0.3311 2.3373 30 1 2.9605 1.0163 3.2217 31 1 -0.1143 1.4681 5.3241 32 1 3.5681 -0.6562 0.8556 33 1 4.6303 0.2942 1.9219 34 1 3.9560 -0.7428 -1.4692 35 1 5.9453 -1.2921 -3.7939 36 1 4.2816 -0.6644 -3.8735 37 1 5.6206 0.2708 -4.5814 38 1 7.1593 1.5036 -3.1677 39 1 8.7257 2.4716 -0.6592 40 1 7.9614 3.4396 -1.9428 41 1 7.5020 3.6952 -0.2422 42 1 6.7128 1.8018 1.7454 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000793561642.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:44:44 Heat of formation + Delta-G solvation = -2.470897 kcal Electronic energy + Delta-G solvation = -21568.137839 eV Core-core repulsion = 18513.556924 eV Total energy + Delta-G solvation = -3054.580915 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -39.99327 -37.19408 -36.61552 -33.14420 -32.73532 -32.44764 -31.09597 -27.66321 -26.87426 -26.32950 -25.76538 -23.78103 -21.09031 -20.77229 -20.38520 -18.60691 -17.96099 -16.19895 -16.11198 -15.37732 -15.06707 -14.50750 -14.29368 -14.25983 -13.82273 -13.61665 -13.35663 -13.05541 -13.03127 -12.63560 -12.33238 -12.29448 -12.08912 -11.57205 -11.36295 -11.28926 -11.19312 -10.91198 -10.79163 -10.65222 -10.51164 -10.39523 -10.07882 -9.82648 -9.16807 -8.70093 -8.42485 -8.33549 -8.09763 -7.10875 -5.94181 -3.94008 1.44016 1.50272 2.95237 3.36370 3.42456 3.47946 3.74254 4.49849 4.53638 4.85475 4.90193 5.00023 5.28664 5.34389 5.36999 5.41363 5.54571 5.56993 5.58882 5.64671 5.69139 5.78118 5.83986 5.90281 6.01913 6.05185 6.20342 6.29791 6.37242 6.47807 6.56415 6.67982 6.73799 6.85305 7.05145 7.21462 7.33003 7.41286 7.50615 7.90646 8.03819 8.18240 8.28833 8.64271 9.13996 9.69315 11.16437 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.020061 B = 0.005135 C = 0.004441 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1395.429342 B = 5451.069976 C = 6303.113467 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.179 4.179 3 C 0.090 3.910 4 N -0.515 5.515 5 C 0.192 3.808 6 C -0.497 4.497 7 H 0.061 0.939 8 C 0.055 3.945 9 N -0.901 5.901 10 Si 0.894 3.106 11 H -0.282 1.282 12 H -0.288 1.288 13 H -0.273 1.273 14 C 0.096 3.904 15 C -0.082 4.082 16 C -0.107 4.107 17 C -0.099 4.099 18 C -0.110 4.110 19 C -0.116 4.116 20 C -0.115 4.115 21 C -0.109 4.109 22 C 0.123 3.877 23 O -0.477 6.477 24 H 0.084 0.916 25 H 0.097 0.903 26 H 0.093 0.907 27 H 0.081 0.919 28 H 0.061 0.939 29 H 0.005 0.995 30 H 0.022 0.978 31 H 0.259 0.741 32 H 0.032 0.968 33 H 0.074 0.926 34 H 0.120 0.880 35 H 0.066 0.934 36 H 0.065 0.935 37 H 0.062 0.938 38 H 0.118 0.882 39 H 0.064 0.936 40 H 0.062 0.938 41 H 0.074 0.926 42 H 0.380 0.620 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.975 -3.964 -13.561 18.521 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.199 4.199 3 C -0.038 4.038 4 N -0.237 5.237 5 C 0.067 3.933 6 C -0.535 4.535 7 H 0.079 0.921 8 C -0.145 4.145 9 N -0.541 5.541 10 Si 0.722 3.278 11 H -0.209 1.209 12 H -0.214 1.214 13 H -0.198 1.198 14 C -0.032 4.032 15 C -0.083 4.083 16 C -0.125 4.125 17 C -0.099 4.099 18 C -0.166 4.166 19 C -0.134 4.134 20 C -0.116 4.116 21 C -0.165 4.165 22 C 0.078 3.922 23 O -0.286 6.286 24 H 0.102 0.898 25 H 0.115 0.885 26 H 0.111 0.889 27 H 0.099 0.901 28 H 0.079 0.921 29 H 0.022 0.978 30 H 0.040 0.960 31 H 0.069 0.931 32 H 0.050 0.950 33 H 0.092 0.908 34 H 0.138 0.862 35 H 0.084 0.916 36 H 0.084 0.916 37 H 0.082 0.918 38 H 0.136 0.864 39 H 0.082 0.918 40 H 0.081 0.919 41 H 0.093 0.907 42 H 0.235 0.765 Dipole moment (debyes) X Y Z Total from point charges 11.719 -3.128 -13.580 18.209 hybrid contribution -0.767 -0.444 0.602 1.072 sum 10.952 -3.572 -12.978 17.353 Atomic orbital electron populations 1.23676 0.96035 1.01050 1.00912 1.23529 0.96676 0.99742 0.99929 1.21247 0.94582 0.94157 0.93838 1.62417 1.12491 1.44878 1.03897 1.19766 0.92210 0.96962 0.84339 1.21122 1.22477 0.99339 1.10599 0.92076 1.24944 0.97082 0.96262 0.96225 1.69962 1.38336 1.29327 1.16445 0.86564 0.80298 0.83758 0.77211 1.20865 1.21373 1.19807 1.20869 0.93553 0.93893 0.94932 1.20328 0.96646 0.95188 0.96136 1.20833 0.99451 1.00386 0.91869 1.19794 0.96498 0.97822 0.95753 1.20731 1.02227 0.99797 0.93883 1.20679 0.98669 0.97321 0.96738 1.20174 0.98090 0.99271 0.94026 1.20645 0.96017 0.97243 1.02639 1.18074 0.94766 0.92888 0.86508 1.84940 1.67098 1.50490 1.26050 0.89786 0.88516 0.88868 0.90055 0.92078 0.97769 0.96008 0.93137 0.95029 0.90761 0.86230 0.91577 0.91649 0.91850 0.86361 0.91778 0.91936 0.90749 0.76542 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.28 14.32 29.01 0.42 -2.86 16 2 C -0.18 -3.36 7.39 -36.03 -0.27 -3.62 16 3 C 0.09 1.82 5.44 -4.98 -0.03 1.79 16 4 N -0.51 -11.35 4.65 -238.97 -1.11 -12.46 16 5 C 0.19 5.05 4.57 -4.97 -0.02 5.02 16 6 C -0.50 -14.21 8.53 -34.44 -0.29 -14.50 16 7 H 0.06 1.77 7.61 -52.49 -0.40 1.37 16 8 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 9 N -0.90 -27.05 13.29 55.43 0.74 -26.32 16 10 Si 0.89 22.14 29.54 -169.99 -5.02 17.12 16 11 H -0.28 -6.89 7.11 56.52 0.40 -6.48 16 12 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 13 H -0.27 -6.72 7.11 56.52 0.40 -6.32 16 14 C 0.10 1.76 4.61 -4.98 -0.02 1.74 16 15 C -0.08 -1.33 4.59 -104.47 -0.48 -1.81 16 16 C -0.11 -1.52 8.25 -39.61 -0.33 -1.85 16 17 C -0.10 -1.24 5.88 -104.60 -0.62 -1.85 16 18 C -0.11 -1.04 10.01 36.00 0.36 -0.68 16 19 C -0.12 -1.43 9.35 -39.60 -0.37 -1.80 16 20 C -0.12 -1.56 5.89 -104.47 -0.62 -2.17 16 21 C -0.11 -1.19 9.79 36.01 0.35 -0.84 16 22 C 0.12 1.93 6.65 -39.21 -0.26 1.67 16 23 O -0.48 -7.57 11.78 -19.39 -0.23 -7.79 16 24 H 0.08 1.38 8.06 -52.48 -0.42 0.95 16 25 H 0.10 1.83 7.84 -52.49 -0.41 1.42 16 26 H 0.09 1.63 6.84 -52.48 -0.36 1.27 16 27 H 0.08 1.80 7.01 -51.93 -0.36 1.44 16 28 H 0.06 1.15 6.35 -51.93 -0.33 0.82 16 29 H 0.00 0.13 6.68 -51.93 -0.35 -0.22 16 30 H 0.02 0.61 7.83 -51.93 -0.41 0.21 16 31 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 32 H 0.03 0.57 6.27 -51.93 -0.33 0.24 16 33 H 0.07 1.37 7.58 -51.93 -0.39 0.98 16 34 H 0.12 1.60 8.03 -52.48 -0.42 1.18 16 35 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 36 H 0.06 0.60 8.09 -51.93 -0.42 0.18 16 37 H 0.06 0.53 8.08 -51.93 -0.42 0.11 16 38 H 0.12 1.18 8.06 -52.49 -0.42 0.76 16 39 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 40 H 0.06 0.60 8.09 -51.93 -0.42 0.18 16 41 H 0.07 0.89 7.53 -51.93 -0.39 0.50 16 42 H 0.38 4.22 9.06 45.56 0.41 4.63 16 LS Contribution 344.91 15.07 5.20 5.20 Total: -1.00 -32.10 344.91 -8.52 -40.62 By element: Atomic # 1 Polarization: 9.71 SS G_CDS: -5.82 Total: 3.89 kcal Atomic # 6 Polarization: -17.99 SS G_CDS: -2.27 Total: -20.26 kcal Atomic # 7 Polarization: -38.40 SS G_CDS: -0.38 Total: -38.78 kcal Atomic # 8 Polarization: -7.57 SS G_CDS: -0.23 Total: -7.79 kcal Atomic # 14 Polarization: 22.14 SS G_CDS: -5.02 Total: 17.12 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -32.10 -8.52 -40.62 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000793561642.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.153 kcal (2) G-P(sol) polarization free energy of solvation -32.105 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.048 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.519 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.623 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.471 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds